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KJC3_005228-T1, KJC3_005228-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005228-T1
Unique NameKJC3_005228-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:2006931..2008272-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005228-T1 ID=KJC3_005228-T1|Name=KJC3_005228-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1342bp|location=Sequence derived from alignment at ch4:2006931..2008272- (Aspergillus niger KJC3)
CGACGTCGACCACCGCAGGCCCCGACACCCACCCTCCGCGACGAATTATA
CCACCCAGCTCGACTTCGCTTCCTCGTCGGACTGAATTCTCGCAACAATG
GCGACCGAGTTGACCGTCCAGTCGGAACGTGCGTTCCAGAAGCAGCCTCA
CATCTTCGTCAACCCCAAGGCTCAGGCGAAGAGCAAGAAGGTTGGCACCG
GCCGCCGTTGGTACAAGGATGTCGGTCTGGGTTTCCGTACCCCCAAGACC
GCCATTGAGGGCTCCTACATCGGTATGCACGACCTATGTTGAAATTTTAT
TTGCGGCGTTATCGACTTCCGATCATGCGGGACCAAGACTGGGAATCTTT
TGGAGGCTATGGCGAGATGAGAATATGCCGCATGGAGAAGAGAGAAATCA
CCTGGAAAGCGCCAGCATGAGTCTACGATAAAATGCAACTATCTTCTGCA
AAGGATCGGGATGGAATGCGACAAGAGAAGGAATCAAAGATCAGACCTGG
AAAAAGCGCTTGGCGACAGATTTGCGGAACCCGGTTATTCTCATCTCTCA
AAGGCTCCGGAGAAGTCCAGTCATGTCGTTTGAAATCTCCAGGTGGGACA
TATCACTGATATCGAACAGACAAGAAGTGCCCCTTCACCGGTCTGGTTTC
CATCCGTGGCCGTATCCTGACCGGCCGTGTCGTCTCCACCAAGATGCACC
GTACCATCGTCATCCGCCGTGAATACCTCCACTACGTCCCCAAGTACAAC
CGTTACGAGAAGAGACACAAGAACCTTGCCGCTCACGTCTCTCCCGCTTT
CCGTGTTGAGGAAGGTGACTGGGTCACCGTCGGCCAGTGCCGCCCCCTGA
GCAAGACTGTACGTCAAACTTTCCTCGGGATATCTTCTATGGTTACTGGT
GGCAAATGCATTCCTTTCCTATACGCCTGAAAGGATATGGATGATGTCCA
GCGCTATCGAAGATATTCTACATGGATCGCAAAAATATATACGTCAGATG
CGCTAACTTACTATTCAGGTCCGCTTCAACGTCCTCCGTGTCCTGCCCCG
TACCGGCAAGGCCGTCAAGGCTTTCTCCAAGTTCTAAGCGTCTCGATGAG
GAAGGGTGTGTTTTCGCGAGGACGAACCTAGGGCAGCGGCGTGACTGGAT
ATAAACGGAATAGTTTCTAGGGTTGGGATTGTTTCACGATTTCATGTCCC
AGGTACCCTTGTGGAAGGAATATCCAATGAAAAAATTACTTTGATTCTCC
CACATAGACTTTTTATATCTGTACGAAAGCTCAGAGCACTGAGGGAGAGT
TCAGTATGCTAGTGTGAAATCTAGCCTTTCTAATCGAGTCAC
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Coding sequence (CDS) from alignment at ch4:2006931..2008272-

>KJC3_005228-T1 ID=KJC3_005228-T1|Name=KJC3_005228-T1|organism=Aspergillus niger KJC3|type=CDS|length=1449bp|location=Sequence derived from alignment at ch4:2006931..2008272- (Aspergillus niger KJC3)
GTCCGCTTCAACGTCCTCCGTGTCCTGCCCCGTACCGGCAAGGCCGTCAA
GGCTTTCTCCAAGTTCTAAACAAGAAGTGCCCCTTCACCGGTCTGGTTTC
CATCCGTGGCCGTATCCTGACCGGCCGTGTCGTCTCCACCAAGATGCACC
GTACCATCGTCATCCGCCGTGAATACCTCCACTACGTCCCCAAGTACAAC
CGTTACGAGAAGAGACACAAGAACCTTGCCGCTCACGTCTCTCCCGCTTT
CCGTGTTGAGGAAGGTGACTGGGTCACCGTCGGCCAGTGCCGCCCCCTGA
GCAAGACTATGGCGACCGAGTTGACCGTCCAGTCGGAACGTGCGTTCCAG
AAGCAGCCTCACATCTTCGTCAACCCCAAGGCTCAGGCGAAGAGCAAGAA
GGTTGGCACCGGCCGCCGTTGGTACAAGGATGTCGGTCTGGGTTTCCGTA
CCCCCAAGACCGCCATTGAGGGCTCCTACATCGGTCCGCTTCAACGTCCT
CCGTGTCCTGCCCCGTACCGGCAAGGCCGTCAAGGCTTTCTCCAAGTTCT
AAACAAGAAGTGCCCCTTCACCGGTCTGGTTTCCATCCGTGGCCGTATCC
TGACCGGCCGTGTCGTCTCCACCAAGATGCACCGTACCATCGTCATCCGC
CGTGAATACCTCCACTACGTCCCCAAGTACAACCGTTACGAGAAGAGACA
CAAGAACCTTGCCGCTCACGTCTCTCCCGCTTTCCGTGTTGAGGAAGGTG
ACTGGGTCACCGTCGGCCAGTGCCGCCCCCTGAGCAAGACTATGGCGACC
GAGTTGACCGTCCAGTCGGAACGTGCGTTCCAGAAGCAGCCTCACATCTT
CGTCAACCCCAAGGCTCAGGCGAAGAGCAAGAAGGTTGGCACCGGCCGCC
GTTGGTACAAGGATGTCGGTCTGGGTTTCCGTACCCCCAAGACCGCCATT
GAGGGCTCCTACATCGGTCCGCTTCAACGTCCTCCGTGTCCTGCCCCGTA
CCGGCAAGGCCGTCAAGGCTTTCTCCAAGTTCTAAACAAGAAGTGCCCCT
TCACCGGTCTGGTTTCCATCCGTGGCCGTATCCTGACCGGCCGTGTCGTC
TCCACCAAGATGCACCGTACCATCGTCATCCGCCGTGAATACCTCCACTA
CGTCCCCAAGTACAACCGTTACGAGAAGAGACACAAGAACCTTGCCGCTC
ACGTCTCTCCCGCTTTCCGTGTTGAGGAAGGTGACTGGGTCACCGTCGGC
CAGTGCCGCCCCCTGAGCAAGACTATGGCGACCGAGTTGACCGTCCAGTC
GGAACGTGCGTTCCAGAAGCAGCCTCACATCTTCGTCAACCCCAAGGCTC
AGGCGAAGAGCAAGAAGGTTGGCACCGGCCGCCGTTGGTACAAGGATGTC
GGTCTGGGTTTCCGTACCCCCAAGACCGCCATTGAGGGCTCCTACATCG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS11AKJC3_005228Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005228-T1KJC3_005228-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005228-T1.cdsKJC3_005228-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005228-T1.utr3p1KJC3_005228-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005228-T1.exon3KJC3_005228-T1.exon3Aspergillus niger KJC3exon
KJC3_005228-T1.exon2KJC3_005228-T1.exon2Aspergillus niger KJC3exon
KJC3_005228-T1.exon1KJC3_005228-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005228-T1.utr5p1KJC3_005228-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG092653NM
DBxrefInterPro:IPR012340
DBxrefInterPro:IPR019979
DBxrefInterPro:IPR032440
DBxrefInterPro:IPR028333
DBxrefInterPro:IPR000266
DBxrefPFAM:PF16205
DBxrefPFAM:PF00366
Productribosomal 40S subunit protein S11A
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:2006931..2008272 -
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