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KJC3_005299-T1, KJC3_005299-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005299-T1
Unique NameKJC3_005299-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:2245333..2246509-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005299-T1 ID=KJC3_005299-T1|Name=KJC3_005299-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1177bp|location=Sequence derived from alignment at ch4:2245333..2246509- (Aspergillus niger KJC3)
CATCCATCTCGCAATGGCCGTTCCTGACGCAGACGTTCACCCCGAAGCTA
CCGGTGCAGCCAAAGCGCTGGTTGACCGACACCAAGCTGAGCAACCATTA
AAGCTGTATGCCGGCTGGTTCTGTCCGTGAGTTACAACCCCCTCCCCCCC
TTCAAAGTGCACTTTTTGGAATCTTCTACTAATGCCTCCGCAGCTTCGGT
ATACTTCCCACCCCTCATATCTTCTCACTACTCCATTCATAATCGACTAA
TCAATCTCCAGTCCAACGTGTCTGGCTTGTTCTCGAAGAGAAACAAATTC
CCTACCAGTACATCGAAATAAACCCCTACCACAAAGAACCCTCCTTCCTC
GCTCTGAACCCACGAGGCCTCGTCCCCACTATCTCCGTCCCCGACCCCTC
AACCAACACCTCCAAGCCTCTCTACGAATCCACCGTCATCCTCGAATACC
TCGAAGAAGCATACCCAAACCACCGACCTCTCCTCCCTTCTGACCCGTAC
CAGCGCGCCCGTTCCCGCATCTGGATCGACTACGTCACCTCGCGCATTAT
CCCCACCCTGCACCGCTTCCTCCAGTACCAGCCCTCGACGCGCGGAATTG
AGGGCCTGCACCAAGCCCGTCAGGAGTTCCTCTCCACCTTGAAGGAATGG
GCTAAGGAGATCGACTCCTCGGGGCCGTATTTCTGGGGCTCGGAGGTGTC
GCTTCCGGATTTGGTGCTCGCGCCGTGGGCGTTCCGACTTTGGGTGTTTG
ATGAGTTTAAGGGTGGATTAGGGATCCCGAAGCCCGGAGAGGGGGGGGAG
GATGAGGAGGTTTGGGGCAAATGGAGAAAGTGGCAGGAGGCTGTTGAGGG
ACGGCGGAGCGCGAAGGAGACGACGAGTGAGGCGGAGCATTATCTGCCCA
TCTATAAGAGGTATGCGGATGATAAGGCGCAGAGTTGGTTGGCAAGAGCA
ACGAGAGAGGGTAAGGGGGTCCCATGATTCATGATGAATAACTCCGTGGT
CATACGAGATGAGAAATTCATACTAGCTTTTGAACTATAGTCTCGATAAT
CTATATAGAGCCTGCTACTACTCGTAGTATGAGCTCTCTAGAGGGGATTT
GTTGGAGCTAGTAATCAGGCATTTACTGTTAGGGTCCCGGCTACAACTCA
CAAATTAATTTGATCAGTACCAGTGAG
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Coding sequence (CDS) from alignment at ch4:2245333..2246509-

>KJC3_005299-T1 ID=KJC3_005299-T1|Name=KJC3_005299-T1|organism=Aspergillus niger KJC3|type=CDS|length=1470bp|location=Sequence derived from alignment at ch4:2245333..2246509- (Aspergillus niger KJC3)
TCCAACGTGTCTGGCTTGTTCTCGAAGAGAAACAAATTCCCTACCAGTAC
ATCGAAATAAACCCCTACCACAAAGAACCCTCCTTCCTCGCTCTGAACCC
ACGAGGCCTCGTCCCCACTATCTCCGTCCCCGACCCCTCAACCAACACCT
CCAAGCCTCTCTACGAATCCACCGTCATCCTCGAATACCTCGAAGAAGCA
TACCCAAACCACCGACCTCTCCTCCCTTCTGACCCGTACCAGCGCGCCCG
TTCCCGCATCTGGATCGACTACGTCACCTCGCGCATTATCCCCACCCTGC
ACCGCTTCCTCCAGTACCAGCCCTCGACGCGCGGAATTGAGGGCCTGCAC
CAAGCCCGTCAGGAGTTCCTCTCCACCTTGAAGGAATGGGCTAAGGAGAT
CGACTCCTCGGGGCCGTATTTCTGGGGCTCGGAGGTGTCGCTTCCGGATT
TGGTGCTCGCGCCGTGGGCGTTCCGACTTTGGGTGTTTGATGAGTTTAAG
GGTGGATTAGGGATCCCGAAGCCCGGAGAGGGGGGGGAGGATGAGGAGGT
TTGGGGCAAATGGAGAAAGTGGCAGGAGGCTGTTGAGGGACGGCGGAGCG
CGAAGGAGACGACGAGTGAGGCGGAGCATTATCTGCCCATCTATAAGAGG
TATGCGGATGATAAGGCGCAGAGTTGGTTGGCAAGAGCAACGAGAGAGGG
TAAGGGGGTCCCATGAATGCCGGCTGGTTCTGTCCTCCAACGTGTCTGGC
TTGTTCTCGAAGAGAAACAAATTCCCTACCAGTACATCGAAATAAACCCC
TACCACAAAGAACCCTCCTTCCTCGCTCTGAACCCACGAGGCCTCGTCCC
CACTATCTCCGTCCCCGACCCCTCAACCAACACCTCCAAGCCTCTCTACG
AATCCACCGTCATCCTCGAATACCTCGAAGAAGCATACCCAAACCACCGA
CCTCTCCTCCCTTCTGACCCGTACCAGCGCGCCCGTTCCCGCATCTGGAT
CGACTACGTCACCTCGCGCATTATCCCCACCCTGCACCGCTTCCTCCAGT
ACCAGCCCTCGACGCGCGGAATTGAGGGCCTGCACCAAGCCCGTCAGGAG
TTCCTCTCCACCTTGAAGGAATGGGCTAAGGAGATCGACTCCTCGGGGCC
GTATTTCTGGGGCTCGGAGGTGTCGCTTCCGGATTTGGTGCTCGCGCCGT
GGGCGTTCCGACTTTGGGTGTTTGATGAGTTTAAGGGTGGATTAGGGATC
CCGAAGCCCGGAGAGGGGGGGGAGGATGAGGAGGTTTGGGGCAAATGGAG
AAAGTGGCAGGAGGCTGTTGAGGGACGGCGGAGCGCGAAGGAGACGACGA
GTGAGGCGGAGCATTATCTGCCCATCTATAAGAGGTATGCGGATGATAAG
GCGCAGAGTTGGTTGGCAAGAGCAACGAGAGAGGGTAAGGGGGTCCCATG
AATGCCGGCTGGTTCTGTCC
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_005299KJC3_005299Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005299-T1KJC3_005299-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005299-T1.cdsKJC3_005299-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005299-T1.utr3p1KJC3_005299-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005299-T1.exon2KJC3_005299-T1.exon2Aspergillus niger KJC3exon
KJC3_005299-T1.exon1KJC3_005299-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005299-T1.utr5p1KJC3_005299-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036282
DBxrefInterPro:IPR010987
DBxrefInterPro:IPR040079
DBxrefInterPro:IPR004045
DBxrefInterPro:IPR036249
DBxrefPFAM:PF13417
DBxrefPFAM:PF13409
DBxrefPFAM:PF02798
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:2245333..2246509 -
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