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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:2443483..2445970- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005371-T1 ID=KJC3_005371-T1|Name=KJC3_005371-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2488bp|location=Sequence derived from alignment at ch4:2443483..2445970- (Aspergillus niger KJC3)
GCCAGGCCGTTCCTTCTGATTCATATTTGACTTGTAATTGCTCAAGCGCT
AGGTCACCAGCCTCAACCTCTAATCTTGCTCCCCAGCTGTCCGGTGTTAG
GCGTTTGGGATTAGACGCTGGCACGGTTCCCCTTTACTGCCACGCGCCAA
CCCCGCATGAACAATGTTGATGTATTTCATCAGTGTTAGTACTTAGTTCC
CAACCGGCACATTGACTCATACGCCTGAGTGCCGATTTTTACCCGTCGAT
GGGAACCAGCTCGTTGTCCTACAAGTCTTAATTGATTCTGCTCCTCAAGA
GAATCACATTGTTGAGAGTAAATTTGGACACGCAATACGAAACACCAGGA
GAAATAGATTGATTACTCATAATCATTGACTCTAGCCTACTCGGCCATTG
TGAGCCTTATCGCCGAGACCTAAGCCATATCCATTTATTGCCACCAGACA
AAGAGGCGGCCCTGACAAATCATTTGCACGTGTGTCTGCCAACATTATTG
CCAAACATCTGTTCCATTGACTTCCATATCACCATCTCATCAGCGTACAA
ACGTTCTTTCGCCTTCAAACAGACGACTGCCTGAAACTGACCTCAGAAGC
AGATTTCGTGTATTTATTCTCAGCTAGTCGTCCCACCCCGTATTCCGCTC
ACCTTTCTACTGTGAAGCAATTCAACCATCAGATTGTTCTAGGCGATGAC
CTCATTCACTGCTGCTTCTTTGACCAGTCGTGGTGATAAGGTCAATATGA
GTCGTCTGCCGTCTGTTTCGAGTTTAATGTCCCCCCCAGAGTCCAAACCT
CTCGAGAGCTTCAGTCCCACCACAATTTCACCGTATACAATGTCCCAGGA
TCCGTCGTATAGCCATGATGTGAGGCTGCCTCCTATGCCGAGTGATCACA
AGCGAACACAGTCAGAAATGGACTTGCCATCGCCGCCGGTCACTCCCTAT
ACTGGGAATAAGAAACGGCGATCGAATGGATCAGAACCGATTGACAAGGA
TGCCGTCGTCGGTTCCTCTAGGGACCCTGTTCTCTTCCCCCGCCACGAAG
GCCTTACTGATATTGCCACTGATGAGCCATTGTTTGGGTCCATGCTCCCT
CCGTCTGCGGAAGCGCTGGTTGACCAACATATAAATTCTCACATGGCGAG
ATTTGAGAATAAACTTAACAAGCCGACGCGTGACGAATATCTTCTAGCCC
TTTCATGCGTACCGATTGTATCTGCTCAATTTAACCGGAACCCAGCAGCA
TGGGCTAGGGAAGAGCGGGAGACTTTAGAACGCCAGCTTTTGATGATGAA
TCGGTGTCGTCCACGTGCTATAGATGCGAAACTGAAGAAGATTGCACCGG
CTCCTGCAAAGAGGGCAGTTGCTGCCCAGCCTCGTCTGCAACGCACACCC
AGGGTAAAGCGGACACCCAAGTCCACACCGAAGCAAAGGATCCTCGACAC
ATTTGACTCACCCCCGTCGAGTGCCAAGCCGCCTCGCGCCATAGGCACAA
ACCGGGATGACACAGATTACAATTCCATCAAGGACTATTCTCCTTCAATA
GAGACCCTAGGAGGCAACGCAAAGGCACTAAAGGCAGACTGGAAAGGCCA
AGTGTTAGATCTTAGCCATGATCCGGACCGGCACTTGCTGAGCTCTGCAG
AGCTCAACCTTGCTGCTACTTTAAGGCTGTCATGTGCGACCTATCTATGC
AGCAAGCGTCGCATTTTCGAAGCCCGGGTGAAGGCTTTGAATGTTGGTAA
GGAATTTCGGAAGACCGATGCTCAGCAGGCTTGCAAAATTGATGTCAATA
AAGCAAGCAAGCTCTGGACGGCGTATGAGCGGGTTGGTTGGTTTGATCCC
GAACATTTCCGACAGTATCGAAGATGATATGCTTGGAACTGTCGAACCCT
GCGGATCCCGATGGTCTGCCCCATTGATATACTGGTAACACCCACTATGA
TGCGTTAGAGACATGGTCACATGTCTGTATTATCATCAGCCCAAATGCAT
TTCTCAACTCACAATTTTCGCTCCCGTCAATTAGCCATCGGATATTGATA
TGGTACTTACGTTTGTCACTGAGCATAGCTGGATTCTCTGCAACAAGTGG
CAAGGCTGCATACGGTGTTATATTGCTCTTCCACTTTCCCATTCCCCTTC
GTTGCGTTAGCCGTTAAATTCGGATGGTATCGATTTGATTTAACACTTGG
CGTCTTCAGACACCTTTCAATCACCCTTATTCTTTTCCGGCGTTATTGTC
TTTAAAGGGCTGGAACAATTGGCTTTGATGGGTTAGGTTTTGTGTTTCTT
GTGTCGTTCGCCTGACTACTATTCTGACGGCTTGCAATGGCGTCTAGTTT
TTCTTTAGAGTGGTAGATTGTTCTCGTTGCTCAATTGACACGTTGGCATC
ATAAGTCAACAATATGGTAGCACTAGTCAGTCCTGTAGTGACGATCCATG
TACAGGAACCTCGGAGCGTCCGAGAAACAAAAATAATG back to topCoding sequence (CDS) from alignment at ch4:2443483..2445970- >KJC3_005371-T1 ID=KJC3_005371-T1|Name=KJC3_005371-T1|organism=Aspergillus niger KJC3|type=CDS|length=1182bp|location=Sequence derived from alignment at ch4:2443483..2445970- (Aspergillus niger KJC3)
ATGACCTCATTCACTGCTGCTTCTTTGACCAGTCGTGGTGATAAGGTCAA
TATGAGTCGTCTGCCGTCTGTTTCGAGTTTAATGTCCCCCCCAGAGTCCA
AACCTCTCGAGAGCTTCAGTCCCACCACAATTTCACCGTATACAATGTCC
CAGGATCCGTCGTATAGCCATGATGTGAGGCTGCCTCCTATGCCGAGTGA
TCACAAGCGAACACAGTCAGAAATGGACTTGCCATCGCCGCCGGTCACTC
CCTATACTGGGAATAAGAAACGGCGATCGAATGGATCAGAACCGATTGAC
AAGGATGCCGTCGTCGGTTCCTCTAGGGACCCTGTTCTCTTCCCCCGCCA
CGAAGGCCTTACTGATATTGCCACTGATGAGCCATTGTTTGGGTCCATGC
TCCCTCCGTCTGCGGAAGCGCTGGTTGACCAACATATAAATTCTCACATG
GCGAGATTTGAGAATAAACTTAACAAGCCGACGCGTGACGAATATCTTCT
AGCCCTTTCATGCGTACCGATTGTATCTGCTCAATTTAACCGGAACCCAG
CAGCATGGGCTAGGGAAGAGCGGGAGACTTTAGAACGCCAGCTTTTGATG
ATGAATCGGTGTCGTCCACGTGCTATAGATGCGAAACTGAAGAAGATTGC
ACCGGCTCCTGCAAAGAGGGCAGTTGCTGCCCAGCCTCGTCTGCAACGCA
CACCCAGGGTAAAGCGGACACCCAAGTCCACACCGAAGCAAAGGATCCTC
GACACATTTGACTCACCCCCGTCGAGTGCCAAGCCGCCTCGCGCCATAGG
CACAAACCGGGATGACACAGATTACAATTCCATCAAGGACTATTCTCCTT
CAATAGAGACCCTAGGAGGCAACGCAAAGGCACTAAAGGCAGACTGGAAA
GGCCAAGTGTTAGATCTTAGCCATGATCCGGACCGGCACTTGCTGAGCTC
TGCAGAGCTCAACCTTGCTGCTACTTTAAGGCTGTCATGTGCGACCTATC
TATGCAGCAAGCGTCGCATTTTCGAAGCCCGGGTGAAGGCTTTGAATGTT
GGTAAGGAATTTCGGAAGACCGATGCTCAGCAGGCTTGCAAAATTGATGT
CAATAAAGCAAGCAAGCTCTGGACGGCGTATGAGCGGGTTGGTTGGTTTG
ATCCCGAACATTTCCGACAGTATCGAAGATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005371-T1.utr3p1 | KJC3_005371-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR009057 |
| DBxref | InterPro:IPR007526 |
| DBxref | PFAM:PF04433 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:2443483..2445970 - |
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