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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:2546491..2550308- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005376-T1 ID=KJC3_005376-T1|Name=KJC3_005376-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3818bp|location=Sequence derived from alignment at ch4:2546491..2550308- (Aspergillus niger KJC3)
TACACTGAAAGCACGTGGCCTTTTCGGCTGGACCCCATATACTTCCTCCC
ATTGAGTGGTATTTGGATTTCTTTCCCCGGGCTTATCTTTATTCTATTCC
TTGCCCCTCTCCCCCGAAAGGGGTTCTACCAGTGAGAATCAATTCTTCTG
CTGCGAGCCCAAGCTGCAGGGCCAGCTTTACGAAATCACAGAGATTCTTA
GACAAAAGTCATCGATGCCCGGGAGCCTTTTCCCGTCCACATGTCACAAG
TAGATGAGAATGTCAGCGCAATGCTGGCATCATCAGCATCCGGGACGACG
ATGCTGATCGTCGTTCAATTGGCCTCTAGGATATTCACTTTCACCGCAAA
TCAGCTGGTCTTAAGGAGTTTGCCTCCAGCCATCATGGGTGTTGCGTCCC
AACTGGAGCTATATTTCATCTCGATATTATATTTCTCCAGGGAAAGTATC
AGAATGGCTATTCAAAGACAGCCATTGCAACTCAAGCCCCTCACCATGGT
TTCCCACAAGGATAGCACTGGTACAGCTCCCAAAAAGGGCAATGATGTAT
CTGAGGCCCGAAACATAGCCTTGCAGTCAGTAGTGAACATGTCCTACTTG
AGCCTCGCCCTGGGGTTTTTGTTCGCTATGGCATTTGCTACATCTTATAT
ACAGCTGGCTTCGAGAGAGGTGTCAGAGTTACCCTATTACCACGCAAGCG
TGATCATCACTTCCGTTGCATCCCTTATGGAGCTCTCCACTGAGCCCTTC
TTCACTGTAGTGCAGCAATATATGCTACACAGACAACGTGCAGTTGTTGA
GATGAGTGCAGCCTTTGTAAAAAGCCTTACGACCTGCCTTGCTTGTGCAT
GGGCTTCCAGGACCGGCCACAGCATTGGCGTGCTCCCATTTTCAATTGGT
TATCTCTGTTATTCTTCCACACTCATCTGCGGCTATATACTAGCCCTACC
GAGGGTTGCAGACGAGCAGAAGTTTTCTATGTTTCCCACAAAGATAAAGT
CAAGGTAGGCCATGGAAAATTAAACTTGCAATGTTCTATCTGATAACAAA
TGTCTTGGCACAGATCAGATTATTTCATGGGGAGATTCTCATGGCCGATG
ATAGGACTGTCCACAAATGTGTTCTTTCAGTCGGTGGTGAAACATCTTCT
CACCCAGGGTGATTCTATGATGCTGGCAACAATGACGAGCTTAGAAGATC
AAGGCATATATGCACTAGCCTCTAATTACGGTGGTCTCCTGGCTCGCGTC
TTGTTTCAGCCCATTGAAGAAAGCAGTCGAACGCTTTTTTCCTCACTGCT
AAACTCTGGCGGGAGCGGGAATCTACGTGTAGAAAACATCAATGCTGCTA
AAACTCAGTTGACAGAAGTTCTTCGTGCATATAGTCTGATGGCTGTTGTG
GGATTTCCCCTCGGTCCAGTTCTGGCACCTCAATTGCTACATCTGTTAGG
CGGGCGCATCTGGGCTTCACCCAGGATCAGCAGCCTGCTTTCACTTTATT
GCTATTATATACCATTTCTGGCTTATAATGGTATAAGTGAAGCATTTGTC
TCATCAGCAGCAAACTCAGCAGAATTACGCAGACAAGCGGTATGGATGGG
TGTGTTTTCAGCATGCTTTGCATCCGCGGCGTACTTGTTCTTAAAAGTTG
GCGCTCTCGGTGCCCACGGAATGGTTTATGCCAATATTGTTAACATGGCA
GTTCGTATCGTCTGGAGCTTTTCCTTTATTCAGACATTCATGTCTCGACA
CGGAAGCGGTATCGCTATTTCTGAACTTAGCCCACGGCCGCTTACCTGTA
TCGCCAGTATCACGATGTCTATAGTTCTTAACTCAAGAGTTCTATATGCT
CTTGATATCTACAGGACGAGAGATGCGCTGATACTTGGAGCTATGTATAT
TCTTCTCGTGTAAGTTCCACAACTTTATATGCAAGCTACAGTCTAATGGT
GAGGATAGGTCTTATCTCGAGCGGAAATATTTGTTGATCTATTACACAAA
AGCCCACGAGCTGGTGAAATTTAAAACATCCAGTACTCCAAAGTCCAAAA
GCGAATAAGCCATCATCAATCGTCAAAAACGATCTTGGTTGATGTCTTAT
TGGTGTCGACATCCTTATAAAAGGCGCCGTATGCGTCATGTTGCTTCTTT
TTAACCGTTGCCCCGAATTTGAGAAGATCCTCGGGTACATCCTGATTAGC
CGCTTTTAGAACGTTTATTAAACTATAACATGTCAGTCTCGGTTGAGTTT
GATCGGAATGCTTCCAAGACAATGACTACTTACGCTCCAGACTGAGCTTT
GTCAACCTCAGTAAATAGAGTGATGGCATGGCCCTCAGCTCCAGCACGGC
CGGTCCTTTGGGCCAGTCAGTAGGCGATACTCAACATACAGGGACGAGGT
ACTTCACTAACCGGCCAATTCGATGTACGTAATCCTCAACGGTCAGGGGA
AACGTAACGTTGATGACAAGCTTAACTGAGGGTATGTCGAGACCACGAGC
TGCCACATCAGTTGCGACAAGAACGGTTGAGACGCCTTTTTTGAAGGATT
CCAAACTTTTGAATCGTTCCTGTTGACCTAAATCACCGTGTATTCCGGCA
ACCTTGAAGCCTTTATTCCAAAGAAGTCTCTCGACACGCACAGCCTCCTT
CTTATACAAGCAGAACACCAGAATCTTATCCGAGCTGGATGGGCCCTTCT
GATACTTATTCAATAGCTGCACAAGCCTCTGTTCTTTTTCGTGCGGCTTC
ACCACCTCAACAACTTGCTTGATCCTAGTATTTGCGCGCGGATCAGCCGA
GGGCTCTCCACCAATTGTGACCGTCACAGGAGAAGTCATAAACGTTGCAG
CAAGATCCCTAACCACTGGGGGCCAGGTCGCAGTGAACATTACAGTTTGG
CGCTTTGACACCGGCATGGGGCGGATGATATCCTTGATATCCTGTTCGAA
ACCTTTGTCCAGCATGCGATCTGCTTCATCCAGAACAAGATACTTGACTT
TTCCTAGATCCACCGAGCCATCATTTTGAAGATCCTTCAGTCTTCCTGGC
GTCGCCACGACAATAGCCGCTGTCTTCAAAGCCTCACGCTGCTCCTCTTT
CTTCACACCCCCGAAGATACAAGCTACCTTGATATCCACTAATTCTGCAA
ATTTCGAGATCTGATCATGTATCTGCATTGCAAGTTCTCTCGTTGGGGAA
ATCATCACCGCTGTCGGCTTATAAGGCTTTCCCTTCTTCGCCGAGTCTTG
TAAGTTTTTCAGGCACGGCAAGCCGAAGCCAAGCGTCTTACCACTCCCAG
TTTCAGCAATGCCGATTACATCACGGCCAGAAAACAGGAAAGGCCAGGTT
GCTGACTGGATGGCAGTCGGAGAAGTGAAAGATTCAAGAGGACGGTACAG
TGCACTGTTGCAGGTAGGTAGGTGAGAGAAAGAGGTAATGGGATGAAGCT
TCGTTGCACCCTCTAAAGTATCCGTTATCTTGACAGAGTTTTCTTCGAGA
AACTTCTCTATAACTGCTGGTGAAGGTTCTTTCGGGTCAGTGTACTGCGT
CTCAGAGGACTGCGCACTGGCTTGGGAGTCCTCAGCCTTCTTTGTGTGCT
TTTCGTTTCTTGACTTCTTTTTCGCCCTATGCTCAGTGCTACCCTTATCT
TGAAGTTCACGCTTGGCCATGTTGTCTTCGTTGTTGCCTTAAACTTTCTC
AACTTTAGGTGTGGAATATATGTGTACGATCTTTTGTAACAAAGAGGAAA
GGAGGGGAAAGCAAAAAAAGAAAATCAGCTGCGTCTCGATAGAATATTAA
GGGCGCCTTCGATTTGCC back to topCoding sequence (CDS) from alignment at ch4:2546491..2550308- >KJC3_005376-T1 ID=KJC3_005376-T1|Name=KJC3_005376-T1|organism=Aspergillus niger KJC3|type=CDS|length=5130bp|location=Sequence derived from alignment at ch4:2546491..2550308- (Aspergillus niger KJC3)
GTCTTATCTCGAGCGGAAATATTTGTTGATCTATTACACAAAAGCCCACG
AGCTGGTGAAATTTAAAACATCCAGTACTCCAAAGTCCAAAAGCGAATAA
ATCAGATTATTTCATGGGGAGATTCTCATGGCCGATGATAGGACTGTCCA
CAAATGTGTTCTTTCAGTCGGTGGTGAAACATCTTCTCACCCAGGGTGAT
TCTATGATGCTGGCAACAATGACGAGCTTAGAAGATCAAGGCATATATGC
ACTAGCCTCTAATTACGGTGGTCTCCTGGCTCGCGTCTTGTTTCAGCCCA
TTGAAGAAAGCAGTCGAACGCTTTTTTCCTCACTGCTAAACTCTGGCGGG
AGCGGGAATCTACGTGTAGAAAACATCAATGCTGCTAAAACTCAGTTGAC
AGAAGTTCTTCGTGCATATAGTCTGATGGCTGTTGTGGGATTTCCCCTCG
GTCCAGTTCTGGCACCTCAATTGCTACATCTGTTAGGCGGGCGCATCTGG
GCTTCACCCAGGATCAGCAGCCTGCTTTCACTTTATTGCTATTATATACC
ATTTCTGGCTTATAATGGTATAAGTGAAGCATTTGTCTCATCAGCAGCAA
ACTCAGCAGAATTACGCAGACAAGCGGTATGGATGGGTGTGTTTTCAGCA
TGCTTTGCATCCGCGGCGTACTTGTTCTTAAAAGTTGGCGCTCTCGGTGC
CCACGGAATGGTTTATGCCAATATTGTTAACATGGCAGTTCGTATCGTCT
GGAGCTTTTCCTTTATTCAGACATTCATGTCTCGACACGGAAGCGGTATC
GCTATTTCTGAACTTAGCCCACGGCCGCTTACCTGTATCGCCAGTATCAC
GATGTCTATAGTTCTTAACTCAAGAGTTCTATATGCTCTTGATATCTACA
GGACGAGAGATGCGCTGATACTTGGAGCTATGTATATTCTTCTCGTATGT
CACAAGTAGATGAGAATGTCAGCGCAATGCTGGCATCATCAGCATCCGGG
ACGACGATGCTGATCGTCGTTCAATTGGCCTCTAGGATATTCACTTTCAC
CGCAAATCAGCTGGTCTTAAGGAGTTTGCCTCCAGCCATCATGGGTGTTG
CGTCCCAACTGGAGCTATATTTCATCTCGATATTATATTTCTCCAGGGAA
AGTATCAGAATGGCTATTCAAAGACAGCCATTGCAACTCAAGCCCCTCAC
CATGGTTTCCCACAAGGATAGCACTGGTACAGCTCCCAAAAAGGGCAATG
ATGTATCTGAGGCCCGAAACATAGCCTTGCAGTCAGTAGTGAACATGTCC
TACTTGAGCCTCGCCCTGGGGTTTTTGTTCGCTATGGCATTTGCTACATC
TTATATACAGCTGGCTTCGAGAGAGGTGTCAGAGTTACCCTATTACCACG
CAAGCGTGATCATCACTTCCGTTGCATCCCTTATGGAGCTCTCCACTGAG
CCCTTCTTCACTGTAGTGCAGCAATATATGCTACACAGACAACGTGCAGT
TGTTGAGATGAGTGCAGCCTTTGTAAAAAGCCTTACGACCTGCCTTGCTT
GTGCATGGGCTTCCAGGACCGGCCACAGCATTGGCGTGCTCCCATTTTCA
ATTGGTTATCTCTGTTATTCTTCCACACTCATCTGCGGCTATATACTAGC
CCTACCGAGGGTTGCAGACGAGCAGAAGTTTTCTATGTTTCCCACAAAGA
TAAAGTCAAGGTCTTATCTCGAGCGGAAATATTTGTTGATCTATTACACA
AAAGCCCACGAGCTGGTGAAATTTAAAACATCCAGTACTCCAAAGTCCAA
AAGCGAATAAATCAGATTATTTCATGGGGAGATTCTCATGGCCGATGATA
GGACTGTCCACAAATGTGTTCTTTCAGTCGGTGGTGAAACATCTTCTCAC
CCAGGGTGATTCTATGATGCTGGCAACAATGACGAGCTTAGAAGATCAAG
GCATATATGCACTAGCCTCTAATTACGGTGGTCTCCTGGCTCGCGTCTTG
TTTCAGCCCATTGAAGAAAGCAGTCGAACGCTTTTTTCCTCACTGCTAAA
CTCTGGCGGGAGCGGGAATCTACGTGTAGAAAACATCAATGCTGCTAAAA
CTCAGTTGACAGAAGTTCTTCGTGCATATAGTCTGATGGCTGTTGTGGGA
TTTCCCCTCGGTCCAGTTCTGGCACCTCAATTGCTACATCTGTTAGGCGG
GCGCATCTGGGCTTCACCCAGGATCAGCAGCCTGCTTTCACTTTATTGCT
ATTATATACCATTTCTGGCTTATAATGGTATAAGTGAAGCATTTGTCTCA
TCAGCAGCAAACTCAGCAGAATTACGCAGACAAGCGGTATGGATGGGTGT
GTTTTCAGCATGCTTTGCATCCGCGGCGTACTTGTTCTTAAAAGTTGGCG
CTCTCGGTGCCCACGGAATGGTTTATGCCAATATTGTTAACATGGCAGTT
CGTATCGTCTGGAGCTTTTCCTTTATTCAGACATTCATGTCTCGACACGG
AAGCGGTATCGCTATTTCTGAACTTAGCCCACGGCCGCTTACCTGTATCG
CCAGTATCACGATGTCTATAGTTCTTAACTCAAGAGTTCTATATGCTCTT
GATATCTACAGGACGAGAGATGCGCTGATACTTGGAGCTATGTATATTCT
TCTCGTATGTCACAAGTAGATGAGAATGTCAGCGCAATGCTGGCATCATC
AGCATCCGGGACGACGATGCTGATCGTCGTTCAATTGGCCTCTAGGATAT
TCACTTTCACCGCAAATCAGCTGGTCTTAAGGAGTTTGCCTCCAGCCATC
ATGGGTGTTGCGTCCCAACTGGAGCTATATTTCATCTCGATATTATATTT
CTCCAGGGAAAGTATCAGAATGGCTATTCAAAGACAGCCATTGCAACTCA
AGCCCCTCACCATGGTTTCCCACAAGGATAGCACTGGTACAGCTCCCAAA
AAGGGCAATGATGTATCTGAGGCCCGAAACATAGCCTTGCAGTCAGTAGT
GAACATGTCCTACTTGAGCCTCGCCCTGGGGTTTTTGTTCGCTATGGCAT
TTGCTACATCTTATATACAGCTGGCTTCGAGAGAGGTGTCAGAGTTACCC
TATTACCACGCAAGCGTGATCATCACTTCCGTTGCATCCCTTATGGAGCT
CTCCACTGAGCCCTTCTTCACTGTAGTGCAGCAATATATGCTACACAGAC
AACGTGCAGTTGTTGAGATGAGTGCAGCCTTTGTAAAAAGCCTTACGACC
TGCCTTGCTTGTGCATGGGCTTCCAGGACCGGCCACAGCATTGGCGTGCT
CCCATTTTCAATTGGTTATCTCTGTTATTCTTCCACACTCATCTGCGGCT
ATATACTAGCCCTACCGAGGGTTGCAGACGAGCAGAAGTTTTCTATGTTT
CCCACAAAGATAAAGTCAAGGTCTTATCTCGAGCGGAAATATTTGTTGAT
CTATTACACAAAAGCCCACGAGCTGGTGAAATTTAAAACATCCAGTACTC
CAAAGTCCAAAAGCGAATAAATCAGATTATTTCATGGGGAGATTCTCATG
GCCGATGATAGGACTGTCCACAAATGTGTTCTTTCAGTCGGTGGTGAAAC
ATCTTCTCACCCAGGGTGATTCTATGATGCTGGCAACAATGACGAGCTTA
GAAGATCAAGGCATATATGCACTAGCCTCTAATTACGGTGGTCTCCTGGC
TCGCGTCTTGTTTCAGCCCATTGAAGAAAGCAGTCGAACGCTTTTTTCCT
CACTGCTAAACTCTGGCGGGAGCGGGAATCTACGTGTAGAAAACATCAAT
GCTGCTAAAACTCAGTTGACAGAAGTTCTTCGTGCATATAGTCTGATGGC
TGTTGTGGGATTTCCCCTCGGTCCAGTTCTGGCACCTCAATTGCTACATC
TGTTAGGCGGGCGCATCTGGGCTTCACCCAGGATCAGCAGCCTGCTTTCA
CTTTATTGCTATTATATACCATTTCTGGCTTATAATGGTATAAGTGAAGC
ATTTGTCTCATCAGCAGCAAACTCAGCAGAATTACGCAGACAAGCGGTAT
GGATGGGTGTGTTTTCAGCATGCTTTGCATCCGCGGCGTACTTGTTCTTA
AAAGTTGGCGCTCTCGGTGCCCACGGAATGGTTTATGCCAATATTGTTAA
CATGGCAGTTCGTATCGTCTGGAGCTTTTCCTTTATTCAGACATTCATGT
CTCGACACGGAAGCGGTATCGCTATTTCTGAACTTAGCCCACGGCCGCTT
ACCTGTATCGCCAGTATCACGATGTCTATAGTTCTTAACTCAAGAGTTCT
ATATGCTCTTGATATCTACAGGACGAGAGATGCGCTGATACTTGGAGCTA
TGTATATTCTTCTCGTATGTCACAAGTAGATGAGAATGTCAGCGCAATGC
TGGCATCATCAGCATCCGGGACGACGATGCTGATCGTCGTTCAATTGGCC
TCTAGGATATTCACTTTCACCGCAAATCAGCTGGTCTTAAGGAGTTTGCC
TCCAGCCATCATGGGTGTTGCGTCCCAACTGGAGCTATATTTCATCTCGA
TATTATATTTCTCCAGGGAAAGTATCAGAATGGCTATTCAAAGACAGCCA
TTGCAACTCAAGCCCCTCACCATGGTTTCCCACAAGGATAGCACTGGTAC
AGCTCCCAAAAAGGGCAATGATGTATCTGAGGCCCGAAACATAGCCTTGC
AGTCAGTAGTGAACATGTCCTACTTGAGCCTCGCCCTGGGGTTTTTGTTC
GCTATGGCATTTGCTACATCTTATATACAGCTGGCTTCGAGAGAGGTGTC
AGAGTTACCCTATTACCACGCAAGCGTGATCATCACTTCCGTTGCATCCC
TTATGGAGCTCTCCACTGAGCCCTTCTTCACTGTAGTGCAGCAATATATG
CTACACAGACAACGTGCAGTTGTTGAGATGAGTGCAGCCTTTGTAAAAAG
CCTTACGACCTGCCTTGCTTGTGCATGGGCTTCCAGGACCGGCCACAGCA
TTGGCGTGCTCCCATTTTCAATTGGTTATCTCTGTTATTCTTCCACACTC
ATCTGCGGCTATATACTAGCCCTACCGAGGGTTGCAGACGAGCAGAAGTT
TTCTATGTTTCCCACAAAGATAAAGTCAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005319 | lipid transporter activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006869 | lipid transport |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005376-T1.utr3p1 | KJC3_005376-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005376-T1.utr5p1 | KJC3_005376-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR007594 |
| DBxref | PFAM:PF04506 |
| DBxref | PFAM:PF01943 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:2546491..2550308 - |
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