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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:2650970..2655652- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005414-T2 ID=KJC3_005414-T2|Name=KJC3_005414-T2|organism=Aspergillus niger KJC3|type=mRNA|length=4683bp|location=Sequence derived from alignment at ch4:2650970..2655652- (Aspergillus niger KJC3)
CTCACTCACTCGGTATGGTAACGTACTGGGCTCAACCGGGACGATACCTG
ACAAGACATGCAAGAAGAAGCAGCTCGTGTTGAAACTCTTGAATTGGCTG
CGAGTTCGTTCGCTCGTCATGAATTTTTTTCTGCCTCGTCCTTTAGTCCG
TCGGTCGCACTCTCTCACTTTCTGACTACGATACTGAAGTGACTCTTCTC
TCCTCCTTCTCTCTCGTCTCTCCTCTCCTCCAATCCTTCCCCGCGTTTTC
CTAACCACTTACATTCGATTTTCCCTCCTCTCCCCTCCTCTTCTCATACC
CCTCCTGTTAGTCTCTCCCCTCTTTCGTATATATCATCTCCCCTCCTCTT
GACAGCGTCACTCGCATTGCGCCGCTGCTCATCGGATCCGCTCCATCTCG
ACCCTTTGGATACAACAGGTTTTCCCCGCAGCCCCGGCAAGTCGTTCGCT
CCACCGACGCTACTCATTGCCACTACCTGCCGCGTGACATAGAATTTCGG
GAAAAAGAAAAAGAAAAAAAAAAGGGAAGAAAAAGAAAGGATACAAGGAA
GAGACTAAAAAAAAGTAAAAGGGAATCTTACTTTACCATTGTTCTCCTGA
ACACTTTTCACTACACCCCATAGGAAAACACTTCGGCGCATTGCAACAGT
CAGTCTCACTTTCTGACTGCTGCTGACTGAGCACACGCAAGGTCCTTCGT
GGTCGCCGACCCTCCTACTATCTATCTACCACCACCACTACGCCAGCCGA
TTCCTAGCCGTCGTCGTGTGGATTCTATGCGCCCGACCGGCCAACGCCCG
ATTTCTTTGCGACTCCCAGAGTAAGGCCTGGTGAGGTTGATCAGTGGACT
CTCGACAAAGATCTCCTTCTGTTGTGCGCTGGTTCGCAACGCGACAAAAG
GCAGTCAGTCTTGCTCAAAATTTACGGTGGCAACCCCACGCGCTCGCCCG
CCTTGCAGCTGCTTCACTCACCCTGTCGCTGATCGCCTCGATTCACGACG
CGGAGTACTACCCGGTTAGACGGATTGATAACGGCCGTATCGCACACACA
TACACCTCGGTTACAATTGTTTGCCGATATGAACGCGGAACCGAAGGAGC
AAGATTCCCCAGCTCCGTCGGCTGAGCGCACGGAAGCCAGTCAGGAGATT
AGTGCTGCCGGAGCACAGGCCGACAAGCCGAAGACCGAGGCCAACGGCGA
CGGGACTGCAAATGGTGCCTCCGCGAACGGCCAGAAGCCTAACCCGAAAG
ACCCGTCGAGACCCCGGAGGAAGAAGGCGAGACGGGCGTGTTTTGCTTGC
CAGCGCGCACACTTGACTTGCGGTACGACTGACCTTACTTCCAGCGTTGC
TTACATTCAACCTTTTACTCTCCAATTACACATGCGTTTAGCGCCCATAC
ATGCGCACTCTAGCGGCGCATGTCTTCTGCGCGTCTGACTGAACTTGCAA
ACTAATCGAGGTTTCGCATAGGTGATGAGCGACCGTGTCAGCGGTGCATT
AAGCGCGGGCTCCAGGATGCGTGTCACGACGGGGTCCGGAAGAAGGCCAA
GTACCTCCACGACGCGCCGGATGGAGCGTTGATGCCGGGGATTGGCGGGA
CGTTTTACAACAACCCCATGCGCAACAGCTTGCCCCTCTCTCGGAATGGC
GCCAATGCCGTGAACGCGACCGGTCAGCAGAGCGCTGGCGCAAACTTCTA
TCCTACTCCCCAGTCGACTACCTATGTCTACCAAGAGAATACCATCAACC
AGGGCTCATTTCCTTCGCAATCGCCTGTGTCGCCGACATTCAACCTCAAG
GCCACGCCTACGGCTCGAACCAACAGCCTCTCCTCCGTCAACCCGCAACC
ACCGTCCACGAGCGTCTCCGGACCCCCAGGCCAGGGTCAAAACCCGTTCG
CCGGTCCCTTCTTTGACCCCAGCGACCCCGCTCTCTTCAACTTTGACCTT
TCCAGCATGAACTTTGAGAACCGATACGGTGCGTTAGAGTTTGGCATGCT
GGGACATATGGCGACGGGCGCGGGCGATTCACCGAGTGATTCGGCCACGC
AGCGCGGGTCTATGGGGCGCAGTGGCTCGGCACAATATGCTTCAACTCCC
ATCACTGGGGCACCAGGCTTTGGGGAAAGCCCGGGCAACCAGCAGCCATT
TATGTTCGGGGACCCGCTTCTCAACGAATGGCCCAGCGGGCAGGCCCCGG
GACAACCGCATCTGCCGGGGGTTTATCCGCAGTCCGGGCAAGGCAGCGCG
ATTCCTGGTCATCTGAGCAAAGCGGATGCGCCGCATGCATTTGCCATCGA
AAGCGGACCGGCCAGTTTCAATAGCCCCGGTGCGACGACTAGTCCGCAGA
TGACGACTGGACTCGAAGAGACCCCGTTTCACAGTGCGGTGGCAAGCAAG
TCGAACGGGTTAGCCCCGCACGGACAACGACCGATGATTACAACACCGAG
CTTGAAGCATCAGAACCTGCAGGTCGGCGTGCGGCGACGACAACGTAACC
CGTCGGCCATCTACGACAGCGTCAAGGAGCCGTACGCATACACCAGCCGC
TTCCATGGCCTCACGGCATTCATCCAACGACGGTTCCCGCCGCAGAAGAC
GCTTCAGATCGCCAAGGCGCTGGCGTCGATCCGGCCGTCGTTCATCGCGA
CGACTAAGACGCTCAATCGGGACGACCTGATCTTCATGGAGAAGTGCTTC
CAGCGGACGTTGTGGGAATACGAGGACTTTATCAACGCGTGCGGCACGCC
GACCATCGTGTGCCGTCGGACGGGTGAGATTGCTGCTGTGGGCAAGGAGT
TCAGTATCTTGACGGGATGGAAGAAGGATGTACTGCTCGGCAAAGAGCCG
AATCTCAATGTCAACACGGGTGGCTCGTCAATGCCGAACTCCGGGGCGTC
ATCACGCAGCTTCACCCCCCGGTCGACAGTGGACAACACGCCCGGGCGCC
CGCAGCCGGTGTTCCTGGCAGAGTTGTTGGACGATGACAGCGTGGTGCAG
TTCTACGAGGATTTTGCACGGCTGGCGTTTGGCGACTCGCGCGGTAGCGT
GATGACAACGTGCAAGCTGTTGAAGTACAAGACGAAGGAGGACATGGAGG
GCGCAGCAGCGGAGGATAGCCAGCGCTGGAACAACCACCTGCGCAAGGGA
GGGATTGCCAGCGAGGCGGGGATGAACCAGCTAGGGTTCAAGGACGGCAA
GGTCGAATGTGCGTACTGCTGGACAGTGAAGCGAGATGTATTCGACATAC
CGATGTTGATTGTGATGAATGTGAGTAATACCAGCGTTCCCGTGCTGTGA
TGATGATGCTAATGAGGGTATAGTTCTTACCGTGCATTTGATTTATGATC
ATAATTGTTTCATGTTCATACCCGGGCCGGATATCAAAAAGGATGATTTC
TGATTATTTTTACTGTTAGTTTTTGGCACTGACCAGATGCATCTGGTCTT
GTATTGGTACATATTGCTACTGTGTATGATTCCCAGGCTGACATAGAGGC
GTTGTACATATTGGAAGTGGCTATGGTAGCTAGCCATGTAGTTGCAACTG
AGCATGATGAGCAACCATATAAGCATAGATGAACGTAATAACCAGATAAA
CATTATATCCTCCAACAAGATCCTCCCTCACATCTCCCCTTGCAATCAAT
CAATCAAATCAATCATAATTACGCATCATATAATCTACAACATCCCCAAT
CCAGCGACAGCCACACCCACAGCCAAGGCCCCAGCCCCGACAACATTCCG
TCCAGCCATGCCCGTCTCCGTACTTCCACTTCCACTAGCAGTCGCAGTAG
AAGTTCCAGTAGCACCACTCAACTTATCAGCACCCGCCGTAACACTAAGA
GTCTCATACCCGATCTCCGCACTGGCGACACTAATCTCCGTATTGACCTC
CGTACTCGTACTAACCCCCTTATACGTCGCCTCGATCCCATAGCTCACAC
TGCAGGACGCGCCCTGCGTCACGCCCGTGATCTTGCAGTCCTCGACCATG
GTGAGCACCTCCTGCACGCCCTCCACGCTGGTGCTGTACACGGCCGAGAG
GGTGTATGTGGAGGGTCCTGCGGTGACGGTGATGGGGCTGGGCAGGATGC
AGTTATCGTCGTTGAGGCATGAGACGGCCATGGTGGTGGCTGTCGGGTTG
GCGGAGATGATGGACGCGCCGAGAGGGATGCTGGTGAATTGAGGAATACC
GGCCGCGGCGGTGGTCGTTGCGTGGTAAGTGAAGAGGGAGACGGTTGATA
CATCGGAGGCGGTAGTGAGGGAGAGGAGTGGGAGGAGGGTGAGGAGGGTG
CTGGTGGTGAAATGCATTTTGATGGTTGCTTTCTGTTTCTTTTCTTTTGA
ATTATTTGTGTATCTGTATATGGTAGAGATGTAGAGACAGTAAGAGGAAG
AAGAAGAGAAGAAGTTATCAGGAGTAGGAGTAAAGACTGTATAGGAGGAA
AGAAAAGATAATAGATAGGATGCAGAGAGATGTGTGATACCACCAAGAAA
GAATCAGACAGGAACAGCCCAATTTGTACTACTTCTGTCTCACAATCATT
CTACACTTTGACCCCTGACGACCAGAACCCTTCCATTCCGTGTTTACGAG
ACCCTCATTTCTCAAGGTTCTTAGCGTAGCCTCGTCCTCTAATCACCCTT
CTCAGCAAATAGAGTGTCGTAGTGCCCTCCCCG back to topCoding sequence (CDS) from alignment at ch4:2650970..2655652- >KJC3_005414-T2 ID=KJC3_005414-T2|Name=KJC3_005414-T2|organism=Aspergillus niger KJC3|type=CDS|length=4146bp|location=Sequence derived from alignment at ch4:2650970..2655652- (Aspergillus niger KJC3)
GTGATGAGCGACCGTGTCAGCGGTGCATTAAGCGCGGGCTCCAGGATGCG
TGTCACGACGGGGTCCGGAAGAAGGCCAAGTACCTCCACGACGCGCCGGA
TGGAGCGTTGATGCCGGGGATTGGCGGGACGTTTTACAACAACCCCATGC
GCAACAGCTTGCCCCTCTCTCGGAATGGCGCCAATGCCGTGAACGCGACC
GGTCAGCAGAGCGCTGGCGCAAACTTCTATCCTACTCCCCAGTCGACTAC
CTATGTCTACCAAGAGAATACCATCAACCAGGGCTCATTTCCTTCGCAAT
CGCCTGTGTCGCCGACATTCAACCTCAAGGCCACGCCTACGGCTCGAACC
AACAGCCTCTCCTCCGTCAACCCGCAACCACCGTCCACGAGCGTCTCCGG
ACCCCCAGGCCAGGGTCAAAACCCGTTCGCCGGTCCCTTCTTTGACCCCA
GCGACCCCGCTCTCTTCAACTTTGACCTTTCCAGCATGAACTTTGAGAAC
CGATACGGTGCGTTAGAGTTTGGCATGCTGGGACATATGGCGACGGGCGC
GGGCGATTCACCGAGTGATTCGGCCACGCAGCGCGGGTCTATGGGGCGCA
GTGGCTCGGCACAATATGCTTCAACTCCCATCACTGGGGCACCAGGCTTT
GGGGAAAGCCCGGGCAACCAGCAGCCATTTATGTTCGGGGACCCGCTTCT
CAACGAATGGCCCAGCGGGCAGGCCCCGGGACAACCGCATCTGCCGGGGG
TTTATCCGCAGTCCGGGCAAGGCAGCGCGATTCCTGGTCATCTGAGCAAA
GCGGATGCGCCGCATGCATTTGCCATCGAAAGCGGACCGGCCAGTTTCAA
TAGCCCCGGTGCGACGACTAGTCCGCAGATGACGACTGGACTCGAAGAGA
CCCCGTTTCACAGTGCGGTGGCAAGCAAGTCGAACGGGTTAGCCCCGCAC
GGACAACGACCGATGATTACAACACCGAGCTTGAAGCATCAGAACCTGCA
GGTCGGCGTGCGGCGACGACAACGTAACCCGTCGGCCATCTACGACAGCG
TCAAGGAGCCGTACGCATACACCAGCCGCTTCCATGGCCTCACGGCATTC
ATCCAACGACGGTTCCCGCCGCAGAAGACGCTTCAGATCGCCAAGGCGCT
GGCGTCGATCCGGCCGTCGTTCATCGCGACGACTAAGACGCTCAATCGGG
ACGACCTGATCTTCATGGAGAAGTGCTTCCAGCGGACGTTGTGGGAATAC
GAGGACTTTATCAACGCGTGCGGCACGCCGACCATCGTGTGCCGTCGGAC
GGGTGAGATTGCTGCTGTGGGCAAGGAGTTCAGTATCTTGACGGGATGGA
AGAAGGATGTACTGCTCGGCAAAGAGCCGAATCTCAATGTCAACACGGGT
GGCTCGTCAATGCCGAACTCCGGGGCGTCATCACGCAGCTTCACCCCCCG
GTCGACAGTGGACAACACGCCCGGGCGCCCGCAGCCGGTGTTCCTGGCAG
AGTTGTTGGACGATGACAGCGTGGTGCAGTTCTACGAGGATTTTGCACGG
CTGGCGTTTGGCGACTCGCGCGGTAGCGTGATGACAACGTGCAAGCTGTT
GAAGTACAAGACGAAGGAGGACATGGAGGGCGCAGCAGCGGAGGATAGCC
AGCGCTGGAACAACCACCTGCGCAAGGGAGGGATTGCCAGCGAGGCGGGG
ATGAACCAGCTAGGGTTCAAGGACGGCAAGGTCGAATGTGCGTACTGCTG
GACAGTGAAGCGAGATGTATTCGACATACCGATGTTGATTGTGATGAATG
TGAGTAATACCAGCGTTCCCGTGCTGTGAATGAACGCGGAACCGAAGGAG
CAAGATTCCCCAGCTCCGTCGGCTGAGCGCACGGAAGCCAGTCAGGAGAT
TAGTGCTGCCGGAGCACAGGCCGACAAGCCGAAGACCGAGGCCAACGGCG
ACGGGACTGCAAATGGTGCCTCCGCGAACGGCCAGAAGCCTAACCCGAAA
GACCCGTCGAGACCCCGGAGGAAGAAGGCGAGACGGGCGTGTTTTGCTTG
CCAGCGCGCACACTTGACTTGCGGTGATGAGCGACCGTGTCAGCGGTGCA
TTAAGCGCGGGCTCCAGGATGCGTGTCACGACGGGGTCCGGAAGAAGGCC
AAGTACCTCCACGACGCGCCGGATGGAGCGTTGATGCCGGGGATTGGCGG
GACGTTTTACAACAACCCCATGCGCAACAGCTTGCCCCTCTCTCGGAATG
GCGCCAATGCCGTGAACGCGACCGGTCAGCAGAGCGCTGGCGCAAACTTC
TATCCTACTCCCCAGTCGACTACCTATGTCTACCAAGAGAATACCATCAA
CCAGGGCTCATTTCCTTCGCAATCGCCTGTGTCGCCGACATTCAACCTCA
AGGCCACGCCTACGGCTCGAACCAACAGCCTCTCCTCCGTCAACCCGCAA
CCACCGTCCACGAGCGTCTCCGGACCCCCAGGCCAGGGTCAAAACCCGTT
CGCCGGTCCCTTCTTTGACCCCAGCGACCCCGCTCTCTTCAACTTTGACC
TTTCCAGCATGAACTTTGAGAACCGATACGGTGCGTTAGAGTTTGGCATG
CTGGGACATATGGCGACGGGCGCGGGCGATTCACCGAGTGATTCGGCCAC
GCAGCGCGGGTCTATGGGGCGCAGTGGCTCGGCACAATATGCTTCAACTC
CCATCACTGGGGCACCAGGCTTTGGGGAAAGCCCGGGCAACCAGCAGCCA
TTTATGTTCGGGGACCCGCTTCTCAACGAATGGCCCAGCGGGCAGGCCCC
GGGACAACCGCATCTGCCGGGGGTTTATCCGCAGTCCGGGCAAGGCAGCG
CGATTCCTGGTCATCTGAGCAAAGCGGATGCGCCGCATGCATTTGCCATC
GAAAGCGGACCGGCCAGTTTCAATAGCCCCGGTGCGACGACTAGTCCGCA
GATGACGACTGGACTCGAAGAGACCCCGTTTCACAGTGCGGTGGCAAGCA
AGTCGAACGGGTTAGCCCCGCACGGACAACGACCGATGATTACAACACCG
AGCTTGAAGCATCAGAACCTGCAGGTCGGCGTGCGGCGACGACAACGTAA
CCCGTCGGCCATCTACGACAGCGTCAAGGAGCCGTACGCATACACCAGCC
GCTTCCATGGCCTCACGGCATTCATCCAACGACGGTTCCCGCCGCAGAAG
ACGCTTCAGATCGCCAAGGCGCTGGCGTCGATCCGGCCGTCGTTCATCGC
GACGACTAAGACGCTCAATCGGGACGACCTGATCTTCATGGAGAAGTGCT
TCCAGCGGACGTTGTGGGAATACGAGGACTTTATCAACGCGTGCGGCACG
CCGACCATCGTGTGCCGTCGGACGGGTGAGATTGCTGCTGTGGGCAAGGA
GTTCAGTATCTTGACGGGATGGAAGAAGGATGTACTGCTCGGCAAAGAGC
CGAATCTCAATGTCAACACGGGTGGCTCGTCAATGCCGAACTCCGGGGCG
TCATCACGCAGCTTCACCCCCCGGTCGACAGTGGACAACACGCCCGGGCG
CCCGCAGCCGGTGTTCCTGGCAGAGTTGTTGGACGATGACAGCGTGGTGC
AGTTCTACGAGGATTTTGCACGGCTGGCGTTTGGCGACTCGCGCGGTAGC
GTGATGACAACGTGCAAGCTGTTGAAGTACAAGACGAAGGAGGACATGGA
GGGCGCAGCAGCGGAGGATAGCCAGCGCTGGAACAACCACCTGCGCAAGG
GAGGGATTGCCAGCGAGGCGGGGATGAACCAGCTAGGGTTCAAGGACGGC
AAGGTCGAATGTGCGTACTGCTGGACAGTGAAGCGAGATGTATTCGACAT
ACCGATGTTGATTGTGATGAATGTGAGTAATACCAGCGTTCCCGTGCTGT
GAATGAACGCGGAACCGAAGGAGCAAGATTCCCCAGCTCCGTCGGCTGAG
CGCACGGAAGCCAGTCAGGAGATTAGTGCTGCCGGAGCACAGGCCGACAA
GCCGAAGACCGAGGCCAACGGCGACGGGACTGCAAATGGTGCCTCCGCGA
ACGGCCAGAAGCCTAACCCGAAAGACCCGTCGAGACCCCGGAGGAAGAAG
GCGAGACGGGCGTGTTTTGCTTGCCAGCGCGCACACTTGACTTGCG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005414-T2.utr3p1 | KJC3_005414-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005414-T2.utr5p1 | KJC3_005414-T2.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:2650970..2655652 - |
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