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KJC3_005460-T1, KJC3_005460-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005460-T1
Unique NameKJC3_005460-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:2802860..2804025-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005460-T1 ID=KJC3_005460-T1|Name=KJC3_005460-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1166bp|location=Sequence derived from alignment at ch4:2802860..2804025- (Aspergillus niger KJC3)
CTCGTGGATTCTCAGATCCCTTCACCATGCAATAGTCTGAGGCCTATCAC
TGGAATGGACTTGAAAAACCTCTCCAGCAATTGGAAGAAACTCCAGGGGA
CGCTGAAAAAGGAAAGCGTCTCCGCCACGAAACGGAAACCTTCAGACCGC
GAGACGGAGAATGGTGTGGTAAAGAAACGGAAAAGAGAAACTGTCGACGG
ACAACAAAAACCTGAGCGCAAACCGGTCTCAACCAAGAGAAAGAAGATGT
CTACGAACGGTACTGATGGCGGCGAGAATGGCACCGAGGAGCCTACAAAG
AAGTCGATCTCTCGGAGGAATTCTACGGCCGCTGTTGCGGAATCAAAGCC
GAAGATTAATGAAGGCCGTTCACCTACGTGAGCACACCTCTTGTTGCTGT
TTTGCGAGAGTTCTTTCTCTGTAATAACTACTAACGTTCTATTAGCGCGG
AGCTAGGAAAATATGTTGCGATGGATTGCGAAATGGTGGGCGTTGGCCCC
AATCCAGATCACGACTCCGCTCTCGCGCGAGTCAGTATTGTCAACTTCAA
CGGCGAACAAATATACGACTCTTACGTGAGACCCAAGGAAATGGTTACAG
ACTGGCGGACGCATGTCAGCGGCATCCTTCCGAAGCATATGGTGGAGGCA
CGAACACTCGAGCAGGTGCAGAAAGACGTTATCAATATCCTCGATGGGCG
AATACTCGTGGGACATGCGGTCAGCAACGACTTGGACGCTCTTCTTCTCA
GCCACCCTAAGCGCGACATCAGAGACACCAGCAAACATCCCCCGTACAGA
AAGATTGCTGGCGGCGGCTCCCCTAGGCTGAAGATGTTGGCTTCGGAGTT
TCTTGGGCTAGAAATCCAGGATGGCGCTCATTCTAGTGTGGAGGATGCTA
GGGCTACAATGCTTCTGTACCGGCGGGACAAGGACACATTCGAGCGGGAA
CATCTCAAGAAGTGGCCTGTGCGAGTAGTTGTCGAAAAGAAAGACCAAGA
CGATGATCAAAAGAAAAAGAAGAAGAAGAAGAAGAAGACCCGTAAGAGGT
GATGCGGTTTCCCGGATGCAATGGCTGGTTCTGTTCGATATACCCCAAGT
TCATGAAGTTGAAGGTTATCTATAGAAGATATAAGTAAATAGAATTTAGA
CAAGCATTATACTCAA
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Coding sequence (CDS) from alignment at ch4:2802860..2804025-

>KJC3_005460-T1 ID=KJC3_005460-T1|Name=KJC3_005460-T1|organism=Aspergillus niger KJC3|type=CDS|length=1860bp|location=Sequence derived from alignment at ch4:2802860..2804025- (Aspergillus niger KJC3)
CGCGGAGCTAGGAAAATATGTTGCGATGGATTGCGAAATGGTGGGCGTTG
GCCCCAATCCAGATCACGACTCCGCTCTCGCGCGAGTCAGTATTGTCAAC
TTCAACGGCGAACAAATATACGACTCTTACGTGAGACCCAAGGAAATGGT
TACAGACTGGCGGACGCATGTCAGCGGCATCCTTCCGAAGCATATGGTGG
AGGCACGAACACTCGAGCAGGTGCAGAAAGACGTTATCAATATCCTCGAT
GGGCGAATACTCGTGGGACATGCGGTCAGCAACGACTTGGACGCTCTTCT
TCTCAGCCACCCTAAGCGCGACATCAGAGACACCAGCAAACATCCCCCGT
ACAGAAAGATTGCTGGCGGCGGCTCCCCTAGGCTGAAGATGTTGGCTTCG
GAGTTTCTTGGGCTAGAAATCCAGGATGGCGCTCATTCTAGTGTGGAGGA
TGCTAGGGCTACAATGCTTCTGTACCGGCGGGACAAGGACACATTCGAGC
GGGAACATCTCAAGAAGTGGCCTGTGCGAGTAGTTGTCGAAAAGAAAGAC
CAAGACGATGATCAAAAGAAAAAGAAGAAGAAGAAGAAGAAGACCCGTAA
GAGGTGAATGGACTTGAAAAACCTCTCCAGCAATTGGAAGAAACTCCAGG
GGACGCTGAAAAAGGAAAGCGTCTCCGCCACGAAACGGAAACCTTCAGAC
CGCGAGACGGAGAATGGTGTGGTAAAGAAACGGAAAAGAGAAACTGTCGA
CGGACAACAAAAACCTGAGCGCAAACCGGTCTCAACCAAGAGAAAGAAGA
TGTCTACGAACGGTACTGATGGCGGCGAGAATGGCACCGAGGAGCCTACA
AAGAAGTCGATCTCTCGGAGGAATTCTACGGCCGCTGTTGCGGAATCAAA
GCCGAAGATTAATGAAGGCCGTTCACCTACCGCGGAGCTAGGAAAATATG
TTGCGATGGATTGCGAAATGGTGGGCGTTGGCCCCAATCCAGATCACGAC
TCCGCTCTCGCGCGAGTCAGTATTGTCAACTTCAACGGCGAACAAATATA
CGACTCTTACGTGAGACCCAAGGAAATGGTTACAGACTGGCGGACGCATG
TCAGCGGCATCCTTCCGAAGCATATGGTGGAGGCACGAACACTCGAGCAG
GTGCAGAAAGACGTTATCAATATCCTCGATGGGCGAATACTCGTGGGACA
TGCGGTCAGCAACGACTTGGACGCTCTTCTTCTCAGCCACCCTAAGCGCG
ACATCAGAGACACCAGCAAACATCCCCCGTACAGAAAGATTGCTGGCGGC
GGCTCCCCTAGGCTGAAGATGTTGGCTTCGGAGTTTCTTGGGCTAGAAAT
CCAGGATGGCGCTCATTCTAGTGTGGAGGATGCTAGGGCTACAATGCTTC
TGTACCGGCGGGACAAGGACACATTCGAGCGGGAACATCTCAAGAAGTGG
CCTGTGCGAGTAGTTGTCGAAAAGAAAGACCAAGACGATGATCAAAAGAA
AAAGAAGAAGAAGAAGAAGAAGACCCGTAAGAGGTGAATGGACTTGAAAA
ACCTCTCCAGCAATTGGAAGAAACTCCAGGGGACGCTGAAAAAGGAAAGC
GTCTCCGCCACGAAACGGAAACCTTCAGACCGCGAGACGGAGAATGGTGT
GGTAAAGAAACGGAAAAGAGAAACTGTCGACGGACAACAAAAACCTGAGC
GCAAACCGGTCTCAACCAAGAGAAAGAAGATGTCTACGAACGGTACTGAT
GGCGGCGAGAATGGCACCGAGGAGCCTACAAAGAAGTCGATCTCTCGGAG
GAATTCTACGGCCGCTGTTGCGGAATCAAAGCCGAAGATTAATGAAGGCC
GTTCACCTAC
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:00084083'-5' exonuclease activity
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
REX4KJC3_005460Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005460-T1KJC3_005460-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005460-T1.cdsKJC3_005460-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005460-T1.utr3p1KJC3_005460-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005460-T1.exon2KJC3_005460-T1.exon2Aspergillus niger KJC3exon
KJC3_005460-T1.exon1KJC3_005460-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005460-T1.utr5p1KJC3_005460-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG092646PE
DBxrefInterPro:IPR012337
DBxrefInterPro:IPR037431
DBxrefInterPro:IPR036397
DBxrefInterPro:IPR013520
DBxrefPFAM:PF00929
Product3'-5' exonuclease
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:2802860..2804025 -
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