|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:2849189..2851159+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005476-T2 ID=KJC3_005476-T2|Name=KJC3_005476-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1971bp|location=Sequence derived from alignment at ch4:2849189..2851159+ (Aspergillus niger KJC3)
CAAGTGCCAACTCTGCTATCCGACTTCGGTTCCATGGGTCAGAAACAAAA
CAAACAACAAGCGAGCATCCACATCTGAAGATTCTTAGAATACTATCTAG
GTAGCCCCAGTCCGACCAAGACACAGCCTCGCCTAACAAATCAGATTTTC
GCAGACTATGAACGTCATCCTTTTCCTCCCCACAGGGGCTCCCAAACCTG
ACGACATCCACAGGGCCAAAAGAGTCTGACAATCGATAGTCGGCCGCGTG
GTGGTCTCAGAAAGCAATAGTGCGACGATCGTTACATCACCGGGACAAAC
AACATCCCTCGCTCGGGTACCTGGCGAACGGTGTATCCGCATTGCGGAGG
CTTGTAGCCACTCAAATGGGTCCTCCCAAGACCAACACGACAGCAACGAT
GATGAAACATCGCCCCCAAGACAGCAAGGGATCGGCCATAACGCGCGGGA
CGTGGAGCCGAGCGAACCATTTTGGAATCCGGAGAATCAGATGGGCGTTC
GTTCACGCGATCTTCAGATCGGCATTCTACTGCGTTTCACACGCCGATTT
CTGTGTCAAGTTCGGGTGTTCCAAAATCCCAAGGGGTTGGGTCGGGTGCC
AACCATCCCTAACGATGGGATAATCGGATGGATCATATTTAGGTTATGCC
TGCCAGTGAGTTCTGCTGATATCAGATGTTTCATCTCGTTCTTTTATTAC
TTTTCTCTCGTTTTTTCTTGCCGGTATATAACTACATACATACATACATA
CAAAATCCCACTCGTTCGCTCATTTGAAGAAAACCGAAAAGGAAAAATAA
CCTCAAAACTTCCATTCTTTCATCACAATGCCTAAAGCTAGTGCCACCAA
GATCATTTCCCTTTCTATCTTCTCCCTTCTCACCACCGCTTCTGCCTACA
CAATCGTAGGCTGCTATAGCAGTCCCGGCCAGCTAACCTCAGCGGGCACC
TTTCAATTCCAATCCGAAGGCTACTGCCAGCAAATTTGCACGAAGCAAAA
CAAGCCCATCTTCGCCCTCTACAACGGCGACGAATGCTACTGCGGCGATG
CATTGCCCCCTTCAACAGCCAAGGTCTCTTCCACACAATGTCAAACCCCT
TGCTCCGGATTTCCATCTGATCCTTGTACGTATACTCCCATAAGGCCCTC
GTTAGTCAGCCCAACAGGACCCCATACTAATGCATAAATCACTATAGGCG
GCGGCACCAATGCATGGCTAATCAACAACTCCACCACCATCTCGCAGCCC
ACAACCGACAACAACATCGTCACAGAACTGAAACGTGAATCCACAGACAA
TGTCGAGAATGGCATCGTGATTGCCCCGGAGTCCGATGACTCCGACTCAT
CATCAGGCAACTCCAACTCTCCTGAGACCATGACAGTCAATCCTACCATG
GTGGAGACCGGCATCCCTATCGCCCCCAGCTCCGGTGCAGACGGAGGCGC
AGCTAAATCTACCATCCCGAGTGTAATTCTTACGGCGCCGTCCATGACGG
GCGTCACTGTTCCGGCTACTGGTGCTGCTGCGGCGTCGTCTATGGTTGTT
GCGGCGTCGTCTGCTTCGGCGTCTGCCACGGCTGCTGCATCCGGAGCGGC
GAGCAGTGGTTCGGCCGCCGCGAGCCCATCAACTAGTGCGGGTGCCGCTG
CTGCTGTCGCTGGTGCTCCTGCTGGTGGGATGATCGGGGGTGTGGTTATG
GCGGCAATTGTTGCGCTCGGACTGTAGATATGTCTTTCTACATCCTACAT
TCTAAGCGGATGGAGTGGATGGATGGATGGACTGATTGATTCAAGCGGGG
ATGATTCATCATGTATAAATAGCTACGGATGTACGGTATGGGTACAGGGC
TAGGCATTGAAGGTACTTACCTATAATAGGCTGGAGTTAATCGCGGGTTC
GATGCGACATGTACTTTTGCTTCTGCTGAGCAGAAAGTGAATTTCCCAGT
GATAGTCACTCTTGTTTTAAG back to topCoding sequence (CDS) from alignment at ch4:2849189..2851159+ >KJC3_005476-T2 ID=KJC3_005476-T2|Name=KJC3_005476-T2|organism=Aspergillus niger KJC3|type=CDS|length=1656bp|location=Sequence derived from alignment at ch4:2849189..2851159+ (Aspergillus niger KJC3)
ATGCCTAAAGCTAGTGCCACCAAGATCATTTCCCTTTCTATCTTCTCCCT
TCTCACCACCGCTTCTGCCTACACAATCGTAGGCTGCTATAGCAGTCCCG
GCCAGCTAACCTCAGCGGGCACCTTTCAATTCCAATCCGAAGGCTACTGC
CAGCAAATTTGCACGAAGCAAAACAAGCCCATCTTCGCCCTCTACAACGG
CGACGAATGCTACTGCGGCGATGCATTGCCCCCTTCAACAGCCAAGGTCT
CTTCCACACAATGTCAAACCCCTTGCTCCGGATTTCCATCTGATCCTTGC
GGCGGCACCAATGCATGGCTAATCAACAACTCCACCACCATCTCGCAGCC
CACAACCGACAACAACATCGTCACAGAACTGAAACGTGAATCCACAGACA
ATGTCGAGAATGGCATCGTGATTGCCCCGGAGTCCGATGACTCCGACTCA
TCATCAGGCAACTCCAACTCTCCTGAGACCATGACAGTCAATCCTACCAT
GGTGGAGACCGGCATCCCTATCGCCCCCAGCTCCGGTGCAGACGGAGGCG
CAGCTAAATCTACCATCCCGAGTGTAATTCTTACGGCGCCGTCCATGACG
GGCGTCACTGTTCCGGCTACTGGTGCTGCTGCGGCGTCGTCTATGGTTGT
TGCGGCGTCGTCTGCTTCGGCGTCTGCCACGGCTGCTGCATCCGGAGCGG
CGAGCAGTGGTTCGGCCGCCGCGAGCCCATCAACTAGTGCGGGTGCCGCT
GCTGCTGTCGCTGGTGCTCCTGCTGGTGGGATGATCGGGGGTGTGGTTAT
GGCGGCAATTGTTGCGCTCGGACTGTAGATGCCTAAAGCTAGTGCCACCA
AGATCATTTCCCTTTCTATCTTCTCCCTTCTCACCACCGCTTCTGCCTAC
ACAATCGTAGGCTGCTATAGCAGTCCCGGCCAGCTAACCTCAGCGGGCAC
CTTTCAATTCCAATCCGAAGGCTACTGCCAGCAAATTTGCACGAAGCAAA
ACAAGCCCATCTTCGCCCTCTACAACGGCGACGAATGCTACTGCGGCGAT
GCATTGCCCCCTTCAACAGCCAAGGTCTCTTCCACACAATGTCAAACCCC
TTGCTCCGGATTTCCATCTGATCCTTGCGGCGGCACCAATGCATGGCTAA
TCAACAACTCCACCACCATCTCGCAGCCCACAACCGACAACAACATCGTC
ACAGAACTGAAACGTGAATCCACAGACAATGTCGAGAATGGCATCGTGAT
TGCCCCGGAGTCCGATGACTCCGACTCATCATCAGGCAACTCCAACTCTC
CTGAGACCATGACAGTCAATCCTACCATGGTGGAGACCGGCATCCCTATC
GCCCCCAGCTCCGGTGCAGACGGAGGCGCAGCTAAATCTACCATCCCGAG
TGTAATTCTTACGGCGCCGTCCATGACGGGCGTCACTGTTCCGGCTACTG
GTGCTGCTGCGGCGTCGTCTATGGTTGTTGCGGCGTCGTCTGCTTCGGCG
TCTGCCACGGCTGCTGCATCCGGAGCGGCGAGCAGTGGTTCGGCCGCCGC
GAGCCCATCAACTAGTGCGGGTGCCGCTGCTGCTGTCGCTGGTGCTCCTG
CTGGTGGGATGATCGGGGGTGTGGTTATGGCGGCAATTGTTGCGCTCGGA
CTGTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005476-T2.utr3p1 | KJC3_005476-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | SECRETED:SignalP(1-23) |
| DBxref | InterPro:IPR002889 |
| DBxref | PFAM:PF01822 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:2849189..2851159 + |
|
