You are here

Home

KJC3_005501-T1, KJC3_005501-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005501-T1
Unique NameKJC3_005501-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:2916735..2919380+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005501-T1 ID=KJC3_005501-T1|Name=KJC3_005501-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2646bp|location=Sequence derived from alignment at ch4:2916735..2919380+ (Aspergillus niger KJC3)
CTTCGCAACCGGAGGTGATGCTGTAGCCTAGAACTAGCTGGAATCCATCA
GCCCACGTCCCTACAGAGTATTTGCCCCTGGGCGGTGGAGGGATGCCGGC
AGAATATTAGTCCCCAATGAGAGCATTTGGCTAACCCCAAGAAAGCTTAG
TGTTAGTCATGTCATCAACTGCAAATCAGAAGAGGAACCGGGAGAACTGG
AAAGGGAAAGCCGGGACAATGAAAGTGATAAGCCTTCCAGATGAAGATAA
CAATCGCGGCATAATCTTCACGACCCATGTTCAGACCCTTTGAGGTTCAT
CCACGGCAAGGATGATGACCCAGGGAACCCCAAGGCTAATCACAATAAGT
TGGTGACCGGCGGGATCGGAGAGTAAGACGGAAATGAATTAATCTCGTTG
CTTGAACCGCTAAGCACTGCGGGTGCTCGAGCCAAGCATGGATGGTGCCG
CGCGGGTCCTGTCATTGGCGGGTGACTGAACTTTTCGTGGCCAAAATGAA
GAAAAAAAATTTCCCAAAAAATAATACGGCGAAGCCCGAGCAGGAAAGCC
AGAGGAGTCATTCTCCGCCAACAACATCCCATCTTCGCCGGATCCAACTC
TACCTTAGCTTAGTCCCTGCTCTAGTGCCAACTGCGAGGGGGGCAAAACT
CCTCTTTATCCCCCATCCGGCCCTGAGATTTTTCCCGCCATGCAGCTGGG
CTTGCATTAAATCCTCCTAGGTTCTCTTCAACGGCTGCGTTTCGATCTCT
GAAACTTGCGGCCTCAACGTCTTTTGCTTTTCCCGAGGAACCCTCCTGCG
CCAGTTCGCAGACCCTTTATCACTATATCCAGCATGGCTGATACCATGCG
TGACGAGGAGAAGGGCCACCGCGCCGCTCCAGCCGTAGAGTCGGTCTCGT
CTCCCTCGGAAAGTGGAAAAGAAATGGCCTCCTTCCCTTCTTCAGGGAAT
GCCTGGACGAGGCTCAACGCTCGAATTCAATCCATCAAATTCCTCGAAAG
CCGCGGTATCGAGCGTGTTCCGGAGTCCGAGCGCTACGCTACCTCCGCGT
CCAATTACATGCAAATGGCTCTGCTTTGGTTCAGTACGAACATCACCGCT
AACAACATTGCGGTTGGAATGTATGGGCCACTGGACTACTCTCTGAGTTT
CGTTGACTCGGCACTCTGTGCGGTGTTCGGTGCTTTCCTTGGTGCGGCAG
GTGTGGCGTATATGGGAACCTTCGGACCGCAGAGCGGTAATCGAACAATG
GTAAGCAACGTCAAGGCCATCTGCTGGAGAAATTATAGTACTAACAACAG
AAACTTATAGGTTGTCGCGAGATATTTCATGGGCTACTACCCGAGTAAGA
TTGCTTGTCTTCTGAACATTATCATCATGTTGGGTTATGGAATGATCGAC
TGCCTCGTGGGTGGCCAGGTGCTGTCCGCGGTTGCTGATGGTGGGTTAAC
GGTGGTGGTGGGAATCATCATCATTGCCATCATCACGTGGATCGTCGTGG
TCTTTGGTATGGCGCCTTTCCACGTGTACGAGCGATGGGCCTGGGTGCCT
CAACTCATCGCCATTTTCGTCTTGGTCGGCAGTGCCGGCCCGAAATTCGA
CACCAACATCTCCTCCACTGGCGACACCCAGACCATCAACGCCAACCGTC
TCACCTTCTTCTCGCTCTGCCTTTCCAGTTCAGTTGCCTGGGCCCCTGCT
GGTGCTGATTTCTTCGTCTACTTCCCACCCACCACCTCGAAGTGGAAGAC
TTTCACTCTCACCCTCTTCGGTGTCGGCCTTGCCCTCTCTTTTGCCAACC
TTATGGGCATCGGCCTCGCTAGTGGCACGCTAACGAACCCATCCTGGGCG
GAGGCCTACGACACCTCTGCTGGAGCTCTCATTATCGCCGGATATGACGG
TCTCGGAGGATTTGGCAAGTTCTTGGGCGTCCTCGTCGCCCTGGGTCTGA
TTGCCAACAACATCCCTGGAACTTACTCTGCCACCCTGGGCTTCCAGATC
ATGGGCCGCCACCTCGGCAGCCTTCCCAGATGGTTCCTCTCCTGTGTTTG
TGTGATCATCTACACTGCCTGCGCCCTAGGTGGCCGGAACCACCTCTACG
ATATCTTCGAAAACTTCTTGGCCTTGATGGGTTATTGGGTAACCATCTAT
CTTACCATCGCCCTCGAAGAACACCTCATCTTCCGCCGCACCCGCGGCTT
TGATTGGGATGCCTGGGCTGACCGGTCCAAGTTGCCCCTCGGCCTTGCTG
CTCTGGCTGCGTTCTTGATCGGATGGGCGGGTGCGATCGTCTGCATGGAC
CAAATATGGTATGTTGGCCCGATTGCCAGGATGGTTGGCTCGGACGGCGC
GGACCTGGGTATCTGGGTCGGTGTTTCCTGGGCGATGCTTGTGTTCCCGC
CTCTGCGGTATTTGGAGCTGCAGAAGATTGGTCGGTAAATCCACTCTGCA
TTGTTCCGGAGTAAAAATAGAAGTGATGGGGAGCATGTGTCCTTCTGTTT
GAGACATGAGGGATGTTAAAGATGTATGCCTAATCGATGCTATATAACGG
ATTCTTCCGCACTAGATAATGTGTTATGCTATGAGCAAAAATATCAATAT
ACCAATTTCAATTCATCATAGTCCAGCAACAACCATCTACGATGGC
back to top

Coding sequence (CDS) from alignment at ch4:2916735..2919380+

>KJC3_005501-T1 ID=KJC3_005501-T1|Name=KJC3_005501-T1|organism=Aspergillus niger KJC3|type=CDS|length=3090bp|location=Sequence derived from alignment at ch4:2916735..2919380+ (Aspergillus niger KJC3)
ATGGCTGATACCATGCGTGACGAGGAGAAGGGCCACCGCGCCGCTCCAGC
CGTAGAGTCGGTCTCGTCTCCCTCGGAAAGTGGAAAAGAAATGGCCTCCT
TCCCTTCTTCAGGGAATGCCTGGACGAGGCTCAACGCTCGAATTCAATCC
ATCAAATTCCTCGAAAGCCGCGGTATCGAGCGTGTTCCGGAGTCCGAGCG
CTACGCTACCTCCGCGTCCAATTACATGCAAATGGCTCTGCTTTGGTTCA
GTACGAACATCACCGCTAACAACATTGCGGTTGGAATGTATGGGCCACTG
GACTACTCTCTGAGTTTCGTTGACTCGGCACTCTGTGCGGTGTTCGGTGC
TTTCCTTGGTGCGGCAGGTGTGGCGTATATGGGAACCTTCGGACCGCAGA
GCGGTAATCGAACAATGGTTGTCGCGAGATATTTCATGGGCTACTACCCG
AGTAAGATTGCTTGTCTTCTGAACATTATCATCATGTTGGGTTATGGAAT
GATCGACTGCCTCGTGGGTGGCCAGGTGCTGTCCGCGGTTGCTGATGGTG
GGTTAACGGTGGTGGTGGGAATCATCATCATTGCCATCATCACGTGGATC
GTCGTGGTCTTTGGTATGGCGCCTTTCCACGTGTACGAGCGATGGGCCTG
GGTGCCTCAACTCATCGCCATTTTCGTCTTGGTCGGCAGTGCCGGCCCGA
AATTCGACACCAACATCTCCTCCACTGGCGACACCCAGACCATCAACGCC
AACCGTCTCACCTTCTTCTCGCTCTGCCTTTCCAGTTCAGTTGCCTGGGC
CCCTGCTGGTGCTGATTTCTTCGTCTACTTCCCACCCACCACCTCGAAGT
GGAAGACTTTCACTCTCACCCTCTTCGGTGTCGGCCTTGCCCTCTCTTTT
GCCAACCTTATGGGCATCGGCCTCGCTAGTGGCACGCTAACGAACCCATC
CTGGGCGGAGGCCTACGACACCTCTGCTGGAGCTCTCATTATCGCCGGAT
ATGACGGTCTCGGAGGATTTGGCAAGTTCTTGGGCGTCCTCGTCGCCCTG
GGTCTGATTGCCAACAACATCCCTGGAACTTACTCTGCCACCCTGGGCTT
CCAGATCATGGGCCGCCACCTCGGCAGCCTTCCCAGATGGTTCCTCTCCT
GTGTTTGTGTGATCATCTACACTGCCTGCGCCCTAGGTGGCCGGAACCAC
CTCTACGATATCTTCGAAAACTTCTTGGCCTTGATGGGTTATTGGGTAAC
CATCTATCTTACCATCGCCCTCGAAGAACACCTCATCTTCCGCCGCACCC
GCGGCTTTGATTGGGATGCCTGGGCTGACCGGTCCAAGTTGCCCCTCGGC
CTTGCTGCTCTGGCTGCGTTCTTGATCGGATGGGCGGGTGCGATCGTCTG
CATGGACCAAATATGGTATGTTGGCCCGATTGCCAGGATGGTTGGCTCGG
ACGGCGCGGACCTGGGTATCTGGGTCGGTGTTTCCTGGGCGATGCTTGTG
TTCCCGCCTCTGCGGTATTTGGAGCTGCAGAAGATTGGTCGGTAAATGGC
TGATACCATGCGTGACGAGGAGAAGGGCCACCGCGCCGCTCCAGCCGTAG
AGTCGGTCTCGTCTCCCTCGGAAAGTGGAAAAGAAATGGCCTCCTTCCCT
TCTTCAGGGAATGCCTGGACGAGGCTCAACGCTCGAATTCAATCCATCAA
ATTCCTCGAAAGCCGCGGTATCGAGCGTGTTCCGGAGTCCGAGCGCTACG
CTACCTCCGCGTCCAATTACATGCAAATGGCTCTGCTTTGGTTCAGTACG
AACATCACCGCTAACAACATTGCGGTTGGAATGTATGGGCCACTGGACTA
CTCTCTGAGTTTCGTTGACTCGGCACTCTGTGCGGTGTTCGGTGCTTTCC
TTGGTGCGGCAGGTGTGGCGTATATGGGAACCTTCGGACCGCAGAGCGGT
AATCGAACAATGGTTGTCGCGAGATATTTCATGGGCTACTACCCGAGTAA
GATTGCTTGTCTTCTGAACATTATCATCATGTTGGGTTATGGAATGATCG
ACTGCCTCGTGGGTGGCCAGGTGCTGTCCGCGGTTGCTGATGGTGGGTTA
ACGGTGGTGGTGGGAATCATCATCATTGCCATCATCACGTGGATCGTCGT
GGTCTTTGGTATGGCGCCTTTCCACGTGTACGAGCGATGGGCCTGGGTGC
CTCAACTCATCGCCATTTTCGTCTTGGTCGGCAGTGCCGGCCCGAAATTC
GACACCAACATCTCCTCCACTGGCGACACCCAGACCATCAACGCCAACCG
TCTCACCTTCTTCTCGCTCTGCCTTTCCAGTTCAGTTGCCTGGGCCCCTG
CTGGTGCTGATTTCTTCGTCTACTTCCCACCCACCACCTCGAAGTGGAAG
ACTTTCACTCTCACCCTCTTCGGTGTCGGCCTTGCCCTCTCTTTTGCCAA
CCTTATGGGCATCGGCCTCGCTAGTGGCACGCTAACGAACCCATCCTGGG
CGGAGGCCTACGACACCTCTGCTGGAGCTCTCATTATCGCCGGATATGAC
GGTCTCGGAGGATTTGGCAAGTTCTTGGGCGTCCTCGTCGCCCTGGGTCT
GATTGCCAACAACATCCCTGGAACTTACTCTGCCACCCTGGGCTTCCAGA
TCATGGGCCGCCACCTCGGCAGCCTTCCCAGATGGTTCCTCTCCTGTGTT
TGTGTGATCATCTACACTGCCTGCGCCCTAGGTGGCCGGAACCACCTCTA
CGATATCTTCGAAAACTTCTTGGCCTTGATGGGTTATTGGGTAACCATCT
ATCTTACCATCGCCCTCGAAGAACACCTCATCTTCCGCCGCACCCGCGGC
TTTGATTGGGATGCCTGGGCTGACCGGTCCAAGTTGCCCCTCGGCCTTGC
TGCTCTGGCTGCGTTCTTGATCGGATGGGCGGGTGCGATCGTCTGCATGG
ACCAAATATGGTATGTTGGCCCGATTGCCAGGATGGTTGGCTCGGACGGC
GCGGACCTGGGTATCTGGGTCGGTGTTTCCTGGGCGATGCTTGTGTTCCC
GCCTCTGCGGTATTTGGAGCTGCAGAAGATTGGTCGGTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_005501KJC3_005501Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005501-T1.utr5p1KJC3_005501-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005501-T1.exon1KJC3_005501-T1.exon1Aspergillus niger KJC3exon
KJC3_005501-T1.exon2KJC3_005501-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005501-T1.cdsKJC3_005501-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005501-T1.utr3p1KJC3_005501-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005501-T1KJC3_005501-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR026030
DBxrefInterPro:IPR001248
DBxrefInterPro:IPR038271
DBxrefPFAM:PF02133
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:2916735..2919380 +
Powered by Drupal