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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:2924694..2926536+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005504-T1 ID=KJC3_005504-T1|Name=KJC3_005504-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1843bp|location=Sequence derived from alignment at ch4:2924694..2926536+ (Aspergillus niger KJC3)
CCCAAAAGTAAGCGCCCAGAAGAAATATGAAGTAGGCCCCGACCTACAGA
TCCCCCCGTCAGCCTTGCGCTCAGGAGTAATATTTGACACTGTCGTGGCC
ACACACAACATGGGACGATCTACGAGGAATTTGTATGAGCCCGTCGCTCG
CACCTCGTTTGACGAGGACGAAGAGATTGAATTGGCGAGGGATGATTCCA
TAGATGGGTATCCCACTCGTTCTCGAGTCTCCCGCGTCGATCGTCTGATA
GCCACCTTGTCTCAGACATCCCGAACAGTGAAGTGGCGCATACGACGGCG
CTACTTTACTGCTACCTTCACAGTTCGTAGGATTGTCTTTTTTCTGTTCT
GCATCCTGTCTGGCCTGATTATTACCACCTTTGTATTATTCCCTTCCTAT
ACTCACTTGCCACCTCACTATCGGGCCCTGCAATCAGCCGTCCAAGGCTC
CACAACTTCAGGCCGGGGAAATATACACAACTCTACCGTCTTCATCGCGG
TCAGTCTTTATGACAAGACTGGAGCTTTGGCGGGTGGCGCGTGGGGCCAG
AGCCTCCTGGATCTGATCGACATGATCGGGCCGGACCGTGTCTTCCTGAG
CATCTACGAAAATGACAGCGATGCGAGTGGCGAGCAAGCATTGTGGGCAC
TAAGTGATCGAGTCCCTTGTAACAAATCTATTGTGTACGACAAGCATTTC
GACTTCACGGGCTTTCCCACCGTTACGTTACCCGATGGTTCCAGCCACGT
GCGCCGCGTGGCCTTTCTAGCAGAGGTCCGCAACCGGGCCTTACGTCCCT
TAGATGATCTGAACCATCGGTTCGACCGCCTGCTCTTCCTGAACGATGTC
TACTTCGATCCCCTGGATGCCTTGCAGCTTTTGTTCTCGACACATACCCG
CGACGGCCGTCCTGACTATCGAGCTGCGTGTGCAGTCGACTTTATCAACC
CGTTCAAGTTCTACGATACCTTTGCCTCGCGCGACCTTGAGGGTTACGGC
ATGGGACTCCCGTTCTTTCCATGGTTCACCACTGCGGGTAAAGCGCAGAG
CCGCTCCGATGTTCTGCAGGAAACTGATGCAGTCCGGGTGCGTAGCTGTT
GGGGAGGAATGGTTGCCTTCGATGCCGGGTTTTTCCAGAGCGGGACTCCA
ACAGCAGCAGACACGAATCAGCCAACCTATTACCGCGGACGCCGCGTGCC
TGTGCAATTTCGCAGTGAGGAGGATCTTTTCTGGGAATCGTCTGAATGTT
GTTTGATACACGCAGATATTCAAAGCTGGCCCTCTTCGTCTTCTATGGAT
GCCCAGAATGTTGAAGGAGAGGATGAGGAGGATTCAGGCATCTACATGAA
TCCTTTCATTCGTGTGGCCTACCACCCTCGCTCTTTCAGTTGGCTTAGAA
TTACCCGTCGGGTGGAGAGGCTCTATTCTGTCGCCCATTGGCTTTCCAGC
ACCGCGTTTGGCCTTCCGTTTTATAACCCCCGCCGAGCAGAGATCCCAGG
CGAGGAAGTACAAGAGACGGTCTGGGTTGAGGATGAATCGAGTGAAGGGG
GTTCATTTTCGAAGGTGACACGAGTTGCTAATTACGATGGATACTGCGGG
AGGTGGGACTTACAGGTCCTTTCTCGTCGAGAGGAGACTGGCGAGGGAGG
TTGGGTTTCAGTCCCTGTCCCGAACTTGCCGTCTTAAGACTGCCTGCTCG
GGCTGCAGTCAATCAATATTTTCCTCTCATGTTGATTTTCATATAGACTA
TGGCACTATGTTTAATGACTGCGTATGTAGAGGGGTCCAAAGAAAGGAAT
AGCTCAGTATTATCATCTAACGCAAAGCATATTTCAAGGCATA back to topCoding sequence (CDS) from alignment at ch4:2924694..2926536+ >KJC3_005504-T1 ID=KJC3_005504-T1|Name=KJC3_005504-T1|organism=Aspergillus niger KJC3|type=CDS|length=1578bp|location=Sequence derived from alignment at ch4:2924694..2926536+ (Aspergillus niger KJC3)
ATGGGACGATCTACGAGGAATTTGTATGAGCCCGTCGCTCGCACCTCGTT
TGACGAGGACGAAGAGATTGAATTGGCGAGGGATGATTCCATAGATGGGT
ATCCCACTCGTTCTCGAGTCTCCCGCGTCGATCGTCTGATAGCCACCTTG
TCTCAGACATCCCGAACAGTGAAGTGGCGCATACGACGGCGCTACTTTAC
TGCTACCTTCACAGTTCGTAGGATTGTCTTTTTTCTGTTCTGCATCCTGT
CTGGCCTGATTATTACCACCTTTGTATTATTCCCTTCCTATACTCACTTG
CCACCTCACTATCGGGCCCTGCAATCAGCCGTCCAAGGCTCCACAACTTC
AGGCCGGGGAAATATACACAACTCTACCGTCTTCATCGCGGTCAGTCTTT
ATGACAAGACTGGAGCTTTGGCGGGTGGCGCGTGGGGCCAGAGCCTCCTG
GATCTGATCGACATGATCGGGCCGGACCGTGTCTTCCTGAGCATCTACGA
AAATGACAGCGATGCGAGTGGCGAGCAAGCATTGTGGGCACTAAGTGATC
GAGTCCCTTGTAACAAATCTATTGTGTACGACAAGCATTTCGACTTCACG
GGCTTTCCCACCGTTACGTTACCCGATGGTTCCAGCCACGTGCGCCGCGT
GGCCTTTCTAGCAGAGGTCCGCAACCGGGCCTTACGTCCCTTAGATGATC
TGAACCATCGGTTCGACCGCCTGCTCTTCCTGAACGATGTCTACTTCGAT
CCCCTGGATGCCTTGCAGCTTTTGTTCTCGACACATACCCGCGACGGCCG
TCCTGACTATCGAGCTGCGTGTGCAGTCGACTTTATCAACCCGTTCAAGT
TCTACGATACCTTTGCCTCGCGCGACCTTGAGGGTTACGGCATGGGACTC
CCGTTCTTTCCATGGTTCACCACTGCGGGTAAAGCGCAGAGCCGCTCCGA
TGTTCTGCAGGAAACTGATGCAGTCCGGGTGCGTAGCTGTTGGGGAGGAA
TGGTTGCCTTCGATGCCGGGTTTTTCCAGAGCGGGACTCCAACAGCAGCA
GACACGAATCAGCCAACCTATTACCGCGGACGCCGCGTGCCTGTGCAATT
TCGCAGTGAGGAGGATCTTTTCTGGGAATCGTCTGAATGTTGTTTGATAC
ACGCAGATATTCAAAGCTGGCCCTCTTCGTCTTCTATGGATGCCCAGAAT
GTTGAAGGAGAGGATGAGGAGGATTCAGGCATCTACATGAATCCTTTCAT
TCGTGTGGCCTACCACCCTCGCTCTTTCAGTTGGCTTAGAATTACCCGTC
GGGTGGAGAGGCTCTATTCTGTCGCCCATTGGCTTTCCAGCACCGCGTTT
GGCCTTCCGTTTTATAACCCCCGCCGAGCAGAGATCCCAGGCGAGGAAGT
ACAAGAGACGGTCTGGGTTGAGGATGAATCGAGTGAAGGGGGTTCATTTT
CGAAGGTGACACGAGTTGCTAATTACGATGGATACTGCGGGAGGTGGGAC
TTACAGGTCCTTTCTCGTCGAGAGGAGACTGGCGAGGGAGGTTGGGTTTC
AGTCCCTGTCCCGAACTTGCCGTCTTAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005504-T1.utr5p1 | KJC3_005504-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005504-T1.utr3p1 | KJC3_005504-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | CAZy:GT69 |
| DBxref | InterPro:IPR021047 |
| DBxref | PFAM:PF11735 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:2924694..2926536 + |
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