|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:3050073..3052081+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005551-T1 ID=KJC3_005551-T1|Name=KJC3_005551-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2009bp|location=Sequence derived from alignment at ch4:3050073..3052081+ (Aspergillus niger KJC3)
GTTCCTTCGCACAACCCCAAGTCCACTTCATCCTCCTACCCTCAACGCAA
TGGAGACACACCCACACCCTCCATACAAACACCCCATCACCTTCTGGCTC
GTATTCCTATCCCTCTGCCTCCTCTCCTTTGTCTCCGCCCTAGACGGCGC
CATCATCAGCACTGCTCTCCCCAAAGTAACCACCTCTCTCGGCGGTGAAA
CAGACTACATCTGGATCGCCAACAGCTTCACCATCGCCCAGACAATCATA
CAACCATTCCTCGCGCAGCTCTGCGACATTTATGGCCGACGCAACCCCAT
CCTAATCTCGGTGGCCCTATTCCTCCTAGGCAGCGGCCTAGCGGGCGGCG
CCTCCACTGTGGGCCAACTGATCGGCGGCCGCACAGTCCAAGGGCTCGGC
TCAGGCGGCATCTACATCCTCGTGGACCTGATCGTATGTGATCTAGTCCC
CCAGCGCGAGCGCGGCCAATACCTAGGCATCGTACTATCTCTCGCAGCTG
TAGGCGCCGTCCTAGGCCCTGTGCTCGGCGGCGCCCTCGCCCAAGCCAAT
TGGCGCTGGGTCTTCTACCTCAACCTGCCCCTCGCCGGGCCCGTACTTCT
GTTCATGCTCTTCTTCCTGCGTCTTGATGTCCCCCAACCCTCTTCCTCCC
CCTCCCTCCTCCGTATCGACTGGCCCGGCAACATCCTCTTCGCCGGCTGC
ATCCTCTCCCAACTCCTCGCGCTCGTCGGCGGCGGCACCCTCCACCCCTG
GTCCTCCCCCTCAACCCTCATCCCCCTGATAATCGGCATCGCGGGCTGGA
TTCTCTTCCACATCTACGAAGCCCTCCCTGCCCGATGGTGTCCCCATCCC
TGCATGCCGCCCCACCTCTTCGCCACCCGTAACAGCCTCCTCGGCTTCGT
CCTCGCCTTCGACGCCGCCCTCCTCATGCAATGGACCCTCTACTTTCTCC
CTATCTACTTCCAGGGAGTACAGCGCAAGTCCCCGCTAACATCAGGAATT
GACCTCCTCCCCTGCAGTGCCTTCCTCATCCCCTTCGCCATGGTCGCCGG
CACCATCATGTCCCGCACGGGGCTGTGCCGCCCACTGCACTTCATCGGCT
TCGCGGCCCTCTCTCTCGCGTTAGGCCTCTTCACTCCGCTCTCCGCACAC
TCTCCCCGCGCAGCATGGGTATGTGTCCAGCTCCCCGCTGCACTAGGCCA
GGGCTTCCTAGCCACGACTATCCTCCCTGCTATTCAATCTTCCCTGGGGC
CCAACGATATCGCTAGTTCTACGGGCGTGTATGCGTTCCTGCGCTCGCTG
GCGTTTGTGTGGGGATCTACGGCACCCGGGATTGTGTTTAATGCAAGGGT
GGATGTCTATGCGAGGAGGATTACCACTGATGAGAAGCTGAGGGAGAGGT
TGCTGGACGGGAGGGCATATGGCGCGGCGGCGGAGTTTGCGGGGAGTTGG
GGGGCGGGGCTTGACGTGGTGCAGAGGGAGCAGGTTAGGGAGGTGTATCG
GCTGGCGTTGAGGACGGTGTGGTTTGTGGGGTTGGCGTTTGCGTTGGTGG
GGGTGGTGGTTGGGTTGGGGATGGGGAGAGTGGTTTTACAGGGGGGGTTG
GAGGAGAATGGGTACGGGTTGAAGGAGAAGGGGGATGAAAAGGTTGTGGA
TGGGAGGGAGGGGAGTAACCGGGTGGAAGAGGTGTTTCATGCTGTAGAAA
CGGGGAAGAGGGAAGAAACTGGAGGTAGGGCTTGAGATTAAGGTTTAGTG
CTTATGTCTCTGCAGATGCATGATTTCGGGGATTTTGTTTATTGTAAGCG
GGGATGTAGAGGTAAAAGTTTGAGTGTGGAGATTGTGCAGATATAGAAGT
AATAGATGCTTACTGGTAGGCACTAATAGACAGAGGGCCCAAGGCAGATT
TCTACAAATGCATGTTTAATAGCGAGGCTCTCTGTGGTCTACATAAGTAC
TTATAAAACTTCCGCAATGTAGGTTAAGACTCACGCTAGGAAATATACCA
CAATTTATG back to topCoding sequence (CDS) from alignment at ch4:3050073..3052081+ >KJC3_005551-T1 ID=KJC3_005551-T1|Name=KJC3_005551-T1|organism=Aspergillus niger KJC3|type=CDS|length=1686bp|location=Sequence derived from alignment at ch4:3050073..3052081+ (Aspergillus niger KJC3)
ATGGAGACACACCCACACCCTCCATACAAACACCCCATCACCTTCTGGCT
CGTATTCCTATCCCTCTGCCTCCTCTCCTTTGTCTCCGCCCTAGACGGCG
CCATCATCAGCACTGCTCTCCCCAAAGTAACCACCTCTCTCGGCGGTGAA
ACAGACTACATCTGGATCGCCAACAGCTTCACCATCGCCCAGACAATCAT
ACAACCATTCCTCGCGCAGCTCTGCGACATTTATGGCCGACGCAACCCCA
TCCTAATCTCGGTGGCCCTATTCCTCCTAGGCAGCGGCCTAGCGGGCGGC
GCCTCCACTGTGGGCCAACTGATCGGCGGCCGCACAGTCCAAGGGCTCGG
CTCAGGCGGCATCTACATCCTCGTGGACCTGATCGTATGTGATCTAGTCC
CCCAGCGCGAGCGCGGCCAATACCTAGGCATCGTACTATCTCTCGCAGCT
GTAGGCGCCGTCCTAGGCCCTGTGCTCGGCGGCGCCCTCGCCCAAGCCAA
TTGGCGCTGGGTCTTCTACCTCAACCTGCCCCTCGCCGGGCCCGTACTTC
TGTTCATGCTCTTCTTCCTGCGTCTTGATGTCCCCCAACCCTCTTCCTCC
CCCTCCCTCCTCCGTATCGACTGGCCCGGCAACATCCTCTTCGCCGGCTG
CATCCTCTCCCAACTCCTCGCGCTCGTCGGCGGCGGCACCCTCCACCCCT
GGTCCTCCCCCTCAACCCTCATCCCCCTGATAATCGGCATCGCGGGCTGG
ATTCTCTTCCACATCTACGAAGCCCTCCCTGCCCGATGGTGTCCCCATCC
CTGCATGCCGCCCCACCTCTTCGCCACCCGTAACAGCCTCCTCGGCTTCG
TCCTCGCCTTCGACGCCGCCCTCCTCATGCAATGGACCCTCTACTTTCTC
CCTATCTACTTCCAGGGAGTACAGCGCAAGTCCCCGCTAACATCAGGAAT
TGACCTCCTCCCCTGCAGTGCCTTCCTCATCCCCTTCGCCATGGTCGCCG
GCACCATCATGTCCCGCACGGGGCTGTGCCGCCCACTGCACTTCATCGGC
TTCGCGGCCCTCTCTCTCGCGTTAGGCCTCTTCACTCCGCTCTCCGCACA
CTCTCCCCGCGCAGCATGGGTATGTGTCCAGCTCCCCGCTGCACTAGGCC
AGGGCTTCCTAGCCACGACTATCCTCCCTGCTATTCAATCTTCCCTGGGG
CCCAACGATATCGCTAGTTCTACGGGCGTGTATGCGTTCCTGCGCTCGCT
GGCGTTTGTGTGGGGATCTACGGCACCCGGGATTGTGTTTAATGCAAGGG
TGGATGTCTATGCGAGGAGGATTACCACTGATGAGAAGCTGAGGGAGAGG
TTGCTGGACGGGAGGGCATATGGCGCGGCGGCGGAGTTTGCGGGGAGTTG
GGGGGCGGGGCTTGACGTGGTGCAGAGGGAGCAGGTTAGGGAGGTGTATC
GGCTGGCGTTGAGGACGGTGTGGTTTGTGGGGTTGGCGTTTGCGTTGGTG
GGGGTGGTGGTTGGGTTGGGGATGGGGAGAGTGGTTTTACAGGGGGGGTT
GGAGGAGAATGGGTACGGGTTGAAGGAGAAGGGGGATGAAAAGGTTGTGG
ATGGGAGGGAGGGGAGTAACCGGGTGGAAGAGGTGTTTCATGCTGTAGAA
ACGGGGAAGAGGGAAGAAACTGGAGGTAGGGCTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0022857 | transmembrane transporter activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005551-T1.utr5p1 | KJC3_005551-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005551-T1.utr3p1 | KJC3_005551-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | SECRETED:SignalP(1-30) |
| DBxref | InterPro:IPR036259 |
| DBxref | InterPro:IPR020846 |
| DBxref | InterPro:IPR011701 |
| DBxref | PFAM:PF07690 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:3050073..3052081 + |
|
