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KJC3_005564-T1, KJC3_005564-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005564-T1
Unique NameKJC3_005564-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:3079965..3082002-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005564-T1 ID=KJC3_005564-T1|Name=KJC3_005564-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2038bp|location=Sequence derived from alignment at ch4:3079965..3082002- (Aspergillus niger KJC3)
ATCAAGCTCCATCTCACCACCACGCCCTTCATTGCCTTTGCACCTTTCAT
TCAACCTCACCTTATTTATCTCCACGAATACATTTCTCAACTGATTTGTT
ACTCCTTCATCTTACCGTCTTGCCACATATCCTCCCGTCACCATGCCTAG
CGCCACGGGAGAGAACTGGGAGAAGTACAAGAAGAACTTCGCCGATGACG
AAGAGCCAGAGAAGAAGATCACCCCTCTTACAGACGAGTAGGTGATTCCC
GGTGTTTTATCAGCATCGATAGTGGTTGGTTCCCGCATCTGGATGGCTAA
CTGGCCGCAGGGATATCCAAGTATTGAAGACCTACGGTGCCGCTCCCTAC
GCCACGGCATTAAAGAAGCTCGAAAAACAGATCAAGGACAGACAAGCGAG
TGTAAACGAGAAGATTGGCGTCAAGGTATTGAGGTCTGCGATATACGTCA
TACCGGACACGTCTGACTAGCTGCTTAGGAATCCGATACCGGTCTTGCGC
CTCCACACCTTTGGGATGTTGCTGCGGACCGACAGCGCATGGCAGAGGAG
CAACCGCTGCAGGTAGCTCGTTGTACAAAGATCATTTCGGATGAGAAGGA
CTCGGATAAGAGCAAATATGTTATCAACGTTAAGCAGATCGCCAAGTTTG
TCGTCAACCTTGGGGAACGCGTGAGTCCTACGGATATCGAAGAGGGCATG
AGAGTCGGGTATGACCCTGCAGCTTTGCTATGCATCTTCCCATCTAACAG
ATGACAGTGTCGACCGCAATAAATACCAGATTATGCTACCTCTCCCTCCC
AAGATCGACCCCAGCGTGACGATGATGACTGTCGAGGACAAGCCCGATGT
GACGTACGGCGATGTCGGAGGATGCAAGGAACAAATTGAGAAGTTGCGAG
AAGTCGTCGAGATGCCATTGCTATCGCCAGAGCGCTTCGTTAACCTCGGT
ATCGACCCGCCGAAGGGTGCTCTGCTCTACGGACCTCCCGGAACTGGTAA
GACACTTTGCGCTCGAGCCGTGGCCAACCGAACCGACGCTACGTTCATCC
GTGTCATTGGTAGTGAGTTGGTGCAGAAGTATGTTGGTGAGGGTGCTCGG
ATGGTCCGTGAGCTTTTCGAGATGGCCCGAACAAAGAAGGCGTGCATTAT
CTTCTTCGACGAAATCGATGCGGTCGGCGGTGCTCGTTTCGACGACGGAG
CGGGTGGTGACAACGAAGTTCAACGTACCATGTTGGAGTTGATTACGCAG
CTGGATGGTTTCGACGCACGTGGTAACATCAAGGTCATGTTCGCTACCAA
CCGACCGTCGACTTTGGACCCTGCCCTGATGCGTCCTGGTCGTATCGACC
GTAAGATCGAGTTCTCGCTCCCGGATGTCGAGGGCCGTGCCAACATTCTC
CGGATTCACGCCAAGAGCATGTCGGTGGAGCGGGACATTCGGTGGGAGCT
GATTTCGCGTCTGTGCCCGAACGCTACAGGAGCTGAGCTCCGGAGTGTTG
CGACAGAGGCGGGCATGTTTGCTATTCGGGCGCGGCGGAAGGTGGCCACG
GAGAAGGACTTCCTGGCCGCGGTGGACAAGGTGATCAAGGGTAACCTGAA
GTTCAACTCGACGGCGACGTACATGCAGTATAATTAGACGGTATGGGTTG
ATTACATTGCATGGCTGGACGGATGTGTATGATCATACATGACATTGGTG
ATTCAGTCAGTCTACGATGGGATCTATAATATGATTGTGCAGTTATATAT
GACAGTAATGGTCTGCTGGTCGCACGGCATATAAGCTACTAGTACAGAGC
ACTAGTAAGTATAAAGTGCATGGCAACCTACATCATCAGGCAAGTAAGGG
TCGTAGTACGTAGAGTTCCGTTGCATGCACGCCCGGCAACTTCGGGATGA
GGTCAACACAGAGTTTGATAGGGGTTCAATGGCAGCAAAATGTCACCAGA
GAGGCATATTCATCCGGGACAAGACTAATAGAGACACCCTGAGCTGGGAA
GCCGATCAACCCCAGCAATAATAGTCCTCCTCCCCAGG
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Coding sequence (CDS) from alignment at ch4:3079965..3082002-

>KJC3_005564-T1 ID=KJC3_005564-T1|Name=KJC3_005564-T1|organism=Aspergillus niger KJC3|type=CDS|length=5280bp|location=Sequence derived from alignment at ch4:3079965..3082002- (Aspergillus niger KJC3)
TGTCGACCGCAATAAATACCAGATTATGCTACCTCTCCCTCCCAAGATCG
ACCCCAGCGTGACGATGATGACTGTCGAGGACAAGCCCGATGTGACGTAC
GGCGATGTCGGAGGATGCAAGGAACAAATTGAGAAGTTGCGAGAAGTCGT
CGAGATGCCATTGCTATCGCCAGAGCGCTTCGTTAACCTCGGTATCGACC
CGCCGAAGGGTGCTCTGCTCTACGGACCTCCCGGAACTGGTAAGACACTT
TGCGCTCGAGCCGTGGCCAACCGAACCGACGCTACGTTCATCCGTGTCAT
TGGTAGTGAGTTGGTGCAGAAGTATGTTGGTGAGGGTGCTCGGATGGTCC
GTGAGCTTTTCGAGATGGCCCGAACAAAGAAGGCGTGCATTATCTTCTTC
GACGAAATCGATGCGGTCGGCGGTGCTCGTTTCGACGACGGAGCGGGTGG
TGACAACGAAGTTCAACGTACCATGTTGGAGTTGATTACGCAGCTGGATG
GTTTCGACGCACGTGGTAACATCAAGGTCATGTTCGCTACCAACCGACCG
TCGACTTTGGACCCTGCCCTGATGCGTCCTGGTCGTATCGACCGTAAGAT
CGAGTTCTCGCTCCCGGATGTCGAGGGCCGTGCCAACATTCTCCGGATTC
ACGCCAAGAGCATGTCGGTGGAGCGGGACATTCGGTGGGAGCTGATTTCG
CGTCTGTGCCCGAACGCTACAGGAGCTGAGCTCCGGAGTGTTGCGACAGA
GGCGGGCATGTTTGCTATTCGGGCGCGGCGGAAGGTGGCCACGGAGAAGG
ACTTCCTGGCCGCGGTGGACAAGGTGATCAAGGGTAACCTGAAGTTCAAC
TCGACGGCGACGTACATGCAGTATAATTAGGAATCCGATACCGGTCTTGC
GCCTCCACACCTTTGGGATGTTGCTGCGGACCGACAGCGCATGGCAGAGG
AGCAACCGCTGCAGGTAGCTCGTTGTACAAAGATCATTTCGGATGAGAAG
GACTCGGATAAGAGCAAATATGTTATCAACGTTAAGCAGATCGCCAAGTT
TGTCGTCAACCTTGGGGAACGCGTGAGTCCTACGGATATCGAAGAGGGCA
TGAGAGTCGGGGATATCCAAGTATTGAAGACCTACGGTGCCGCTCCCTAC
GCCACGGCATTAAAGAAGCTCGAAAAACAGATCAAGGACAGACAAGCGAG
TGTAAACGAGAAGATTGGCGTCAAGATGCCTAGCGCCACGGGAGAGAACT
GGGAGAAGTACAAGAAGAACTTCGCCGATGACGAAGAGCCAGAGAAGAAG
ATCACCCCTCTTACAGACGATGTCGACCGCAATAAATACCAGATTATGCT
ACCTCTCCCTCCCAAGATCGACCCCAGCGTGACGATGATGACTGTCGAGG
ACAAGCCCGATGTGACGTACGGCGATGTCGGAGGATGCAAGGAACAAATT
GAGAAGTTGCGAGAAGTCGTCGAGATGCCATTGCTATCGCCAGAGCGCTT
CGTTAACCTCGGTATCGACCCGCCGAAGGGTGCTCTGCTCTACGGACCTC
CCGGAACTGGTAAGACACTTTGCGCTCGAGCCGTGGCCAACCGAACCGAC
GCTACGTTCATCCGTGTCATTGGTAGTGAGTTGGTGCAGAAGTATGTTGG
TGAGGGTGCTCGGATGGTCCGTGAGCTTTTCGAGATGGCCCGAACAAAGA
AGGCGTGCATTATCTTCTTCGACGAAATCGATGCGGTCGGCGGTGCTCGT
TTCGACGACGGAGCGGGTGGTGACAACGAAGTTCAACGTACCATGTTGGA
GTTGATTACGCAGCTGGATGGTTTCGACGCACGTGGTAACATCAAGGTCA
TGTTCGCTACCAACCGACCGTCGACTTTGGACCCTGCCCTGATGCGTCCT
GGTCGTATCGACCGTAAGATCGAGTTCTCGCTCCCGGATGTCGAGGGCCG
TGCCAACATTCTCCGGATTCACGCCAAGAGCATGTCGGTGGAGCGGGACA
TTCGGTGGGAGCTGATTTCGCGTCTGTGCCCGAACGCTACAGGAGCTGAG
CTCCGGAGTGTTGCGACAGAGGCGGGCATGTTTGCTATTCGGGCGCGGCG
GAAGGTGGCCACGGAGAAGGACTTCCTGGCCGCGGTGGACAAGGTGATCA
AGGGTAACCTGAAGTTCAACTCGACGGCGACGTACATGCAGTATAATTAG
GAATCCGATACCGGTCTTGCGCCTCCACACCTTTGGGATGTTGCTGCGGA
CCGACAGCGCATGGCAGAGGAGCAACCGCTGCAGGTAGCTCGTTGTACAA
AGATCATTTCGGATGAGAAGGACTCGGATAAGAGCAAATATGTTATCAAC
GTTAAGCAGATCGCCAAGTTTGTCGTCAACCTTGGGGAACGCGTGAGTCC
TACGGATATCGAAGAGGGCATGAGAGTCGGGGATATCCAAGTATTGAAGA
CCTACGGTGCCGCTCCCTACGCCACGGCATTAAAGAAGCTCGAAAAACAG
ATCAAGGACAGACAAGCGAGTGTAAACGAGAAGATTGGCGTCAAGATGCC
TAGCGCCACGGGAGAGAACTGGGAGAAGTACAAGAAGAACTTCGCCGATG
ACGAAGAGCCAGAGAAGAAGATCACCCCTCTTACAGACGATGTCGACCGC
AATAAATACCAGATTATGCTACCTCTCCCTCCCAAGATCGACCCCAGCGT
GACGATGATGACTGTCGAGGACAAGCCCGATGTGACGTACGGCGATGTCG
GAGGATGCAAGGAACAAATTGAGAAGTTGCGAGAAGTCGTCGAGATGCCA
TTGCTATCGCCAGAGCGCTTCGTTAACCTCGGTATCGACCCGCCGAAGGG
TGCTCTGCTCTACGGACCTCCCGGAACTGGTAAGACACTTTGCGCTCGAG
CCGTGGCCAACCGAACCGACGCTACGTTCATCCGTGTCATTGGTAGTGAG
TTGGTGCAGAAGTATGTTGGTGAGGGTGCTCGGATGGTCCGTGAGCTTTT
CGAGATGGCCCGAACAAAGAAGGCGTGCATTATCTTCTTCGACGAAATCG
ATGCGGTCGGCGGTGCTCGTTTCGACGACGGAGCGGGTGGTGACAACGAA
GTTCAACGTACCATGTTGGAGTTGATTACGCAGCTGGATGGTTTCGACGC
ACGTGGTAACATCAAGGTCATGTTCGCTACCAACCGACCGTCGACTTTGG
ACCCTGCCCTGATGCGTCCTGGTCGTATCGACCGTAAGATCGAGTTCTCG
CTCCCGGATGTCGAGGGCCGTGCCAACATTCTCCGGATTCACGCCAAGAG
CATGTCGGTGGAGCGGGACATTCGGTGGGAGCTGATTTCGCGTCTGTGCC
CGAACGCTACAGGAGCTGAGCTCCGGAGTGTTGCGACAGAGGCGGGCATG
TTTGCTATTCGGGCGCGGCGGAAGGTGGCCACGGAGAAGGACTTCCTGGC
CGCGGTGGACAAGGTGATCAAGGGTAACCTGAAGTTCAACTCGACGGCGA
CGTACATGCAGTATAATTAGGAATCCGATACCGGTCTTGCGCCTCCACAC
CTTTGGGATGTTGCTGCGGACCGACAGCGCATGGCAGAGGAGCAACCGCT
GCAGGTAGCTCGTTGTACAAAGATCATTTCGGATGAGAAGGACTCGGATA
AGAGCAAATATGTTATCAACGTTAAGCAGATCGCCAAGTTTGTCGTCAAC
CTTGGGGAACGCGTGAGTCCTACGGATATCGAAGAGGGCATGAGAGTCGG
GGATATCCAAGTATTGAAGACCTACGGTGCCGCTCCCTACGCCACGGCAT
TAAAGAAGCTCGAAAAACAGATCAAGGACAGACAAGCGAGTGTAAACGAG
AAGATTGGCGTCAAGATGCCTAGCGCCACGGGAGAGAACTGGGAGAAGTA
CAAGAAGAACTTCGCCGATGACGAAGAGCCAGAGAAGAAGATCACCCCTC
TTACAGACGATGTCGACCGCAATAAATACCAGATTATGCTACCTCTCCCT
CCCAAGATCGACCCCAGCGTGACGATGATGACTGTCGAGGACAAGCCCGA
TGTGACGTACGGCGATGTCGGAGGATGCAAGGAACAAATTGAGAAGTTGC
GAGAAGTCGTCGAGATGCCATTGCTATCGCCAGAGCGCTTCGTTAACCTC
GGTATCGACCCGCCGAAGGGTGCTCTGCTCTACGGACCTCCCGGAACTGG
TAAGACACTTTGCGCTCGAGCCGTGGCCAACCGAACCGACGCTACGTTCA
TCCGTGTCATTGGTAGTGAGTTGGTGCAGAAGTATGTTGGTGAGGGTGCT
CGGATGGTCCGTGAGCTTTTCGAGATGGCCCGAACAAAGAAGGCGTGCAT
TATCTTCTTCGACGAAATCGATGCGGTCGGCGGTGCTCGTTTCGACGACG
GAGCGGGTGGTGACAACGAAGTTCAACGTACCATGTTGGAGTTGATTACG
CAGCTGGATGGTTTCGACGCACGTGGTAACATCAAGGTCATGTTCGCTAC
CAACCGACCGTCGACTTTGGACCCTGCCCTGATGCGTCCTGGTCGTATCG
ACCGTAAGATCGAGTTCTCGCTCCCGGATGTCGAGGGCCGTGCCAACATT
CTCCGGATTCACGCCAAGAGCATGTCGGTGGAGCGGGACATTCGGTGGGA
GCTGATTTCGCGTCTGTGCCCGAACGCTACAGGAGCTGAGCTCCGGAGTG
TTGCGACAGAGGCGGGCATGTTTGCTATTCGGGCGCGGCGGAAGGTGGCC
ACGGAGAAGGACTTCCTGGCCGCGGTGGACAAGGTGATCAAGGGTAACCT
GAAGTTCAACTCGACGGCGACGTACATGCAGTATAATTAGGAATCCGATA
CCGGTCTTGCGCCTCCACACCTTTGGGATGTTGCTGCGGACCGACAGCGC
ATGGCAGAGGAGCAACCGCTGCAGGTAGCTCGTTGTACAAAGATCATTTC
GGATGAGAAGGACTCGGATAAGAGCAAATATGTTATCAACGTTAAGCAGA
TCGCCAAGTTTGTCGTCAACCTTGGGGAACGCGTGAGTCCTACGGATATC
GAAGAGGGCATGAGAGTCGGGGATATCCAAGTATTGAAGACCTACGGTGC
CGCTCCCTACGCCACGGCATTAAAGAAGCTCGAAAAACAGATCAAGGACA
GACAAGCGAGTGTAAACGAGAAGATTGGCGTCAAGATGCCTAGCGCCACG
GGAGAGAACTGGGAGAAGTACAAGAAGAACTTCGCCGATGACGAAGAGCC
AGAGAAGAAGATCACCCCTCTTACAGACGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0030163protein catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005524ATP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPT1KJC3_005564Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005564-T1KJC3_005564-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005564-T1.cdsKJC3_005564-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005564-T1.utr3p1KJC3_005564-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005564-T1.exon4KJC3_005564-T1.exon4Aspergillus niger KJC3exon
KJC3_005564-T1.exon3KJC3_005564-T1.exon3Aspergillus niger KJC3exon
KJC3_005564-T1.exon2KJC3_005564-T1.exon2Aspergillus niger KJC3exon
KJC3_005564-T1.exon1KJC3_005564-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005564-T1.utr5p1KJC3_005564-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR003960
DBxrefInterPro:IPR005937
DBxrefInterPro:IPR003959
DBxrefInterPro:IPR003593
DBxrefPFAM:PF00004
Product26S proteasome regulatory subunit 7
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:3079965..3082002 -
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