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KJC3_005578-T1, KJC3_005578-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005578-T1
Unique NameKJC3_005578-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:3134059..3135683-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005578-T1 ID=KJC3_005578-T1|Name=KJC3_005578-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1625bp|location=Sequence derived from alignment at ch4:3134059..3135683- (Aspergillus niger KJC3)
CTCTGCTGCGGCTTCTTCTCTCTTCCTACCATCTTCTCAAACTCATCTTC
TTCCGGTTCTCATTCGCTGCATCCTCCCCTGCCGCGAGAACCCTGCAAAT
CCTCCTCTCAGTTAATACGAGAGTTTACAATATCTCAACCTCATCCATCT
CTCCTCTCCTCCATTCCCGGAACGGTGAATCCCACCGGCTCGTGCGACAG
AGTGAGTCCCTCCACCATCTCAACGCATCCCTCCGGTTTTCCCTCCTGGC
GCATACACTTCACTTGTTTGTGGCTTGGTTCTTTTGCATTCCCTGCATCG
CCGGTCAAAGTATATACTTGTCCAGCGAATCTCGCACGTGCACTGTCCCA
CACGTACAACTGTCCCGACTCCACCCCTGCTTGAGTCTGTTCCTGCGTAT
TGTCGCACATACTGTTACTCGCTATCGCAGCACATGTCGCTTGTACCTAC
TATCGTATGAGCATTCTGCTAACCATCACAGGCGCTATAAGCTCTATATA
CATCGATCTATCTCTATCTACCTATTTACTCATATCCACCACCATGTCTA
TGGACGCCAAAGAAATCGAGCTCCGGGCCAAGGCCATGACCAAGGCCGCC
TCTTCCAACGAACCTCCCTCTACCATCATACCACTACTCAAGCAACTGCA
ACAAGGGGTGAAAGCCACCGAAGACCTGCTGCGATCGACCCGTGTCGGTA
TCGCCGTCAACAAACTTAAACAACACAAATCTCCCGAAGTCGCCCGTCTC
GCGAGCGAAATCGTCTCCAAGTGGCGCCACGAAGTGAACAAGCAAAAGGC
CGGGGCTTCCCCCGGCGCTAGCCAACGGTCGAGCAGCTCTCCCCACCCGA
AAACCAACGGCACCCCCTCCGGCGGTGCGACTCCCTCCGATAAGGCCTCG
AAGCTCTCGGTGCCTCCCGACAAGCGTACCTGGAAGGCCGATGGCGTGGA
CACCAACCAGACCGGCAACAGAATTCGCGACAGCTGCATCGGCTTGATGT
ACGATGGGCTGTGTCTCAACTCGGTTGAACCCCCCCGCACAGTCCTGTCC
AAGGCGTCGGCCGTCGAAGCGGCAGCCTTTAGCGACCTCGGACCGGAAAC
GAAGGAACAATACCGCACGAAGATCCGCAGTCTCTACCAGAACCTCAAGA
ACAAATCGAACCCGACACTGCGAGTGCGGGTCCTCAACGGCGACGTGACG
CCAGAACAGTTCGTCCGGATGTCGCACGACGAACTCCGGTCGGCGGAACA
GCAGGAGCGCGACCGCAAGATTCAAAAGGAGAACATGGACAAGGCGATGG
TGGCACAGGCGGAGCGGAGTATCAGTACGAGCTTGCAATGCGGCAAGTGT
GGACAGCGCAAGGTGACATATACGGAAGCGCAGACGCGCAGTGCGGACGA
ACCGATGACATTGTTTTGTACGTGTATGAACTGCGGCAAGTCATGGAAGC
AGTGACCAAACCGCCAAAATCGATTTATTATACTCATTCATGTTTTTACT
CATCCATTCAATTTGTATTTTCCCATGGTGTTGGGTGATAGGCGAGGAGT
TGGTTGTCAGGTTCAATTCAGTTATGTCATGTGTCATAGATCATACGTCA
TTCATCTATACCTTCTTACTTATAC
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Coding sequence (CDS) from alignment at ch4:3134059..3135683-

>KJC3_005578-T1 ID=KJC3_005578-T1|Name=KJC3_005578-T1|organism=Aspergillus niger KJC3|type=CDS|length=912bp|location=Sequence derived from alignment at ch4:3134059..3135683- (Aspergillus niger KJC3)
ATGTCTATGGACGCCAAAGAAATCGAGCTCCGGGCCAAGGCCATGACCAA
GGCCGCCTCTTCCAACGAACCTCCCTCTACCATCATACCACTACTCAAGC
AACTGCAACAAGGGGTGAAAGCCACCGAAGACCTGCTGCGATCGACCCGT
GTCGGTATCGCCGTCAACAAACTTAAACAACACAAATCTCCCGAAGTCGC
CCGTCTCGCGAGCGAAATCGTCTCCAAGTGGCGCCACGAAGTGAACAAGC
AAAAGGCCGGGGCTTCCCCCGGCGCTAGCCAACGGTCGAGCAGCTCTCCC
CACCCGAAAACCAACGGCACCCCCTCCGGCGGTGCGACTCCCTCCGATAA
GGCCTCGAAGCTCTCGGTGCCTCCCGACAAGCGTACCTGGAAGGCCGATG
GCGTGGACACCAACCAGACCGGCAACAGAATTCGCGACAGCTGCATCGGC
TTGATGTACGATGGGCTGTGTCTCAACTCGGTTGAACCCCCCCGCACAGT
CCTGTCCAAGGCGTCGGCCGTCGAAGCGGCAGCCTTTAGCGACCTCGGAC
CGGAAACGAAGGAACAATACCGCACGAAGATCCGCAGTCTCTACCAGAAC
CTCAAGAACAAATCGAACCCGACACTGCGAGTGCGGGTCCTCAACGGCGA
CGTGACGCCAGAACAGTTCGTCCGGATGTCGCACGACGAACTCCGGTCGG
CGGAACAGCAGGAGCGCGACCGCAAGATTCAAAAGGAGAACATGGACAAG
GCGATGGTGGCACAGGCGGAGCGGAGTATCAGTACGAGCTTGCAATGCGG
CAAGTGTGGACAGCGCAAGGTGACATATACGGAAGCGCAGACGCGCAGTG
CGGACGAACCGATGACATTGTTTTGTACGTGTATGAACTGCGGCAAGTCA
TGGAAGCAGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_005578KJC3_005578Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005578-T1KJC3_005578-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005578-T1.cdsKJC3_005578-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005578-T1.utr3p1KJC3_005578-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005578-T1.exon2KJC3_005578-T1.exon2Aspergillus niger KJC3exon
KJC3_005578-T1.exon1KJC3_005578-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005578-T1.utr5p2KJC3_005578-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_005578-T1.utr5p1KJC3_005578-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG092645TJ
DBxrefInterPro:IPR036575
DBxrefInterPro:IPR035100
DBxrefInterPro:IPR006289
DBxrefInterPro:IPR035441
DBxrefInterPro:IPR017923
DBxrefInterPro:IPR003617
DBxrefInterPro:IPR003618
DBxrefInterPro:IPR001222
DBxrefPFAM:PF07500
DBxrefPFAM:PF01096
DBxrefPFAM:PF08711
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:3134059..3135683 -
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