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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:3190453..3192672+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005602-T3 ID=KJC3_005602-T3|Name=KJC3_005602-T3|organism=Aspergillus niger KJC3|type=mRNA|length=2220bp|location=Sequence derived from alignment at ch4:3190453..3192672+ (Aspergillus niger KJC3)
TGAGCATCTCCGCTTGGCGACTCCTGCTGAACCGCCGCCCCACGGCTCCG
CTCCCAAGACCGCAAAAACAATCTGTTCGTTAACGACTAGCAGCCCATGG
AACAGAACTTAATCTCTCCATCGCTCTCCCTGACCTCCTTTTGATCCCAA
CCCATCGTATTTTTCTTCTCTTTCTCTTTCACTTCCTTCCCTTCTCCTCT
CCGATCAACCCGCCCTCTGTCACTGGGCGCCTAACCTTTCAATCTGCCCC
TCGCTGGATTGCGCCCGGCTTCAGTTACGTCAGCTCCGCGGCCATGGCAT
ACAACCAGTCCTACAACCCCGATGCGCTGCCAGCGTGAGTCACAACTGTC
TGGCGGTCAATTAGAAGTAGGGATTAGGGTCGCTAACATGTCATTTATGG
ATACAGTCATGCAGAGCCGGAACAGGTACGGTAGTTTTCCTCGAGCGGTT
CTTTGTCTGCCTGGTTGATTGCCCCGCGCCTCCTAACTCGGTCTATGACA
ATTAGGTAGCGCAAATGCTCGGCGCCATGCAATCCAACAACTCGCACCAC
CAGAAGCAGTCTCGCCCATCTCCTCACCCTCCCTCCAGCGGGGTCCCACC
TCGAGTACCCGTTTCTAGTGCCGGCAGTCCCCATCCTCAACGTTACGGCG
CACCGAGTCAGGCTCCGCACGGTGGACGGTCGCCGGCAAACGTCCCTCCA
GCGAGTCAACAACAACGCCCTCACCCACTCCATCCCTCTCCTCCTCCGCA
AAACTACGGCTTTGGGCCGCCTCCTAGCCAGCCAGTGCGCAATCGTCCGC
CGCCCGCGTCTCGTCCACCCAATTCGCCCAACCATGGCGCACTGGCAGTT
CCCGACGACGACCCGCAACAGCTATTCCCCCTGTTCCGCGCTGCGAACAC
GTCGCATTCGGGCACACTCACGGAGATGGAGCTGGGCTCTGCTCTAGTGA
ACGGAGATTTCACGTCGTTTCACCCGAAGACCGTTAAGATGATGATCCGC
ATGTTTGACCGGAACAACAGCGGAACAATCTCATTTGACGAGTTTGTGGC
ACTGTGGCGCTACCTTGCAGCGTGGCGGGAGCTGTTCGATCGATTCGATC
AAGACCGCAGCGGGCGCATTAGCCTGTACGAGTTTGAGAATGCACTGGTG
GCCTTCGGGTACCGGCTAAGCCAGCCATTTGTGATGGTGCTATTCCGGAC
ATTCGAGAACAAAGGCCGGCAGATGAATAATGGTCCTCCGTACGGGCCAG
CGAAACAGGGCATGAGCTTCGATTTGTTTGTGCAGGCGTGCATTAGTCTG
CGGCGCATGACGGACGTCTTTAAGCGGTATGATGATGATCGCGACGGCTA
TATTACGGTGAGCTTCGAGGAATTCTTGACTGGTGAGTTGGCCCCCGCCC
TCGTTATGCGAAAACAAGCGTGGACAATTAGTTGCTAATGTCCGGCGCAG
AAATCCTCCAACTTCAGGACGGATAGGTTTGATTTGGATGATATGGTGGA
TAGGAAGATGGCTGACCTTCTTCCGGGGGTTTCCTCCCTAATTATATTGT
ACATTATACCCTAATTTTCCGTAGCATCTTTCTTCGCAAGCAACCCGGGG
AATCTACAGCGAACAAGTATGGCATGGGCTATTTTTTCTTTTCTTATGTT
TCCGGTCTCGAGCGAAGCCAGACTGCCCCCTATCGGGCGCAATTGCAATG
CCCGCAGGATGCTTTAGTAAAAACGCAAGTCAAGATGCGGTGTAGACCCA
ATCCCACGATGCTCCATGATGATTGAACAATTGACGGAAAGCATCAATGC
AGATCATCCTCGGGGAGGAAGAAGAGAAGAGGAATTGTGACAGGTCTATT
TGTTTGTTTTTCAGGCATGCAGACCTGCAGACCAGCCAGTGATCGACAAC
TTTCAAAAATGTCCGGGCGTGCCAACGGTGTAACTTGCCCCCAAATTCTC
CCTCCCTGCTGCAGTCGGGAGTTTTCTCCCAACTTTTCAGTGTTGATAGG
CCTTCCATGGATATAGCTTGTCTATCACCCCGTGTCCATGGATTGGAGTG
GCCCGTGGGGTGGCTTTCGGGCTTGCTCACCCACGAGATCGATAGCATTT
TTGCCCGTTTTGGGGATGGCTTCGTCGTTGTTTCAACTTATCTCCGAGCC
TTAAGAGCGGGCAAGCATTGACAGGGAAAATTTTCTCTCCTTGCAAGGAT
TATTTATTAACTGTGCGAGA back to topCoding sequence (CDS) from alignment at ch4:3190453..3192672+ >KJC3_005602-T3 ID=KJC3_005602-T3|Name=KJC3_005602-T3|organism=Aspergillus niger KJC3|type=CDS|length=1788bp|location=Sequence derived from alignment at ch4:3190453..3192672+ (Aspergillus niger KJC3)
ATGCTCGGCGCCATGCAATCCAACAACTCGCACCACCAGAAGCAGTCTCG
CCCATCTCCTCACCCTCCCTCCAGCGGGGTCCCACCTCGAGTACCCGTTT
CTAGTGCCGGCAGTCCCCATCCTCAACGTTACGGCGCACCGAGTCAGGCT
CCGCACGGTGGACGGTCGCCGGCAAACGTCCCTCCAGCGAGTCAACAACA
ACGCCCTCACCCACTCCATCCCTCTCCTCCTCCGCAAAACTACGGCTTTG
GGCCGCCTCCTAGCCAGCCAGTGCGCAATCGTCCGCCGCCCGCGTCTCGT
CCACCCAATTCGCCCAACCATGGCGCACTGGCAGTTCCCGACGACGACCC
GCAACAGCTATTCCCCCTGTTCCGCGCTGCGAACACGTCGCATTCGGGCA
CACTCACGGAGATGGAGCTGGGCTCTGCTCTAGTGAACGGAGATTTCACG
TCGTTTCACCCGAAGACCGTTAAGATGATGATCCGCATGTTTGACCGGAA
CAACAGCGGAACAATCTCATTTGACGAGTTTGTGGCACTGTGGCGCTACC
TTGCAGCGTGGCGGGAGCTGTTCGATCGATTCGATCAAGACCGCAGCGGG
CGCATTAGCCTGTACGAGTTTGAGAATGCACTGGTGGCCTTCGGGTACCG
GCTAAGCCAGCCATTTGTGATGGTGCTATTCCGGACATTCGAGAACAAAG
GCCGGCAGATGAATAATGGTCCTCCGTACGGGCCAGCGAAACAGGGCATG
AGCTTCGATTTGTTTGTGCAGGCGTGCATTAGTCTGCGGCGCATGACGGA
CGTCTTTAAGCGGTATGATGATGATCGCGACGGCTATATTACGGTGAGCT
TCGAGGAATTCTTGACTGAAATCCTCCAACTTCAGGACGGATAGATGCTC
GGCGCCATGCAATCCAACAACTCGCACCACCAGAAGCAGTCTCGCCCATC
TCCTCACCCTCCCTCCAGCGGGGTCCCACCTCGAGTACCCGTTTCTAGTG
CCGGCAGTCCCCATCCTCAACGTTACGGCGCACCGAGTCAGGCTCCGCAC
GGTGGACGGTCGCCGGCAAACGTCCCTCCAGCGAGTCAACAACAACGCCC
TCACCCACTCCATCCCTCTCCTCCTCCGCAAAACTACGGCTTTGGGCCGC
CTCCTAGCCAGCCAGTGCGCAATCGTCCGCCGCCCGCGTCTCGTCCACCC
AATTCGCCCAACCATGGCGCACTGGCAGTTCCCGACGACGACCCGCAACA
GCTATTCCCCCTGTTCCGCGCTGCGAACACGTCGCATTCGGGCACACTCA
CGGAGATGGAGCTGGGCTCTGCTCTAGTGAACGGAGATTTCACGTCGTTT
CACCCGAAGACCGTTAAGATGATGATCCGCATGTTTGACCGGAACAACAG
CGGAACAATCTCATTTGACGAGTTTGTGGCACTGTGGCGCTACCTTGCAG
CGTGGCGGGAGCTGTTCGATCGATTCGATCAAGACCGCAGCGGGCGCATT
AGCCTGTACGAGTTTGAGAATGCACTGGTGGCCTTCGGGTACCGGCTAAG
CCAGCCATTTGTGATGGTGCTATTCCGGACATTCGAGAACAAAGGCCGGC
AGATGAATAATGGTCCTCCGTACGGGCCAGCGAAACAGGGCATGAGCTTC
GATTTGTTTGTGCAGGCGTGCATTAGTCTGCGGCGCATGACGGACGTCTT
TAAGCGGTATGATGATGATCGCGACGGCTATATTACGGTGAGCTTCGAGG
AATTCTTGACTGAAATCCTCCAACTTCAGGACGGATAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005509 | calcium ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005602-T3.utr3p1 | KJC3_005602-T3.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR011992 |
| DBxref | InterPro:IPR018247 |
| DBxref | InterPro:IPR002048 |
| DBxref | PFAM:PF13833 |
| DBxref | PFAM:PF13499 |
| DBxref | PFAM:PF13405 |
| DBxref | PFAM:PF13202 |
| DBxref | PFAM:PF00036 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:3190453..3192672 + |
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