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KJC3_005608-T1, KJC3_005608-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005608-T1
Unique NameKJC3_005608-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:3214163..3215031+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005608-T1 ID=KJC3_005608-T1|Name=KJC3_005608-T1|organism=Aspergillus niger KJC3|type=mRNA|length=869bp|location=Sequence derived from alignment at ch4:3214163..3215031+ (Aspergillus niger KJC3)
ATGCCTTCGGAACAAGGTCACAGACGTGAGTGCCATCATTTTCCGGATAT
CAGACATGTGTGCGCGATGGTTGGAATATGGGGATGCCGGAGGATAGATG
GGAATTTGCGGGCGCAACCTGGGCGAAGTGCTGAATGAAATGCTAACTCG
AGATTTTTGCGAAATATAGTCTATGTCAAGTAAGTTTACCACAAACCGTC
CGCCGTCGAATCCGCGCACATTCCGGATATGAATATCAAAAATATCAAAA
TACATGTCGGGACATCAGAGATACGGGCCAAGCGAAGGAATGCAACGAGA
ACAGACCGGTTAATACGAATTCTTTCTACAGGGGTCGCCACGTGAGCTAC
CAGCGCTCCAAGCGTACCGTCAACCCCAACACCAGGTACTTGCGATCCGC
ACCGATATCGATATAGAGGAACAAGGGAATCTGACACATGGGTTATCTAG
TCTGATCAAGATCGACGGTGTTGAGAGCACCGAGGCCGCAAAGTGAGTAG
CGAACGGGTTCGGAATGGGAATATCAGAACACACAGCTAAGACGACATTT
TTTTACAGCTTCTACCTGGGCAAGAAGGTTGCTTTCGTCTACCGGGCCAA
GCGTGAGGTCCGGGGCTCCAACATCCGGGTCATCTGGGGCAAGGTTACCC
GTCCCCACGGTATGTGATGCTCAGCTCCAATGCGCGATGATTACGATGGA
ATATTTCAATACTATCGGTGATTGTTGGAACCGAGAACGGCGGGAAACTA
ACGATATTTCCTCATGAACAGGTAACTCCGGTGTTGTCCGTGCTCAGTTC
CGCCACAACCTCCCCCCCAAGACCTTCGGTGCTACCGTCCGTGTTATGCT
GTACCCCTCCAACATCTAA
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Coding sequence (CDS) from alignment at ch4:3214163..3215031+

>KJC3_005608-T1 ID=KJC3_005608-T1|Name=KJC3_005608-T1|organism=Aspergillus niger KJC3|type=CDS|length=1980bp|location=Sequence derived from alignment at ch4:3214163..3215031+ (Aspergillus niger KJC3)
ATGCCTTCGGAACAAGGTCACAGACTCTATGTCAAGGGTCGCCACGTGAG
CTACCAGCGCTCCAAGCGTACCGTCAACCCCAACACCAGTCTGATCAAGA
TCGACGGTGTTGAGAGCACCGAGGCCGCAAACTTCTACCTGGGCAAGAAG
GTTGCTTTCGTCTACCGGGCCAAGCGTGAGGTCCGGGGCTCCAACATCCG
GGTCATCTGGGGCAAGGTTACCCGTCCCCACGGTAACTCCGGTGTTGTCC
GTGCTCAGTTCCGCCACAACCTCCCCCCCAAGACCTTCGGTGCTACCGTC
CGTGTTATGCTGTACCCCTCCAACATCTAAATGCCTTCGGAACAAGGTCA
CAGACTCTATGTCAAGGGTCGCCACGTGAGCTACCAGCGCTCCAAGCGTA
CCGTCAACCCCAACACCAGTCTGATCAAGATCGACGGTGTTGAGAGCACC
GAGGCCGCAAACTTCTACCTGGGCAAGAAGGTTGCTTTCGTCTACCGGGC
CAAGCGTGAGGTCCGGGGCTCCAACATCCGGGTCATCTGGGGCAAGGTTA
CCCGTCCCCACGGTAACTCCGGTGTTGTCCGTGCTCAGTTCCGCCACAAC
CTCCCCCCCAAGACCTTCGGTGCTACCGTCCGTGTTATGCTGTACCCCTC
CAACATCTAAATGCCTTCGGAACAAGGTCACAGACTCTATGTCAAGGGTC
GCCACGTGAGCTACCAGCGCTCCAAGCGTACCGTCAACCCCAACACCAGT
CTGATCAAGATCGACGGTGTTGAGAGCACCGAGGCCGCAAACTTCTACCT
GGGCAAGAAGGTTGCTTTCGTCTACCGGGCCAAGCGTGAGGTCCGGGGCT
CCAACATCCGGGTCATCTGGGGCAAGGTTACCCGTCCCCACGGTAACTCC
GGTGTTGTCCGTGCTCAGTTCCGCCACAACCTCCCCCCCAAGACCTTCGG
TGCTACCGTCCGTGTTATGCTGTACCCCTCCAACATCTAAATGCCTTCGG
AACAAGGTCACAGACTCTATGTCAAGGGTCGCCACGTGAGCTACCAGCGC
TCCAAGCGTACCGTCAACCCCAACACCAGTCTGATCAAGATCGACGGTGT
TGAGAGCACCGAGGCCGCAAACTTCTACCTGGGCAAGAAGGTTGCTTTCG
TCTACCGGGCCAAGCGTGAGGTCCGGGGCTCCAACATCCGGGTCATCTGG
GGCAAGGTTACCCGTCCCCACGGTAACTCCGGTGTTGTCCGTGCTCAGTT
CCGCCACAACCTCCCCCCCAAGACCTTCGGTGCTACCGTCCGTGTTATGC
TGTACCCCTCCAACATCTAAATGCCTTCGGAACAAGGTCACAGACTCTAT
GTCAAGGGTCGCCACGTGAGCTACCAGCGCTCCAAGCGTACCGTCAACCC
CAACACCAGTCTGATCAAGATCGACGGTGTTGAGAGCACCGAGGCCGCAA
ACTTCTACCTGGGCAAGAAGGTTGCTTTCGTCTACCGGGCCAAGCGTGAG
GTCCGGGGCTCCAACATCCGGGTCATCTGGGGCAAGGTTACCCGTCCCCA
CGGTAACTCCGGTGTTGTCCGTGCTCAGTTCCGCCACAACCTCCCCCCCA
AGACCTTCGGTGCTACCGTCCGTGTTATGCTGTACCCCTCCAACATCTAA
ATGCCTTCGGAACAAGGTCACAGACTCTATGTCAAGGGTCGCCACGTGAG
CTACCAGCGCTCCAAGCGTACCGTCAACCCCAACACCAGTCTGATCAAGA
TCGACGGTGTTGAGAGCACCGAGGCCGCAAACTTCTACCTGGGCAAGAAG
GTTGCTTTCGTCTACCGGGCCAAGCGTGAGGTCCGGGGCTCCAACATCCG
GGTCATCTGGGGCAAGGTTACCCGTCCCCACGGTAACTCCGGTGTTGTCC
GTGCTCAGTTCCGCCACAACCTCCCCCCCAAGACCTTCGGTGCTACCGTC
CGTGTTATGCTGTACCCCTCCAACATCTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL33BKJC3_005608Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005608-T1KJC3_005608-T1-proteinAspergillus niger KJC3polypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005608-T1.exon1KJC3_005608-T1.exon1Aspergillus niger KJC3exon
KJC3_005608-T1.exon2KJC3_005608-T1.exon2Aspergillus niger KJC3exon
KJC3_005608-T1.exon3KJC3_005608-T1.exon3Aspergillus niger KJC3exon
KJC3_005608-T1.exon4KJC3_005608-T1.exon4Aspergillus niger KJC3exon
KJC3_005608-T1.exon5KJC3_005608-T1.exon5Aspergillus niger KJC3exon
KJC3_005608-T1.exon6KJC3_005608-T1.exon6Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005608-T1.cdsKJC3_005608-T1.cdsAspergillus niger KJC3CDS


Properties
Property NameValue
DBxrefInterPro:IPR009000
DBxrefInterPro:IPR018266
DBxrefInterPro:IPR038661
DBxrefInterPro:IPR001780
DBxrefPFAM:PF01247
Product60S ribosomal protein L33B
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:3214163..3215031 +
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