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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:3245606..3246805- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005624-T1 ID=KJC3_005624-T1|Name=KJC3_005624-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1200bp|location=Sequence derived from alignment at ch4:3245606..3246805- (Aspergillus niger KJC3)
CCCTAACTACTCCATCTTCCCCCCAGCACCTCAACCCCCCGGTCTGCAGT
GGCACCCCTAGACCTTTCCCCCCTCGCTCAATAACCCCCCTGACGCCATC
CATGCCCCCATGACCCTCTATGACCACTCCGGACGTCTATCGAGATGCGG
AATACATCGCTGACGTGTCCGGCATCATCGACCCTTATGGCGGCGCCAGC
GCCAACTCCACCAGCCGCACCGAGCGCCTGAGAAAGGTGCAGACGGCCGC
GAAAGTCGCGTTCATTGACCGACTTCTCCGCGACCTAGATATCCTTATTT
ACTGTGAGCTTTCAGCGTTGTATTATATGGAGTGAGCAGAAATCCACCCC
CCGCCCCCGCAACTCCGCACGAGCGCGGACCCCATAAAGTATAATCTATC
AAGCGATAAGTCACAACTAACAATACATGTTCTTCAGCTGCTCGATAATT
CTCTTCGCCCTCCGCGCCATAATCCAACTCATCTTCTTCACACCCAAAGC
ACCCCCCTTCGACCCTACGAGAAACCAACCCTTCGTCGGCGCTATCCTGG
GTAGTAACCTCTTCTGCATGATCTTTCATAGATTCTTCACTAGACCCGAA
GCCAGCGAATCGACGCGCGGATACCTGCATGGTGGGATCTTGATTGATTT
TATTGGACAGAAAACGCCTATCCCGTTCGCTAGACTTCTTTTCCTGGATT
GCCTCATTTTGTTTCTGGATCTGGTCATGTTGGGGTTGATCGTTGAGCGG
GTAAAGACAGTAGAGGTTACTGCAAGTACGCCGGTTGAGACCACGCCCGA
GGGGGAGGAAGAGCGACAGGATCACGATCTGGAGGAGAGGGGGTTGCGAG
GGAGTGGGCCTTCTACGAGATCGTCGACGCGGACATTGGAGGATGATGAA
GATGGGGAGACGATTGAGTTGGGTGAGATGGAGAGGACGCAGTTGTTGGC
TGATCCGGAGGAGGGAGGGAGGAATGCACAGCACGCCCATCCTATGGATA
CGTTTGTGTCAGGTCAGGCAGTGATCATGGATATGGGATTGGTTGACCTT
GTTCGTGATCAGTGGCGGCACAGCCCTGCGACAGCGCGGCGGACGACACC
GTACGTGCCCTCTGATCAGACCGCGGCGTTCTTGAGAGAGCGGTTTGGCA
TTCGAGTTGGCGCAGATGGGCGCATGGAGCGGATCGGAACGGAGGCGTGA
back to topCoding sequence (CDS) from alignment at ch4:3245606..3246805- >KJC3_005624-T1 ID=KJC3_005624-T1|Name=KJC3_005624-T1|organism=Aspergillus niger KJC3|type=CDS|length=1950bp|location=Sequence derived from alignment at ch4:3245606..3246805- (Aspergillus niger KJC3)
CTGCTCGATAATTCTCTTCGCCCTCCGCGCCATAATCCAACTCATCTTCT
TCACACCCAAAGCACCCCCCTTCGACCCTACGAGAAACCAACCCTTCGTC
GGCGCTATCCTGGGTAGTAACCTCTTCTGCATGATCTTTCATAGATTCTT
CACTAGACCCGAAGCCAGCGAATCGACGCGCGGATACCTGCATGGTGGGA
TCTTGATTGATTTTATTGGACAGAAAACGCCTATCCCGTTCGCTAGACTT
CTTTTCCTGGATTGCCTCATTTTGTTTCTGGATCTGGTCATGTTGGGGTT
GATCGTTGAGCGGGTAAAGACAGTAGAGGTTACTGCAAGTACGCCGGTTG
AGACCACGCCCGAGGGGGAGGAAGAGCGACAGGATCACGATCTGGAGGAG
AGGGGGTTGCGAGGGAGTGGGCCTTCTACGAGATCGTCGACGCGGACATT
GGAGGATGATGAAGATGGGGAGACGATTGAGTTGGGTGAGATGGAGAGGA
CGCAGTTGTTGGCTGATCCGGAGGAGGGAGGGAGGAATGCACAGCACGCC
CATCCTATGGATACGTTTGTGTCAGGTCAGGCAGTGATCATGGATATGGG
ATTGGTTGACCTTGTTCGTGATCAGTGGCGGCACAGCCCTGCGACAGCGC
GGCGGACGACACCGTACGTGCCCTCTGATCAGACCGCGGCGTTCTTGAGA
GAGCGGTTTGGCATTCGAGTTGGCGCAGATGGGCGCATGGAGCGGATCGG
AACGGAGGCGTGAATGACCACTCCGGACGTCTATCGAGATGCGGAATACA
TCGCTGACGTGTCCGGCATCATCGACCCTTATGGCGGCGCCAGCGCCAAC
TCCACCAGCCGCACCGAGCGCCTGAGAAAGGTGCAGACGGCCGCGAAAGT
CGCGTTCATTGACCGACTTCTCCGCGACCTAGATATCCTTATTTACTGTG
AGCTTTCAGCGTTGTATTATATGGACTGCTCGATAATTCTCTTCGCCCTC
CGCGCCATAATCCAACTCATCTTCTTCACACCCAAAGCACCCCCCTTCGA
CCCTACGAGAAACCAACCCTTCGTCGGCGCTATCCTGGGTAGTAACCTCT
TCTGCATGATCTTTCATAGATTCTTCACTAGACCCGAAGCCAGCGAATCG
ACGCGCGGATACCTGCATGGTGGGATCTTGATTGATTTTATTGGACAGAA
AACGCCTATCCCGTTCGCTAGACTTCTTTTCCTGGATTGCCTCATTTTGT
TTCTGGATCTGGTCATGTTGGGGTTGATCGTTGAGCGGGTAAAGACAGTA
GAGGTTACTGCAAGTACGCCGGTTGAGACCACGCCCGAGGGGGAGGAAGA
GCGACAGGATCACGATCTGGAGGAGAGGGGGTTGCGAGGGAGTGGGCCTT
CTACGAGATCGTCGACGCGGACATTGGAGGATGATGAAGATGGGGAGACG
ATTGAGTTGGGTGAGATGGAGAGGACGCAGTTGTTGGCTGATCCGGAGGA
GGGAGGGAGGAATGCACAGCACGCCCATCCTATGGATACGTTTGTGTCAG
GTCAGGCAGTGATCATGGATATGGGATTGGTTGACCTTGTTCGTGATCAG
TGGCGGCACAGCCCTGCGACAGCGCGGCGGACGACACCGTACGTGCCCTC
TGATCAGACCGCGGCGTTCTTGAGAGAGCGGTTTGGCATTCGAGTTGGCG
CAGATGGGCGCATGGAGCGGATCGGAACGGAGGCGTGAATGACCACTCCG
GACGTCTATCGAGATGCGGAATACATCGCTGACGTGTCCGGCATCATCGA
CCCTTATGGCGGCGCCAGCGCCAACTCCACCAGCCGCACCGAGCGCCTGA
GAAAGGTGCAGACGGCCGCGAAAGTCGCGTTCATTGACCGACTTCTCCGC
GACCTAGATATCCTTATTTACTGTGAGCTTTCAGCGTTGTATTATATGGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005624-T1.utr5p1 | KJC3_005624-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR013715 |
| DBxref | PFAM:PF08508 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:3245606..3246805 - |
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