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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:3343983..3348332- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005656-T1 ID=KJC3_005656-T1|Name=KJC3_005656-T1|organism=Aspergillus niger KJC3|type=mRNA|length=4350bp|location=Sequence derived from alignment at ch4:3343983..3348332- (Aspergillus niger KJC3)
CTTACTACTAATCTCTCCGGCAATTCTCTCAACCCCAAACTTTCCCGGAC
GAGAAGTGCAATTCTCAGTACGTAATACCAAGGCCACCTCGGCAGCCAAC
CGATCGGGGATCCAATCAGGCTGACGAGGCTTATCTGGACGAGGAGGTGC
AAGGGCGCAGGAACTTGAGGCGAAAAGTCGCCGGGTGGCCATCCAGCATG
CCTGGCCACCTTTCTGTTACGTGTGGAAAACACCCGCCAGTGTTGATCGA
TCGCTTCATCCGGAGATTCTCTTATTGATCCTGATGACTGTTCCCAATTT
CCTGTCTGGAGGAGACGCTCTTTCTCTTTGGGTGGACTGCTTTTTGGTTT
ACCTCATGCCAATTCCATTACTAGTTATAATCAACTGAATGGACACTGGA
TGAGACGGAGACAGAGAGGGAATGGGAAGGGGAGACAACTGAACCAACTT
TTGTGTCATTGTTCTATACTATATATGTTCCGGACTACCTTCCCTTCCTA
TACAACATCTCTATCTCTATCTATCTATCACTACTACTACTACTATTATT
ATTACTACTTCTTCAGTATCTAATAGGAACTGAAGAAAAAGAATATTACC
ACTACTACCTACACTACTACCAACTACTACGACGGAGTACTACTACTATT
CTCCAGTGCAGATCCATGGCCCTGATATGATCAGTGCTCACAAGCAATCA
GATCCTTCCCTGCTCTCCGTCATCATCCTATTACCGTGACCATAATTTTA
TCATTCCATTCTATTACCTACAGTTTTTTATCAGTTCCTTTCATTTCTGG
AGTATATCTCCAACTCCCCGAATCTGGGCGGCTCCGGTTCCGCTGCTGCT
TTCCACCGCAAGCTTGTACTCCCCGACATTCTCGTCCCCCCATTCGATCA
ATTCCCGTTTCATTCCCTCCCTTACTTACTACTTCCTATCTACTACTACT
TTACTTTACTCTATCTATCAATTCATTCAATCAGTTTCAATCAATCAGCA
TCCATCGGTCTGCTTACGCCCACTCCGGCTGATAAGCTTCTCCCCTGCGG
TTCGTACGTGGCTGGCAGGCAACCCGTCTTCTCTCTCCGTACTTGCTTTG
CTCATTGGTCGGTGCGTTCGATAGACGGGATCACCGCGCGACTTTCTCTC
ACCACCCCGTCAACAAGACTGGGCTGCAGTCAAACCCCAGATATTTCCAA
TCCTAATTTGGTGAGGGGTCTGGTCTCTCTGACTCTCCCTCTTCCTCCTC
CTGCCCTCCTGCCCTCCGTGCTTCCATTGCGGAGCTCGCACGGCGGAGTC
TCCGACGGCCCCGGTTCATTTACGTGACAAGAATCTATCTCCATTGATTG
TTTTGTCGCTATCGCCGCCCAATTTTTTGATTGTTAATTGTTTCTGTGAC
AATTCGTGAGATTTTGGGCCTGCGAGTCTCGCCGCCTATCTACGCATCTC
CGGCTTGTCTCCCCGGTTTGCTCCTGCAGTGGCCACTCTTGAGTTGTCGT
TGCTTATCGCTCCCATCCGGGTTATCTTTCGACCTGTCCATTCAAACCCC
CCTCTGAATGGCTGCCGTTATCACTCTCCAGTCGTCCTCGACGACGGGGC
CAACAGCCCCCTCTGCAGCTGCCTTTCAACAGTCGCCTGCCTCTGACCAC
CACCACCAACTCCTTCGACCCCGGGTCCAGCAGCAATCCCAACCCCAGCC
ATCACACGCACCTCAACCCGGTTCGATATCCACGCCACAGTCGCCGGCCT
CATCCATTGGCACCCTTTCCCGTGTGACTGCGTCAGGCCGGGATGCGCCC
AGTTGCGACGCCTGTGTGCGCAGAAAGAGCCGCTGTGCTATTAACGAAAT
GATCAATAAATGTTATTCGTGCGACTTCCACCGCCAGGACTGCACCTTCA
CCTTGTCCGTGACGAGTCGCCCCGGCACGGCGGATGTCCCGTCGAAAAAA
CGTAAATTGGACGACGCCGATGCCGAAGAAGTGGAATCTCCCAAGAGGTA
TGATTTCACCGGGGCGTCCTAAAGGCCGATCTCGGACGTCCCCTGCCCTG
AATCTCAAATCGGAACGCTAACTTGGGTACCCGCTGCCAGGCAATCTACT
ACTCTTCCCCCAGCCTCCAACAAACCAGACAGCTCCTCCCGCCCTGCATT
GAACAACCACCACATCCTCACGCCGGCCTTTTGGTTCCAATCCACTCAAC
ATATCGGCCTCACCACCGAACTCGAGCCCGCCCTTCTCGAATTCTTGCCC
CTGGACCAGAACAACGAAGGGTGCGTGGCCTCGTCTCGTGTGCGCAAGTT
CGGTGACGACGGCACCTTCATGCGGGTGGTCAACACCCGTTCTCACGCGG
ACTCCCCGCAAACCGCTACGCTCGATGCCATTGAAAGCCTGGTCGCCCCT
TATGGCTCCACCTTGGTGGAGAAGTTCTTCGAGCATGTCCATCCAAGCTT
TCCCATCCTCATGGAGGATAGCTTCCGCCAGTCCTACCGGGCACGGACCG
GGCTGACGCCGTTGCTATTGTCCGCCGTCTATGTGTTGGCGTTGAAGTTC
GTTGACGTCGGCCCGGCCTCGCAGTCCGTCCGACGCCCGGATGCCGGCCG
CCTGGAGAGCACTGCCCTCAAGCTGCTGACCGAGTCGCTGCCCTATGCGT
CGATGTCGACGGTGCAAGCCGGCCTGCTGCTCATGCAGCGGTCCAACCTC
GCCACGGCGGCCTTGAACGCACAATTGGTGACCGCCGGGTTCGAGCTGGG
CCTGCACCAAGACTGCTCTAGTTGGCGGATGGAAACGTGGGAGAAGGGTC
TCCGGAAACGCTTGGCATGGGCACTATATATGCAGGACAAATGGTCCGCT
TTGGTGCATGGTCGTCCGTCCCATATCGTGTCGTCCAATTGGATGGTCCA
GGACCTGGTGGAACAGGATTTCACCGATGCCTTCTCGGGCACATCCGCCC
ACGATGATGCGCCCGTCGGCCATGGGCCATTGTCCTTCTGCCACATGGTG
GCTCTGACGACGATATTGTCCGATATTCTGGATCGATTCTATACTCTCCA
GGCGATCGAAGAATTCAGGACGGCCGGAAACAACCGTACCCGCATGATTT
TGGAGCGCGCCAAGCCGGCTCAGATCCGGCTGAAGGAGTGGTTTGGTCGC
CTACCCACTCAGCTGAAGATGGACTCGGGCGGGGATATCTTCGAGACCGT
CAACGAAGACAATTCACGTAATGGTGCTTTGCACCTGTCCTATTTTGCCA
CAGAGATCACTCTCCACCGCTGTATTGTGCGGTCCCTCTCCCAAGACACC
GCCGACGCCTACCTCTCCCATATCTGTCGGTCTGCCGCCAAGACTCGTCT
AATTTCCGCCATGGACTTTGTCAACCGTCTTCGTCCGATGCATCTGAGAT
CATTCTGGCCGGCCGCCGCGCGGACGAACTTTGCCCTCATCGGATCCTTT
GGCGTCCTGCTTCGCGTCACCGCTCCCACCAAGGAAGAGTCGGAGTTCTA
CCGTCTTCGACTGTGCGAATACCGGTGGACGCTGAGTGTGAGCAAGAAGG
ACGCCGAATTCCTCGAATTCGCACTCGAGAGTCTCGACAGCGCGACCAAC
CTCGATCACTACGTCCCGGAGAAACCCGGTATTGACGAGCTCATGACCAG
TGCCGCCAAACCCACCATTAATGCTTCCCGCTCGGGCGCGAACGCCCAGC
TGGAGGACTCGATGGTCGAGCTGGAACAAACAGGCGAGAGCGGACGCGGG
GGCACCTCCTCCGTTATCTCGGGTTTAGCATCTCCTGCAACCTCGATCAG
TGACGACAGTGTACAAGACGCTTCCATTCCCCCGCTATAGTCTCTATACC
CGCTTCCTCAAAACACCCCCAACCGATATACGGTTGACGCGACACGCGTC
CTTACGTTCGACACAAACAACCATTTGATGCCCTTGATGACCACAACTAC
CGCCTTCGCATCTCTCATTACCGATCTGGCGCATTCTGTGATTATTTCTC
CTACCTCGATGCTTTCCCCCGAGGTTTCCATTTCTTGATACCTTGATATG
TTATATGTTGGCTGCACTCGCTCGGAGTTGTGCGTTGCGCTTGATGATGA
TCGATCACTGTTTTGACTTTCTTACGAACTAATTCCCCACCCGGCTGGAT
GACTGGATGAATGACTGCACTTCCGGCATGCATTGTATGTACATATGGGT
TTGCTCTTGTTCTTTTATTTCTCTTTATACTCATGATGGATCCGGGACTG
GATGGATAGTTATAGACTGGTTTGGCCATGGGATGGATAGATAGCGTGGA
TTTACTTTTTGACTGTCACGGTCATGGTCATAAAATTACATTTGATCTAA
back to topCoding sequence (CDS) from alignment at ch4:3343983..3348332- >KJC3_005656-T1 ID=KJC3_005656-T1|Name=KJC3_005656-T1|organism=Aspergillus niger KJC3|type=CDS|length=4380bp|location=Sequence derived from alignment at ch4:3343983..3348332- (Aspergillus niger KJC3)
GCAATCTACTACTCTTCCCCCAGCCTCCAACAAACCAGACAGCTCCTCCC
GCCCTGCATTGAACAACCACCACATCCTCACGCCGGCCTTTTGGTTCCAA
TCCACTCAACATATCGGCCTCACCACCGAACTCGAGCCCGCCCTTCTCGA
ATTCTTGCCCCTGGACCAGAACAACGAAGGGTGCGTGGCCTCGTCTCGTG
TGCGCAAGTTCGGTGACGACGGCACCTTCATGCGGGTGGTCAACACCCGT
TCTCACGCGGACTCCCCGCAAACCGCTACGCTCGATGCCATTGAAAGCCT
GGTCGCCCCTTATGGCTCCACCTTGGTGGAGAAGTTCTTCGAGCATGTCC
ATCCAAGCTTTCCCATCCTCATGGAGGATAGCTTCCGCCAGTCCTACCGG
GCACGGACCGGGCTGACGCCGTTGCTATTGTCCGCCGTCTATGTGTTGGC
GTTGAAGTTCGTTGACGTCGGCCCGGCCTCGCAGTCCGTCCGACGCCCGG
ATGCCGGCCGCCTGGAGAGCACTGCCCTCAAGCTGCTGACCGAGTCGCTG
CCCTATGCGTCGATGTCGACGGTGCAAGCCGGCCTGCTGCTCATGCAGCG
GTCCAACCTCGCCACGGCGGCCTTGAACGCACAATTGGTGACCGCCGGGT
TCGAGCTGGGCCTGCACCAAGACTGCTCTAGTTGGCGGATGGAAACGTGG
GAGAAGGGTCTCCGGAAACGCTTGGCATGGGCACTATATATGCAGGACAA
ATGGTCCGCTTTGGTGCATGGTCGTCCGTCCCATATCGTGTCGTCCAATT
GGATGGTCCAGGACCTGGTGGAACAGGATTTCACCGATGCCTTCTCGGGC
ACATCCGCCCACGATGATGCGCCCGTCGGCCATGGGCCATTGTCCTTCTG
CCACATGGTGGCTCTGACGACGATATTGTCCGATATTCTGGATCGATTCT
ATACTCTCCAGGCGATCGAAGAATTCAGGACGGCCGGAAACAACCGTACC
CGCATGATTTTGGAGCGCGCCAAGCCGGCTCAGATCCGGCTGAAGGAGTG
GTTTGGTCGCCTACCCACTCAGCTGAAGATGGACTCGGGCGGGGATATCT
TCGAGACCGTCAACGAAGACAATTCACGTAATGGTGCTTTGCACCTGTCC
TATTTTGCCACAGAGATCACTCTCCACCGCTGTATTGTGCGGTCCCTCTC
CCAAGACACCGCCGACGCCTACCTCTCCCATATCTGTCGGTCTGCCGCCA
AGACTCGTCTAATTTCCGCCATGGACTTTGTCAACCGTCTTCGTCCGATG
CATCTGAGATCATTCTGGCCGGCCGCCGCGCGGACGAACTTTGCCCTCAT
CGGATCCTTTGGCGTCCTGCTTCGCGTCACCGCTCCCACCAAGGAAGAGT
CGGAGTTCTACCGTCTTCGACTGTGCGAATACCGGTGGACGCTGAGTGTG
AGCAAGAAGGACGCCGAATTCCTCGAATTCGCACTCGAGAGTCTCGACAG
CGCGACCAACCTCGATCACTACGTCCCGGAGAAACCCGGTATTGACGAGC
TCATGACCAGTGCCGCCAAACCCACCATTAATGCTTCCCGCTCGGGCGCG
AACGCCCAGCTGGAGGACTCGATGGTCGAGCTGGAACAAACAGGCGAGAG
CGGACGCGGGGGCACCTCCTCCGTTATCTCGGGTTTAGCATCTCCTGCAA
CCTCGATCAGTGACGACAGTGTACAAGACGCTTCCATTCCCCCGCTATAG
ATGGCTGCCGTTATCACTCTCCAGTCGTCCTCGACGACGGGGCCAACAGC
CCCCTCTGCAGCTGCCTTTCAACAGTCGCCTGCCTCTGACCACCACCACC
AACTCCTTCGACCCCGGGTCCAGCAGCAATCCCAACCCCAGCCATCACAC
GCACCTCAACCCGGTTCGATATCCACGCCACAGTCGCCGGCCTCATCCAT
TGGCACCCTTTCCCGTGTGACTGCGTCAGGCCGGGATGCGCCCAGTTGCG
ACGCCTGTGTGCGCAGAAAGAGCCGCTGTGCTATTAACGAAATGATCAAT
AAATGTTATTCGTGCGACTTCCACCGCCAGGACTGCACCTTCACCTTGTC
CGTGACGAGTCGCCCCGGCACGGCGGATGTCCCGTCGAAAAAACGTAAAT
TGGACGACGCCGATGCCGAAGAAGTGGAATCTCCCAAGAGGCAATCTACT
ACTCTTCCCCCAGCCTCCAACAAACCAGACAGCTCCTCCCGCCCTGCATT
GAACAACCACCACATCCTCACGCCGGCCTTTTGGTTCCAATCCACTCAAC
ATATCGGCCTCACCACCGAACTCGAGCCCGCCCTTCTCGAATTCTTGCCC
CTGGACCAGAACAACGAAGGGTGCGTGGCCTCGTCTCGTGTGCGCAAGTT
CGGTGACGACGGCACCTTCATGCGGGTGGTCAACACCCGTTCTCACGCGG
ACTCCCCGCAAACCGCTACGCTCGATGCCATTGAAAGCCTGGTCGCCCCT
TATGGCTCCACCTTGGTGGAGAAGTTCTTCGAGCATGTCCATCCAAGCTT
TCCCATCCTCATGGAGGATAGCTTCCGCCAGTCCTACCGGGCACGGACCG
GGCTGACGCCGTTGCTATTGTCCGCCGTCTATGTGTTGGCGTTGAAGTTC
GTTGACGTCGGCCCGGCCTCGCAGTCCGTCCGACGCCCGGATGCCGGCCG
CCTGGAGAGCACTGCCCTCAAGCTGCTGACCGAGTCGCTGCCCTATGCGT
CGATGTCGACGGTGCAAGCCGGCCTGCTGCTCATGCAGCGGTCCAACCTC
GCCACGGCGGCCTTGAACGCACAATTGGTGACCGCCGGGTTCGAGCTGGG
CCTGCACCAAGACTGCTCTAGTTGGCGGATGGAAACGTGGGAGAAGGGTC
TCCGGAAACGCTTGGCATGGGCACTATATATGCAGGACAAATGGTCCGCT
TTGGTGCATGGTCGTCCGTCCCATATCGTGTCGTCCAATTGGATGGTCCA
GGACCTGGTGGAACAGGATTTCACCGATGCCTTCTCGGGCACATCCGCCC
ACGATGATGCGCCCGTCGGCCATGGGCCATTGTCCTTCTGCCACATGGTG
GCTCTGACGACGATATTGTCCGATATTCTGGATCGATTCTATACTCTCCA
GGCGATCGAAGAATTCAGGACGGCCGGAAACAACCGTACCCGCATGATTT
TGGAGCGCGCCAAGCCGGCTCAGATCCGGCTGAAGGAGTGGTTTGGTCGC
CTACCCACTCAGCTGAAGATGGACTCGGGCGGGGATATCTTCGAGACCGT
CAACGAAGACAATTCACGTAATGGTGCTTTGCACCTGTCCTATTTTGCCA
CAGAGATCACTCTCCACCGCTGTATTGTGCGGTCCCTCTCCCAAGACACC
GCCGACGCCTACCTCTCCCATATCTGTCGGTCTGCCGCCAAGACTCGTCT
AATTTCCGCCATGGACTTTGTCAACCGTCTTCGTCCGATGCATCTGAGAT
CATTCTGGCCGGCCGCCGCGCGGACGAACTTTGCCCTCATCGGATCCTTT
GGCGTCCTGCTTCGCGTCACCGCTCCCACCAAGGAAGAGTCGGAGTTCTA
CCGTCTTCGACTGTGCGAATACCGGTGGACGCTGAGTGTGAGCAAGAAGG
ACGCCGAATTCCTCGAATTCGCACTCGAGAGTCTCGACAGCGCGACCAAC
CTCGATCACTACGTCCCGGAGAAACCCGGTATTGACGAGCTCATGACCAG
TGCCGCCAAACCCACCATTAATGCTTCCCGCTCGGGCGCGAACGCCCAGC
TGGAGGACTCGATGGTCGAGCTGGAACAAACAGGCGAGAGCGGACGCGGG
GGCACCTCCTCCGTTATCTCGGGTTTAGCATCTCCTGCAACCTCGATCAG
TGACGACAGTGTACAAGACGCTTCCATTCCCCCGCTATAGATGGCTGCCG
TTATCACTCTCCAGTCGTCCTCGACGACGGGGCCAACAGCCCCCTCTGCA
GCTGCCTTTCAACAGTCGCCTGCCTCTGACCACCACCACCAACTCCTTCG
ACCCCGGGTCCAGCAGCAATCCCAACCCCAGCCATCACACGCACCTCAAC
CCGGTTCGATATCCACGCCACAGTCGCCGGCCTCATCCATTGGCACCCTT
TCCCGTGTGACTGCGTCAGGCCGGGATGCGCCCAGTTGCGACGCCTGTGT
GCGCAGAAAGAGCCGCTGTGCTATTAACGAAATGATCAATAAATGTTATT
CGTGCGACTTCCACCGCCAGGACTGCACCTTCACCTTGTCCGTGACGAGT
CGCCCCGGCACGGCGGATGTCCCGTCGAAAAAACGTAAATTGGACGACGC
CGATGCCGAAGAAGTGGAATCTCCCAAGAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006351 | transcription, DNA-templated |
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005656-T1.utr3p1 | KJC3_005656-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005656-T1.utr5p1 | KJC3_005656-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR007219 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF04082 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:3343983..3348332 - |
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