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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:3502683..3503924- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005714-T1 ID=KJC3_005714-T1|Name=KJC3_005714-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1242bp|location=Sequence derived from alignment at ch4:3502683..3503924- (Aspergillus niger KJC3)
CAGCCGGACACCGGACCCCAGCATTCTACGACCCAAGACTCCGAATTGTA
TCTCCCTGACCTTCTTCTTTATCCCGTGAACTTCAGTCCAGTCACCTCTT
CTTCAGAATTCTCCTAATCTCGCCGACTGCCCATAATGTCTGGATATGAC
CGAGCTCTTTCAGGTAAGACAAGCTAGCTACGACCTTGGCTACGGGCCTG
GTTGCTGAAGGGATTCCCCATTCTAACCTCTTCGCAGTCTTCAGGTATGC
ATCTCTAGCTTCATGAAGCTCTAGCAAACACACCCTAACCCGCCCCCAGC
CCCGATGGGCACGTCTTTCAGGTGGAATACGCCATGGAAGCCGTCAAGCG
AGGTTCGTCCAACCCCTCCTTCCCTCCGACACCAAGGGAATCTCCATCCA
TCGCATCATACTCACTCATTTCCCTTTCAACCTATTAGGAACCTGCGCCG
TCGGAGTAAAAGGCAAGGACGTGGTCGTTCTCGGCTGCGAGAAGCGCTCC
GCACTGAAGCTCCAAGATACCCGCATCACACCGTCCAAGATCGCCATGGT
GGATAACCACGCCGTCCTGGCTTTCGCCGGCCTGAACGCCGACGCCCGCA
TTCTTATCGACAAAGCCCGTCTAGAAGCTCAGTCCCACCGTCTGACCGTC
GAAGACCCCGTCACTATCGAATACATCACGAAGTACATTGCCGGTGTGCA
GCAGCGGTACACGCAGAGTGGTGGTGTTAGACCCTTCGGTATCAGTACCC
TGGTCGTGGGTTTCGACCCCAATGATAAGACGCCGAGGTTATATCAGACT
GAGCCTTCGGGGATTTATTCCGCTTGGTGGGTTTATTCTCCCTCTCTTGT
GTCTTGTGTTGATAGTATGGGGATGGTTTTAAAGCTGACGATGGTCTGGA
TATAGGAAAGCAAATGCCATCGGACGCTCCAGCAAGACTGTGCGCGAGTT
CCTCGAACGCAACCACCAGGAGGATATGGATCGCGAACAGACCATTCAGC
TCACCATCAAGTCGCTGTTGGAGGTGGTGCAGACTGGTGCGAAGAACATC
GAGGTGGCTATCATGTCGCCCGGAAAGTCGATCGAGATGCTCCCGGATGA
CCAGATCGAGTCGTACGTTAAAAGCATAGAGACGGAGAAGCAGGAGGAGG
CGGCTAAGAAGAAGACGGGTCGCGGCGGCACCACGACGGCTGCTATTCTA
ACACGGCCTGGTGGCGGCGAGGGCAGCGAGAGCCGGGAGTAG back to topCoding sequence (CDS) from alignment at ch4:3502683..3503924- >KJC3_005714-T1 ID=KJC3_005714-T1|Name=KJC3_005714-T1|organism=Aspergillus niger KJC3|type=CDS|length=2232bp|location=Sequence derived from alignment at ch4:3502683..3503924- (Aspergillus niger KJC3)
GAAAGCAAATGCCATCGGACGCTCCAGCAAGACTGTGCGCGAGTTCCTCG
AACGCAACCACCAGGAGGATATGGATCGCGAACAGACCATTCAGCTCACC
ATCAAGTCGCTGTTGGAGGTGGTGCAGACTGGTGCGAAGAACATCGAGGT
GGCTATCATGTCGCCCGGAAAGTCGATCGAGATGCTCCCGGATGACCAGA
TCGAGTCGTACGTTAAAAGCATAGAGACGGAGAAGCAGGAGGAGGCGGCT
AAGAAGAAGACGGGTCGCGGCGGCACCACGACGGCTGCTATTCTAACACG
GCCTGGTGGCGGCGAGGGCAGCGAGAGCCGGGAGTAGGAACCTGCGCCGT
CGGAGTAAAAGGCAAGGACGTGGTCGTTCTCGGCTGCGAGAAGCGCTCCG
CACTGAAGCTCCAAGATACCCGCATCACACCGTCCAAGATCGCCATGGTG
GATAACCACGCCGTCCTGGCTTTCGCCGGCCTGAACGCCGACGCCCGCAT
TCTTATCGACAAAGCCCGTCTAGAAGCTCAGTCCCACCGTCTGACCGTCG
AAGACCCCGTCACTATCGAATACATCACGAAGTACATTGCCGGTGTGCAG
CAGCGGTACACGCAGAGTGGTGGTGTTAGACCCTTCGGTATCAGTACCCT
GGTCGTGGGTTTCGACCCCAATGATAAGACGCCGAGGTTATATCAGACTG
AGCCTTCGGGGATTTATTCCGCTTGATGGAAGCCGTCAAGCGAGGAAAGC
AAATGCCATCGGACGCTCCAGCAAGACTGTGCGCGAGTTCCTCGAACGCA
ACCACCAGGAGGATATGGATCGCGAACAGACCATTCAGCTCACCATCAAG
TCGCTGTTGGAGGTGGTGCAGACTGGTGCGAAGAACATCGAGGTGGCTAT
CATGTCGCCCGGAAAGTCGATCGAGATGCTCCCGGATGACCAGATCGAGT
CGTACGTTAAAAGCATAGAGACGGAGAAGCAGGAGGAGGCGGCTAAGAAG
AAGACGGGTCGCGGCGGCACCACGACGGCTGCTATTCTAACACGGCCTGG
TGGCGGCGAGGGCAGCGAGAGCCGGGAGTAGGAACCTGCGCCGTCGGAGT
AAAAGGCAAGGACGTGGTCGTTCTCGGCTGCGAGAAGCGCTCCGCACTGA
AGCTCCAAGATACCCGCATCACACCGTCCAAGATCGCCATGGTGGATAAC
CACGCCGTCCTGGCTTTCGCCGGCCTGAACGCCGACGCCCGCATTCTTAT
CGACAAAGCCCGTCTAGAAGCTCAGTCCCACCGTCTGACCGTCGAAGACC
CCGTCACTATCGAATACATCACGAAGTACATTGCCGGTGTGCAGCAGCGG
TACACGCAGAGTGGTGGTGTTAGACCCTTCGGTATCAGTACCCTGGTCGT
GGGTTTCGACCCCAATGATAAGACGCCGAGGTTATATCAGACTGAGCCTT
CGGGGATTTATTCCGCTTGATGGAAGCCGTCAAGCGAGGAAAGCAAATGC
CATCGGACGCTCCAGCAAGACTGTGCGCGAGTTCCTCGAACGCAACCACC
AGGAGGATATGGATCGCGAACAGACCATTCAGCTCACCATCAAGTCGCTG
TTGGAGGTGGTGCAGACTGGTGCGAAGAACATCGAGGTGGCTATCATGTC
GCCCGGAAAGTCGATCGAGATGCTCCCGGATGACCAGATCGAGTCGTACG
TTAAAAGCATAGAGACGGAGAAGCAGGAGGAGGCGGCTAAGAAGAAGACG
GGTCGCGGCGGCACCACGACGGCTGCTATTCTAACACGGCCTGGTGGCGG
CGAGGGCAGCGAGAGCCGGGAGTAGGAACCTGCGCCGTCGGAGTAAAAGG
CAAGGACGTGGTCGTTCTCGGCTGCGAGAAGCGCTCCGCACTGAAGCTCC
AAGATACCCGCATCACACCGTCCAAGATCGCCATGGTGGATAACCACGCC
GTCCTGGCTTTCGCCGGCCTGAACGCCGACGCCCGCATTCTTATCGACAA
AGCCCGTCTAGAAGCTCAGTCCCACCGTCTGACCGTCGAAGACCCCGTCA
CTATCGAATACATCACGAAGTACATTGCCGGTGTGCAGCAGCGGTACACG
CAGAGTGGTGGTGTTAGACCCTTCGGTATCAGTACCCTGGTCGTGGGTTT
CGACCCCAATGATAAGACGCCGAGGTTATATCAGACTGAGCCTTCGGGGA
TTTATTCCGCTTGATGGAAGCCGTCAAGCGAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005839 | proteasome core complex |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004298 | threonine-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0051603 | proteolysis involved in cellular protein catabolic process |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | MEROPS:MER0004372 |
| DBxref | InterPro:IPR023332 |
| DBxref | InterPro:IPR029055 |
| DBxref | InterPro:IPR001353 |
| DBxref | PFAM:PF00227 |
| Product | Proteasome subunit alpha type-4 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:3502683..3503924 - |
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