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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:3876972..3879410- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005832-T1 ID=KJC3_005832-T1|Name=KJC3_005832-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2439bp|location=Sequence derived from alignment at ch4:3876972..3879410- (Aspergillus niger KJC3)
AAAATATTCCCAGCGGATTTCAGTCCATCCCGTCCAGCACGCCAATTCCC
TCCCACCCCCCGGCCTTTTCTTTTCCCTTCTCACCTCTAGCTGTTCCTCT
ATCTTTTTTATTGCAGCTAGAAGTCGAGGCCGTGCACCATGACGCTCTTT
ATCCTTACGGAAACCAGCGCGGGCTATGCCCTGCTCAAGGCCAAGGACAA
GAAGCTGTTGAAGAGAGATGATCTGGCTACTGAGGCTTCCACCGCAGAGG
GTGTTTCTAACCTGTAAGTGCATTCTCATGCATTGTTTACTCTATTCACC
CCCGATTGTCCGTCATCTGCGCGTGGTGTCTCAAAAGCAAAAATTTTCCC
CCACCGCGTCTGTACTTCGGCTAACCGCCGCAATTGTAGTCTGAAGTTGA
AGAGCTTCCAGAAGTTCGACAGCGCTGCTACCGCCCTGGAGGAGGTCGCT
TCCCTCGTCGAAGGAAAGGTTACTCCTCGCCTGGCCAGCCTTTTGGACGA
AGTCAAGGATGAGAAGAAGGTCTCTCTGGCTGTCGCCGACCCCAAGCTCG
GTATGTGGCGCAAAGTTGTGTGGAAACTGAGGGTAAATTTTTCGTATGAC
TGACTGGAATTGGTGTAGGCAATGCTATTGGCAAGCTCCCTGGCCTCTCC
ATCGAGCTGGTGGCCGACTCTTCCACGACCGACGTCTTCCGTGCCATTCG
TGAACACCTGCCCACTCTTATTCCCGGTCTTCTTCCTCAGGACATGTCCA
CCATGTCCCTTGGTCTGTCGCACTCTCTCGCTAGACACAAGCTCAAGTTC
TCCCCCGACAAGATCGACACTATGATTGTGCAGGCCATTGGTCTGCTTGA
CGACTTGGACAAGGAGCTCAACAACTACGCCATGCGTGTGAAGGAATGGT
ATGGCTGGCACTTCCCTGAGCTGGCGAAGATCTTGAACGACAACATCGCC
TACGCCAGACTCGTCCTCAAGATGGGCATGCGCACCAACTGGGAGTCTTC
GGACCTCGCTGAGATTCTCCCCGAGGAGATTGAGGGTGCCGTCAAGGCTG
CTGCGGACCGCTCCATGGGTACCGAGATCAGCCAGGAGGATCTGGAACAC
ATTCAAGCTTTGGCCGAGCAGGTTGTTGGCTTCGCTGAATACCGTCAACA
ACTGGCTGGCTACCTTACCGCCCGTATGAACGCCATCGCCCCCAACCTGA
CTGCCCTTGTCGGTGATCTGGTCGGTGCTCGTCTTATCGCCCACGCTGGT
AGCTTGACCAACCTGTCCAAGAGCCCCGCCAGTACTCTCCAGATCCTGGG
TGCCGAGAAGGCCCTGTTCCGTGCTCTCAAGACCAAGCACGATACCCCCA
AGTACGGTCTGATCTACCACGCTTCCCTGATCGGCCAGGCCACCGGCAAG
AACAAGGGTAAGATGGCCAGAGTTCTCGCTGCCAAGGCTTCCCTTGGTCT
GCGTGTGGATGCCCTCGCTGAGTGGGACGATGATGCCACCGAGGAGGACA
AGGCTGCTCTCGGTACGGAAGCTCGCTACAACCTCGAGCGCAAGCTGGCC
GCCATGGAGGGCAAGCCCCTCAAGCCTCGTGGTGTTGCCATTGCCCCCAA
CGGCGCTCCTCAGGCCCAGAAGTTCGAAATCAACGAAGCCCGCAAATACA
ACGCCGATGCTGATGCTGTTACGGGTGACGAGCCCGCTTCCGCTAAGAAG
AGCAAGAGCAAGAAGCTCGTAGAGGAGGTTCAGGACGAGGAGATGGCCGA
TGCCGCCGACTCCGACGAGGAGTCTGACTCGTCCGACGAGGAGACCGACA
AGAAGTCCAAGAAGAGCAAGGACTCTGAGCTCGAGAAGTTGGCCGAGAAG
GCCGGTCTGAGCCTCAAGCGGTACAAGCGCAAGCTTGAGCGTGGAGAAAT
CCAGTTCGACGCTGAGGGCAACCCCAGCGCAGTCAGCAAGAAGGACATCA
AGAAGGCCAAGAAGGAGGCTAAGAAGTCGGCCAAGGGTGAGGAGAAGAAG
CGCAAGCGGACAGACGACGGCGAAGTCGACAACTCCGAGAAGAAAAAGAA
GAAGAAGAAGAAGGGCGAGGAGTAAATTCGAATGAAGTCCTCAAACAAAA
AGTTTCACAATCACACCTGATGGGAATGCTTCAAATTTCTGTATGATATC
ACACCATGTGGGCCGAATTTCTTCTTTTTCCTTTTCTCTCTCTGTTGCTA
TTTACTTGAAGATTATATGTTTGGGTGGCATTTGATGGATGGATCTTACT
ATCATCCCCTGGCGCAGAGGTGCTTGTTGGTATAAGGCAGTTCAGTTCCA
GAAATAATGTTCTTTCTGAGTTGGATTTTCCAATGGTAGTAATGTTTCCT
TAGCTGTTTGGCTGTAGTTGTAATGGTTGATAGATGCTATCTAGACCGGT
CTTTATGCAGCTGGACTTGTACTGATAAATAACCATGGC back to topCoding sequence (CDS) from alignment at ch4:3876972..3879410- >KJC3_005832-T1 ID=KJC3_005832-T1|Name=KJC3_005832-T1|organism=Aspergillus niger KJC3|type=CDS|length=5229bp|location=Sequence derived from alignment at ch4:3876972..3879410- (Aspergillus niger KJC3)
GCAATGCTATTGGCAAGCTCCCTGGCCTCTCCATCGAGCTGGTGGCCGAC
TCTTCCACGACCGACGTCTTCCGTGCCATTCGTGAACACCTGCCCACTCT
TATTCCCGGTCTTCTTCCTCAGGACATGTCCACCATGTCCCTTGGTCTGT
CGCACTCTCTCGCTAGACACAAGCTCAAGTTCTCCCCCGACAAGATCGAC
ACTATGATTGTGCAGGCCATTGGTCTGCTTGACGACTTGGACAAGGAGCT
CAACAACTACGCCATGCGTGTGAAGGAATGGTATGGCTGGCACTTCCCTG
AGCTGGCGAAGATCTTGAACGACAACATCGCCTACGCCAGACTCGTCCTC
AAGATGGGCATGCGCACCAACTGGGAGTCTTCGGACCTCGCTGAGATTCT
CCCCGAGGAGATTGAGGGTGCCGTCAAGGCTGCTGCGGACCGCTCCATGG
GTACCGAGATCAGCCAGGAGGATCTGGAACACATTCAAGCTTTGGCCGAG
CAGGTTGTTGGCTTCGCTGAATACCGTCAACAACTGGCTGGCTACCTTAC
CGCCCGTATGAACGCCATCGCCCCCAACCTGACTGCCCTTGTCGGTGATC
TGGTCGGTGCTCGTCTTATCGCCCACGCTGGTAGCTTGACCAACCTGTCC
AAGAGCCCCGCCAGTACTCTCCAGATCCTGGGTGCCGAGAAGGCCCTGTT
CCGTGCTCTCAAGACCAAGCACGATACCCCCAAGTACGGTCTGATCTACC
ACGCTTCCCTGATCGGCCAGGCCACCGGCAAGAACAAGGGTAAGATGGCC
AGAGTTCTCGCTGCCAAGGCTTCCCTTGGTCTGCGTGTGGATGCCCTCGC
TGAGTGGGACGATGATGCCACCGAGGAGGACAAGGCTGCTCTCGGTACGG
AAGCTCGCTACAACCTCGAGCGCAAGCTGGCCGCCATGGAGGGCAAGCCC
CTCAAGCCTCGTGGTGTTGCCATTGCCCCCAACGGCGCTCCTCAGGCCCA
GAAGTTCGAAATCAACGAAGCCCGCAAATACAACGCCGATGCTGATGCTG
TTACGGGTGACGAGCCCGCTTCCGCTAAGAAGAGCAAGAGCAAGAAGCTC
GTAGAGGAGGTTCAGGACGAGGAGATGGCCGATGCCGCCGACTCCGACGA
GGAGTCTGACTCGTCCGACGAGGAGACCGACAAGAAGTCCAAGAAGAGCA
AGGACTCTGAGCTCGAGAAGTTGGCCGAGAAGGCCGGTCTGAGCCTCAAG
CGGTACAAGCGCAAGCTTGAGCGTGGAGAAATCCAGTTCGACGCTGAGGG
CAACCCCAGCGCAGTCAGCAAGAAGGACATCAAGAAGGCCAAGAAGGAGG
CTAAGAAGTCGGCCAAGGGTGAGGAGAAGAAGCGCAAGCGGACAGACGAC
GGCGAAGTCGACAACTCCGAGAAGAAAAAGAAGAAGAAGAAGAAGGGCGA
GGAGTAATCTGAAGTTGAAGAGCTTCCAGAAGTTCGACAGCGCTGCTACC
GCCCTGGAGGAGGTCGCTTCCCTCGTCGAAGGAAAGGTTACTCCTCGCCT
GGCCAGCCTTTTGGACGAAGTCAAGGATGAGAAGAAGGTCTCTCTGGCTG
TCGCCGACCCCAAGCTCGATGACGCTCTTTATCCTTACGGAAACCAGCGC
GGGCTATGCCCTGCTCAAGGCCAAGGACAAGAAGCTGTTGAAGAGAGATG
ATCTGGCTACTGAGGCTTCCACCGCAGAGGGTGTTTCTAACCTGCAATGC
TATTGGCAAGCTCCCTGGCCTCTCCATCGAGCTGGTGGCCGACTCTTCCA
CGACCGACGTCTTCCGTGCCATTCGTGAACACCTGCCCACTCTTATTCCC
GGTCTTCTTCCTCAGGACATGTCCACCATGTCCCTTGGTCTGTCGCACTC
TCTCGCTAGACACAAGCTCAAGTTCTCCCCCGACAAGATCGACACTATGA
TTGTGCAGGCCATTGGTCTGCTTGACGACTTGGACAAGGAGCTCAACAAC
TACGCCATGCGTGTGAAGGAATGGTATGGCTGGCACTTCCCTGAGCTGGC
GAAGATCTTGAACGACAACATCGCCTACGCCAGACTCGTCCTCAAGATGG
GCATGCGCACCAACTGGGAGTCTTCGGACCTCGCTGAGATTCTCCCCGAG
GAGATTGAGGGTGCCGTCAAGGCTGCTGCGGACCGCTCCATGGGTACCGA
GATCAGCCAGGAGGATCTGGAACACATTCAAGCTTTGGCCGAGCAGGTTG
TTGGCTTCGCTGAATACCGTCAACAACTGGCTGGCTACCTTACCGCCCGT
ATGAACGCCATCGCCCCCAACCTGACTGCCCTTGTCGGTGATCTGGTCGG
TGCTCGTCTTATCGCCCACGCTGGTAGCTTGACCAACCTGTCCAAGAGCC
CCGCCAGTACTCTCCAGATCCTGGGTGCCGAGAAGGCCCTGTTCCGTGCT
CTCAAGACCAAGCACGATACCCCCAAGTACGGTCTGATCTACCACGCTTC
CCTGATCGGCCAGGCCACCGGCAAGAACAAGGGTAAGATGGCCAGAGTTC
TCGCTGCCAAGGCTTCCCTTGGTCTGCGTGTGGATGCCCTCGCTGAGTGG
GACGATGATGCCACCGAGGAGGACAAGGCTGCTCTCGGTACGGAAGCTCG
CTACAACCTCGAGCGCAAGCTGGCCGCCATGGAGGGCAAGCCCCTCAAGC
CTCGTGGTGTTGCCATTGCCCCCAACGGCGCTCCTCAGGCCCAGAAGTTC
GAAATCAACGAAGCCCGCAAATACAACGCCGATGCTGATGCTGTTACGGG
TGACGAGCCCGCTTCCGCTAAGAAGAGCAAGAGCAAGAAGCTCGTAGAGG
AGGTTCAGGACGAGGAGATGGCCGATGCCGCCGACTCCGACGAGGAGTCT
GACTCGTCCGACGAGGAGACCGACAAGAAGTCCAAGAAGAGCAAGGACTC
TGAGCTCGAGAAGTTGGCCGAGAAGGCCGGTCTGAGCCTCAAGCGGTACA
AGCGCAAGCTTGAGCGTGGAGAAATCCAGTTCGACGCTGAGGGCAACCCC
AGCGCAGTCAGCAAGAAGGACATCAAGAAGGCCAAGAAGGAGGCTAAGAA
GTCGGCCAAGGGTGAGGAGAAGAAGCGCAAGCGGACAGACGACGGCGAAG
TCGACAACTCCGAGAAGAAAAAGAAGAAGAAGAAGAAGGGCGAGGAGTAA
TCTGAAGTTGAAGAGCTTCCAGAAGTTCGACAGCGCTGCTACCGCCCTGG
AGGAGGTCGCTTCCCTCGTCGAAGGAAAGGTTACTCCTCGCCTGGCCAGC
CTTTTGGACGAAGTCAAGGATGAGAAGAAGGTCTCTCTGGCTGTCGCCGA
CCCCAAGCTCGATGACGCTCTTTATCCTTACGGAAACCAGCGCGGGCTAT
GCCCTGCTCAAGGCCAAGGACAAGAAGCTGTTGAAGAGAGATGATCTGGC
TACTGAGGCTTCCACCGCAGAGGGTGTTTCTAACCTGCAATGCTATTGGC
AAGCTCCCTGGCCTCTCCATCGAGCTGGTGGCCGACTCTTCCACGACCGA
CGTCTTCCGTGCCATTCGTGAACACCTGCCCACTCTTATTCCCGGTCTTC
TTCCTCAGGACATGTCCACCATGTCCCTTGGTCTGTCGCACTCTCTCGCT
AGACACAAGCTCAAGTTCTCCCCCGACAAGATCGACACTATGATTGTGCA
GGCCATTGGTCTGCTTGACGACTTGGACAAGGAGCTCAACAACTACGCCA
TGCGTGTGAAGGAATGGTATGGCTGGCACTTCCCTGAGCTGGCGAAGATC
TTGAACGACAACATCGCCTACGCCAGACTCGTCCTCAAGATGGGCATGCG
CACCAACTGGGAGTCTTCGGACCTCGCTGAGATTCTCCCCGAGGAGATTG
AGGGTGCCGTCAAGGCTGCTGCGGACCGCTCCATGGGTACCGAGATCAGC
CAGGAGGATCTGGAACACATTCAAGCTTTGGCCGAGCAGGTTGTTGGCTT
CGCTGAATACCGTCAACAACTGGCTGGCTACCTTACCGCCCGTATGAACG
CCATCGCCCCCAACCTGACTGCCCTTGTCGGTGATCTGGTCGGTGCTCGT
CTTATCGCCCACGCTGGTAGCTTGACCAACCTGTCCAAGAGCCCCGCCAG
TACTCTCCAGATCCTGGGTGCCGAGAAGGCCCTGTTCCGTGCTCTCAAGA
CCAAGCACGATACCCCCAAGTACGGTCTGATCTACCACGCTTCCCTGATC
GGCCAGGCCACCGGCAAGAACAAGGGTAAGATGGCCAGAGTTCTCGCTGC
CAAGGCTTCCCTTGGTCTGCGTGTGGATGCCCTCGCTGAGTGGGACGATG
ATGCCACCGAGGAGGACAAGGCTGCTCTCGGTACGGAAGCTCGCTACAAC
CTCGAGCGCAAGCTGGCCGCCATGGAGGGCAAGCCCCTCAAGCCTCGTGG
TGTTGCCATTGCCCCCAACGGCGCTCCTCAGGCCCAGAAGTTCGAAATCA
ACGAAGCCCGCAAATACAACGCCGATGCTGATGCTGTTACGGGTGACGAG
CCCGCTTCCGCTAAGAAGAGCAAGAGCAAGAAGCTCGTAGAGGAGGTTCA
GGACGAGGAGATGGCCGATGCCGCCGACTCCGACGAGGAGTCTGACTCGT
CCGACGAGGAGACCGACAAGAAGTCCAAGAAGAGCAAGGACTCTGAGCTC
GAGAAGTTGGCCGAGAAGGCCGGTCTGAGCCTCAAGCGGTACAAGCGCAA
GCTTGAGCGTGGAGAAATCCAGTTCGACGCTGAGGGCAACCCCAGCGCAG
TCAGCAAGAAGGACATCAAGAAGGCCAAGAAGGAGGCTAAGAAGTCGGCC
AAGGGTGAGGAGAAGAAGCGCAAGCGGACAGACGACGGCGAAGTCGACAA
CTCCGAGAAGAAAAAGAAGAAGAAGAAGAAGGGCGAGGAGTAATCTGAAG
TTGAAGAGCTTCCAGAAGTTCGACAGCGCTGCTACCGCCCTGGAGGAGGT
CGCTTCCCTCGTCGAAGGAAAGGTTACTCCTCGCCTGGCCAGCCTTTTGG
ACGAAGTCAAGGATGAGAAGAAGGTCTCTCTGGCTGTCGCCGACCCCAAG
CTCGATGACGCTCTTTATCCTTACGGAAACCAGCGCGGGCTATGCCCTGC
TCAAGGCCAAGGACAAGAAGCTGTTGAAGAGAGATGATCTGGCTACTGAG
GCTTCCACCGCAGAGGGTGTTTCTAACCT back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005832-T1.utr3p1 | KJC3_005832-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005832-T1.utr5p1 | KJC3_005832-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036070 |
| DBxref | InterPro:IPR042239 |
| DBxref | InterPro:IPR002687 |
| DBxref | InterPro:IPR029012 |
| DBxref | InterPro:IPR012974 |
| DBxref | InterPro:IPR012976 |
| DBxref | PFAM:PF08156 |
| DBxref | PFAM:PF01798 |
| Product | Nucleolar protein 58 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:3876972..3879410 - |
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