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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:3887865..3889217+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005837-T1 ID=KJC3_005837-T1|Name=KJC3_005837-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1353bp|location=Sequence derived from alignment at ch4:3887865..3889217+ (Aspergillus niger KJC3)
GTCAGTTGTATAAAATTATAAATAATTTCACATTTCATCTAAGACATCTC
TTTCAGGAGAAGGTCAGGGGGATCCCAATTGGAAAGGCTAGAGCTCAAGG
TTGCGGTCTGGTTCCGCTTTATATCCGCACGTTATCGTGAACATTGCAGC
AGCTAGTCGGTGCAGCAGTGCATCGAACATCGAACCCTGCTTTCATGCCA
TTAAGCACATGACAATACTTTAAATGTGTCTGGAAAAACGCCAATATATA
TCACTTGGTCAGATATAAAGTCCAGACAGTACCAGAAATCCGCGTCCAAT
GGCGGGAAACCACCTTGCGCAAGATGAACAGATAGTGACCATTCTGCTCC
TCGGAGACCCAGGATGTGGAAAAACGACATTCCTATCGTAAGTGCAACAG
CTCTTAAGCACGTATTGCCTTATATGACATATTCCGTATCACGTAACTAG
TGTTATTCATTAACAACCAACTAGGAGCTTGAAATCCAATCTTCGTAGAT
ACCAAGGTAAGGGACACAGTCAAGGGAATCTTGATCGAGAAACCCTCCTA
CGAGACAGTGATCAGCCATTTATCTACGAGATCCGTTTCTCCAAAAGGTC
ATTCACACTTGAAGTATATGACACCGCGAGTCCCAACCAACATTGGTCTA
CCTTGCAGCCCGACGTTATACTTCTGGCATTTGATATTTCGAACAGAGAT
ACCTTGAACAATCTTCGAAATGTAGGACATGTTCCTCTGTTGTGGCGGCT
GTGAATACTGACTTCCATGCCATAGTGGCGAAATGATATCACCAGATACT
TCCAGAATGGATATGGCGAACGCATTCCCATTATGTTGATTGGGTTGAAG
AGAGACCTGAGGGTGGAAGGTGATGGTATCATATATCCTCAAGAGGTGAG
TAGACCATTTCTATGACCATGGAAAGTCTATCTGTGGCACACGCAGGCTT
AGAGCTAACTGATATTATATAAAGTCGTATCGGATTGCGCAGGAACTTCG
ATGTGATCGGTATGCGGAGTGCTCTGCTGTCACTGAGGAACTCTTACCAG
AGACGTTTGAAGATATTGCCCGGCTTGCTGGAATGACGACCACGGCGGCT
GGGGGCCAGACTGCTGGAGCTTGTGTTATTCTTTAGTAAATGTGATACCC
TCATTCCAGCTAACAATGGAAGTAATTTAGACATGCGATATGTTCATTAA
ATTTGTTAGCTATATATTAATCGTGCATCATGCCTGATGATGGCTGCCAA
AAACTTCCGAGTGATACGTGACGGCACTAGCACCATTAATATGATCATGG
GCGTCTACTTTGTTCTTTATGACCTACGTCTACTGTCGACTACTACTAGA
GAC back to topCoding sequence (CDS) from alignment at ch4:3887865..3889217+ >KJC3_005837-T1 ID=KJC3_005837-T1|Name=KJC3_005837-T1|organism=Aspergillus niger KJC3|type=CDS|length=2472bp|location=Sequence derived from alignment at ch4:3887865..3889217+ (Aspergillus niger KJC3)
ATGGCGGGAAACCACCTTGCGCAAGATGAACAGATAGTGACCATTCTGCT
CCTCGGAGACCCAGGATGTGGAAAAACGACATTCCTATCGAGCTTGAAAT
CCAATCTTCGTAGATACCAAGGTAAGGGACACAGTCAAGGGAATCTTGAT
CGAGAAACCCTCCTACGAGACAGTGATCAGCCATTTATCTACGAGATCCG
TTTCTCCAAAAGGTCATTCACACTTGAAGTATATGACACCGCGAGTCCCA
ACCAACATTGGTCTACCTTGCAGCCCGACGTTATACTTCTGGCATTTGAT
ATTTCGAACAGAGATACCTTGAACAATCTTCGAAATTGGCGAAATGATAT
CACCAGATACTTCCAGAATGGATATGGCGAACGCATTCCCATTATGTTGA
TTGGGTTGAAGAGAGACCTGAGGGTGGAAGGTGATGGTATCATATATCCT
CAAGAGTCGTATCGGATTGCGCAGGAACTTCGATGTGATCGGTATGCGGA
GTGCTCTGCTGTCACTGAGGAACTCTTACCAGAGACGTTTGAAGATATTG
CCCGGCTTGCTGGAATGACGACCACGGCGGCTGGGGGCCAGACTGCTGGA
GCTTGTGTTATTCTTTAGATGGCGGGAAACCACCTTGCGCAAGATGAACA
GATAGTGACCATTCTGCTCCTCGGAGACCCAGGATGTGGAAAAACGACAT
TCCTATCGAGCTTGAAATCCAATCTTCGTAGATACCAAGGTAAGGGACAC
AGTCAAGGGAATCTTGATCGAGAAACCCTCCTACGAGACAGTGATCAGCC
ATTTATCTACGAGATCCGTTTCTCCAAAAGGTCATTCACACTTGAAGTAT
ATGACACCGCGAGTCCCAACCAACATTGGTCTACCTTGCAGCCCGACGTT
ATACTTCTGGCATTTGATATTTCGAACAGAGATACCTTGAACAATCTTCG
AAATTGGCGAAATGATATCACCAGATACTTCCAGAATGGATATGGCGAAC
GCATTCCCATTATGTTGATTGGGTTGAAGAGAGACCTGAGGGTGGAAGGT
GATGGTATCATATATCCTCAAGAGTCGTATCGGATTGCGCAGGAACTTCG
ATGTGATCGGTATGCGGAGTGCTCTGCTGTCACTGAGGAACTCTTACCAG
AGACGTTTGAAGATATTGCCCGGCTTGCTGGAATGACGACCACGGCGGCT
GGGGGCCAGACTGCTGGAGCTTGTGTTATTCTTTAGATGGCGGGAAACCA
CCTTGCGCAAGATGAACAGATAGTGACCATTCTGCTCCTCGGAGACCCAG
GATGTGGAAAAACGACATTCCTATCGAGCTTGAAATCCAATCTTCGTAGA
TACCAAGGTAAGGGACACAGTCAAGGGAATCTTGATCGAGAAACCCTCCT
ACGAGACAGTGATCAGCCATTTATCTACGAGATCCGTTTCTCCAAAAGGT
CATTCACACTTGAAGTATATGACACCGCGAGTCCCAACCAACATTGGTCT
ACCTTGCAGCCCGACGTTATACTTCTGGCATTTGATATTTCGAACAGAGA
TACCTTGAACAATCTTCGAAATTGGCGAAATGATATCACCAGATACTTCC
AGAATGGATATGGCGAACGCATTCCCATTATGTTGATTGGGTTGAAGAGA
GACCTGAGGGTGGAAGGTGATGGTATCATATATCCTCAAGAGTCGTATCG
GATTGCGCAGGAACTTCGATGTGATCGGTATGCGGAGTGCTCTGCTGTCA
CTGAGGAACTCTTACCAGAGACGTTTGAAGATATTGCCCGGCTTGCTGGA
ATGACGACCACGGCGGCTGGGGGCCAGACTGCTGGAGCTTGTGTTATTCT
TTAGATGGCGGGAAACCACCTTGCGCAAGATGAACAGATAGTGACCATTC
TGCTCCTCGGAGACCCAGGATGTGGAAAAACGACATTCCTATCGAGCTTG
AAATCCAATCTTCGTAGATACCAAGGTAAGGGACACAGTCAAGGGAATCT
TGATCGAGAAACCCTCCTACGAGACAGTGATCAGCCATTTATCTACGAGA
TCCGTTTCTCCAAAAGGTCATTCACACTTGAAGTATATGACACCGCGAGT
CCCAACCAACATTGGTCTACCTTGCAGCCCGACGTTATACTTCTGGCATT
TGATATTTCGAACAGAGATACCTTGAACAATCTTCGAAATTGGCGAAATG
ATATCACCAGATACTTCCAGAATGGATATGGCGAACGCATTCCCATTATG
TTGATTGGGTTGAAGAGAGACCTGAGGGTGGAAGGTGATGGTATCATATA
TCCTCAAGAGTCGTATCGGATTGCGCAGGAACTTCGATGTGATCGGTATG
CGGAGTGCTCTGCTGTCACTGAGGAACTCTTACCAGAGACGTTTGAAGAT
ATTGCCCGGCTTGCTGGAATGACGACCACGGCGGCTGGGGGCCAGACTGC
TGGAGCTTGTGTTATTCTTTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003924 | GTPase activity |
| GO:0005525 | GTP binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005837-T1.utr5p1 | KJC3_005837-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005837-T1.utr3p1 | KJC3_005837-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR001806 |
| DBxref | PFAM:PF08477 |
| DBxref | PFAM:PF00071 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:3887865..3889217 + |
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