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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:3897087..3899337- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005841-T1 ID=KJC3_005841-T1|Name=KJC3_005841-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2251bp|location=Sequence derived from alignment at ch4:3897087..3899337- (Aspergillus niger KJC3)
CACGGCGGGTCGGCGCAACATTTTTTGACCAATTCCGCATTGATTTGGGA
CAAGGGTGTGACTTGGAAGGACTATAGAATACAGCTATACTTAAAATGGC
CCCCAAACCACCCCCGGGCACCTCCGCCAGAGCATGGGACGGAGTGACGC
CCGCCCTGTCGGAATGGGTGCTGGATGCCGTTGCTTCTATGGGCTTCACC
CGCATGACCCCCGTTCAGGCTTCTGCGATTCCCTTGTTCATGGCGCATAA
AGATGTCGTTGTTGAAGCAGTCACAGGAAGTGGAAAGACCTTGTCTTTCT
TGATTCCAGTTGTCGAGAAGCTTTTGCGCCTGGAAGAACCACTCAAGAAA
CACCATGTCGGAGCCATCATCATCTCTCCAACCAGGTTGGTCATACCGTA
TACCGTTGAAAAGGTCACGGTCACAGTACTGACAGTTGCGCTTAAGAGAA
CTCGCATCGCAGATTTACAACGTTCTGACATCGTTGCTCGCCTTCCATCC
TCCATCCGCCTCCACTCTCAAACCCTCCGATGATGACGATGATGCACCTC
GTCAGAAATTCCCCTCCTCGACCCTCAAAGTTGTCCCGCAGCTCCTTCTC
GGTGGTTCGACCACTCCGGCTGAGGATTTGAGTACCTTCTTGAAGCGGTC
TCCCAATCTGTTGGTATCTACGCCAGGACGACTGTTGGAGTTGCTCTCTT
CACCCCATGTCCACTGCCCCCAGTCGTCTTTCGAAATGCTTGTCATGGAT
GAAGCGGACAGGCTTCTGGATCTTGGATTCAAGGATACACTACAGAACAT
CTTGCGCCGTCTACCCAAGCAACGGCGCACGGGGTTGTTCAGTGCCAGTG
TCAGTGAGGCTGTTGATCAGATTGTTCGGGTTGGTCTGCGCAACCCCGTC
AAAGTCATGGTCAAGGTAAAGGGCACTTCAGGTGTTCAGGATAAACGCAC
ACCCGCTAGGTCCGTACCCTTGTTCCTCCATCATTGAAGCATCCTGTAAC
TGACAGCCATACTAGCTTGCAAATGACGTACCTCACAGCTCCCCCAACTC
ACAAATTCCCTGCCATCAAACACATTCTCTACTCACTCGAGCCCGCTCCT
CAAAAGACCATCATGTTCGTCTCAACATGCTCGGGTGTCGACTACCTCTC
CGCAATCCTTCCTTCAATCATCGGCGATGACTTCCAACTGATCCCGCTGC
ACGGCAAACACCAAGCAAACGTCCGCGAAAAGAACTTCAACCGCTTCGTC
AACTCCCACACCCCCGCCATTCTCCTCACCACCGACGTTGCTTCCCGTGG
ACTAGACATCCCCTCAGTCGACGTCGTAATACAGATTGACCCCCCTTCAG
ACCCAAAGACTTTCATCCACAGATGCGGCCGTGCCGGACGTGCAGGCCGC
AAAGGTCTGAGTGTGGTCCTTCTTCACCCCGGCCGAGAGGAAGACTACGT
CTCGTTCCTCGAAGTCCGCAAGACCCCCGTCGCACCGTATCCTCACACTC
TCACCATAACCGACGCAGACGCCGCTGCAGCCACCGAAACGGCACGTAAA
GCCGTCCTTGCAGACCGCGCACTACACGACAGGGGCCAGAAGGCCTTCGT
CAGCTGGTTCCGAAGCTACAGCAAGCACCAGGCTAGCAGCATATTCCGCG
TCGCAGACCTCGATTGGGAAGGACTAGGCAATGCATGGGGTCTCCTGAAG
CTTCCCAAGATGCCCGAGTTGAGAAACTTCCAAGGTGACCGGACGCTCGG
CGTGAACTTGGACTGGGAGAACTACGCATACAAGGACAAACAGCGCGAGA
AGCGCCGGAAGGAACAAGTGCAGGAGAATGCCGAGAACGGTGTCGCGGAC
GATCAAGCTGCTGGCAAGAAGCGCTCCAGCGAGAGCGTCGCGTGGAGCAG
GAATCTCGACAACCGGAATAAAAAGCTGAAGCGTCGGGAGGCCAAGCAAG
CGCGTCAGCAGAAGGACAAATGGGAGAAGATGACGGAGGAAGAGCGACAA
AAGGTGCTCGAGACGGAGAAGATGCTTGAGCAGATCCGGGTGAAGAACGA
AGAAGAACGACTGCTTAGGCGTGCAGCCAAAGATAAGGAATCTAAGGCTG
CTGGTGGGGATGATGATGATGAGTTCAAGGGGTTTGACTGATTGATATGT
CTGATTGGATTGGCATGTAGTATATACATTATATCTTATCTAGTTGTCTG
ATACCACGTCCGTATCTTTAGATTCTTTCAAATGCAAAGAGTCATTAGAG
C back to topCoding sequence (CDS) from alignment at ch4:3897087..3899337- >KJC3_005841-T1 ID=KJC3_005841-T1|Name=KJC3_005841-T1|organism=Aspergillus niger KJC3|type=CDS|length=5787bp|location=Sequence derived from alignment at ch4:3897087..3899337- (Aspergillus niger KJC3)
CTTGCAAATGACGTACCTCACAGCTCCCCCAACTCACAAATTCCCTGCCA
TCAAACACATTCTCTACTCACTCGAGCCCGCTCCTCAAAAGACCATCATG
TTCGTCTCAACATGCTCGGGTGTCGACTACCTCTCCGCAATCCTTCCTTC
AATCATCGGCGATGACTTCCAACTGATCCCGCTGCACGGCAAACACCAAG
CAAACGTCCGCGAAAAGAACTTCAACCGCTTCGTCAACTCCCACACCCCC
GCCATTCTCCTCACCACCGACGTTGCTTCCCGTGGACTAGACATCCCCTC
AGTCGACGTCGTAATACAGATTGACCCCCCTTCAGACCCAAAGACTTTCA
TCCACAGATGCGGCCGTGCCGGACGTGCAGGCCGCAAAGGTCTGAGTGTG
GTCCTTCTTCACCCCGGCCGAGAGGAAGACTACGTCTCGTTCCTCGAAGT
CCGCAAGACCCCCGTCGCACCGTATCCTCACACTCTCACCATAACCGACG
CAGACGCCGCTGCAGCCACCGAAACGGCACGTAAAGCCGTCCTTGCAGAC
CGCGCACTACACGACAGGGGCCAGAAGGCCTTCGTCAGCTGGTTCCGAAG
CTACAGCAAGCACCAGGCTAGCAGCATATTCCGCGTCGCAGACCTCGATT
GGGAAGGACTAGGCAATGCATGGGGTCTCCTGAAGCTTCCCAAGATGCCC
GAGTTGAGAAACTTCCAAGGTGACCGGACGCTCGGCGTGAACTTGGACTG
GGAGAACTACGCATACAAGGACAAACAGCGCGAGAAGCGCCGGAAGGAAC
AAGTGCAGGAGAATGCCGAGAACGGTGTCGCGGACGATCAAGCTGCTGGC
AAGAAGCGCTCCAGCGAGAGCGTCGCGTGGAGCAGGAATCTCGACAACCG
GAATAAAAAGCTGAAGCGTCGGGAGGCCAAGCAAGCGCGTCAGCAGAAGG
ACAAATGGGAGAAGATGACGGAGGAAGAGCGACAAAAGGTGCTCGAGACG
GAGAAGATGCTTGAGCAGATCCGGGTGAAGAACGAAGAAGAACGACTGCT
TAGGCGTGCAGCCAAAGATAAGGAATCTAAGGCTGCTGGTGGGGATGATG
ATGATGAGTTCAAGGGGTTTGACTGAAGAACTCGCATCGCAGATTTACAA
CGTTCTGACATCGTTGCTCGCCTTCCATCCTCCATCCGCCTCCACTCTCA
AACCCTCCGATGATGACGATGATGCACCTCGTCAGAAATTCCCCTCCTCG
ACCCTCAAAGTTGTCCCGCAGCTCCTTCTCGGTGGTTCGACCACTCCGGC
TGAGGATTTGAGTACCTTCTTGAAGCGGTCTCCCAATCTGTTGGTATCTA
CGCCAGGACGACTGTTGGAGTTGCTCTCTTCACCCCATGTCCACTGCCCC
CAGTCGTCTTTCGAAATGCTTGTCATGGATGAAGCGGACAGGCTTCTGGA
TCTTGGATTCAAGGATACACTACAGAACATCTTGCGCCGTCTACCCAAGC
AACGGCGCACGGGGTTGTTCAGTGCCAGTGTCAGTGAGGCTGTTGATCAG
ATTGTTCGGGTTGGTCTGCGCAACCCCGTCAAAGTCATGGTCAAGGTAAA
GGGCACTTCAGGTGTTCAGGATAAACGCACACCCGCTAGATGGCCCCCAA
ACCACCCCCGGGCACCTCCGCCAGAGCATGGGACGGAGTGACGCCCGCCC
TGTCGGAATGGGTGCTGGATGCCGTTGCTTCTATGGGCTTCACCCGCATG
ACCCCCGTTCAGGCTTCTGCGATTCCCTTGTTCATGGCGCATAAAGATGT
CGTTGTTGAAGCAGTCACAGGAAGTGGAAAGACCTTGTCTTTCTTGATTC
CAGTTGTCGAGAAGCTTTTGCGCCTGGAAGAACCACTCAAGAAACACCAT
GTCGGAGCCATCATCATCTCTCCAACCAGCTTGCAAATGACGTACCTCAC
AGCTCCCCCAACTCACAAATTCCCTGCCATCAAACACATTCTCTACTCAC
TCGAGCCCGCTCCTCAAAAGACCATCATGTTCGTCTCAACATGCTCGGGT
GTCGACTACCTCTCCGCAATCCTTCCTTCAATCATCGGCGATGACTTCCA
ACTGATCCCGCTGCACGGCAAACACCAAGCAAACGTCCGCGAAAAGAACT
TCAACCGCTTCGTCAACTCCCACACCCCCGCCATTCTCCTCACCACCGAC
GTTGCTTCCCGTGGACTAGACATCCCCTCAGTCGACGTCGTAATACAGAT
TGACCCCCCTTCAGACCCAAAGACTTTCATCCACAGATGCGGCCGTGCCG
GACGTGCAGGCCGCAAAGGTCTGAGTGTGGTCCTTCTTCACCCCGGCCGA
GAGGAAGACTACGTCTCGTTCCTCGAAGTCCGCAAGACCCCCGTCGCACC
GTATCCTCACACTCTCACCATAACCGACGCAGACGCCGCTGCAGCCACCG
AAACGGCACGTAAAGCCGTCCTTGCAGACCGCGCACTACACGACAGGGGC
CAGAAGGCCTTCGTCAGCTGGTTCCGAAGCTACAGCAAGCACCAGGCTAG
CAGCATATTCCGCGTCGCAGACCTCGATTGGGAAGGACTAGGCAATGCAT
GGGGTCTCCTGAAGCTTCCCAAGATGCCCGAGTTGAGAAACTTCCAAGGT
GACCGGACGCTCGGCGTGAACTTGGACTGGGAGAACTACGCATACAAGGA
CAAACAGCGCGAGAAGCGCCGGAAGGAACAAGTGCAGGAGAATGCCGAGA
ACGGTGTCGCGGACGATCAAGCTGCTGGCAAGAAGCGCTCCAGCGAGAGC
GTCGCGTGGAGCAGGAATCTCGACAACCGGAATAAAAAGCTGAAGCGTCG
GGAGGCCAAGCAAGCGCGTCAGCAGAAGGACAAATGGGAGAAGATGACGG
AGGAAGAGCGACAAAAGGTGCTCGAGACGGAGAAGATGCTTGAGCAGATC
CGGGTGAAGAACGAAGAAGAACGACTGCTTAGGCGTGCAGCCAAAGATAA
GGAATCTAAGGCTGCTGGTGGGGATGATGATGATGAGTTCAAGGGGTTTG
ACTGAAGAACTCGCATCGCAGATTTACAACGTTCTGACATCGTTGCTCGC
CTTCCATCCTCCATCCGCCTCCACTCTCAAACCCTCCGATGATGACGATG
ATGCACCTCGTCAGAAATTCCCCTCCTCGACCCTCAAAGTTGTCCCGCAG
CTCCTTCTCGGTGGTTCGACCACTCCGGCTGAGGATTTGAGTACCTTCTT
GAAGCGGTCTCCCAATCTGTTGGTATCTACGCCAGGACGACTGTTGGAGT
TGCTCTCTTCACCCCATGTCCACTGCCCCCAGTCGTCTTTCGAAATGCTT
GTCATGGATGAAGCGGACAGGCTTCTGGATCTTGGATTCAAGGATACACT
ACAGAACATCTTGCGCCGTCTACCCAAGCAACGGCGCACGGGGTTGTTCA
GTGCCAGTGTCAGTGAGGCTGTTGATCAGATTGTTCGGGTTGGTCTGCGC
AACCCCGTCAAAGTCATGGTCAAGGTAAAGGGCACTTCAGGTGTTCAGGA
TAAACGCACACCCGCTAGATGGCCCCCAAACCACCCCCGGGCACCTCCGC
CAGAGCATGGGACGGAGTGACGCCCGCCCTGTCGGAATGGGTGCTGGATG
CCGTTGCTTCTATGGGCTTCACCCGCATGACCCCCGTTCAGGCTTCTGCG
ATTCCCTTGTTCATGGCGCATAAAGATGTCGTTGTTGAAGCAGTCACAGG
AAGTGGAAAGACCTTGTCTTTCTTGATTCCAGTTGTCGAGAAGCTTTTGC
GCCTGGAAGAACCACTCAAGAAACACCATGTCGGAGCCATCATCATCTCT
CCAACCAGCTTGCAAATGACGTACCTCACAGCTCCCCCAACTCACAAATT
CCCTGCCATCAAACACATTCTCTACTCACTCGAGCCCGCTCCTCAAAAGA
CCATCATGTTCGTCTCAACATGCTCGGGTGTCGACTACCTCTCCGCAATC
CTTCCTTCAATCATCGGCGATGACTTCCAACTGATCCCGCTGCACGGCAA
ACACCAAGCAAACGTCCGCGAAAAGAACTTCAACCGCTTCGTCAACTCCC
ACACCCCCGCCATTCTCCTCACCACCGACGTTGCTTCCCGTGGACTAGAC
ATCCCCTCAGTCGACGTCGTAATACAGATTGACCCCCCTTCAGACCCAAA
GACTTTCATCCACAGATGCGGCCGTGCCGGACGTGCAGGCCGCAAAGGTC
TGAGTGTGGTCCTTCTTCACCCCGGCCGAGAGGAAGACTACGTCTCGTTC
CTCGAAGTCCGCAAGACCCCCGTCGCACCGTATCCTCACACTCTCACCAT
AACCGACGCAGACGCCGCTGCAGCCACCGAAACGGCACGTAAAGCCGTCC
TTGCAGACCGCGCACTACACGACAGGGGCCAGAAGGCCTTCGTCAGCTGG
TTCCGAAGCTACAGCAAGCACCAGGCTAGCAGCATATTCCGCGTCGCAGA
CCTCGATTGGGAAGGACTAGGCAATGCATGGGGTCTCCTGAAGCTTCCCA
AGATGCCCGAGTTGAGAAACTTCCAAGGTGACCGGACGCTCGGCGTGAAC
TTGGACTGGGAGAACTACGCATACAAGGACAAACAGCGCGAGAAGCGCCG
GAAGGAACAAGTGCAGGAGAATGCCGAGAACGGTGTCGCGGACGATCAAG
CTGCTGGCAAGAAGCGCTCCAGCGAGAGCGTCGCGTGGAGCAGGAATCTC
GACAACCGGAATAAAAAGCTGAAGCGTCGGGAGGCCAAGCAAGCGCGTCA
GCAGAAGGACAAATGGGAGAAGATGACGGAGGAAGAGCGACAAAAGGTGC
TCGAGACGGAGAAGATGCTTGAGCAGATCCGGGTGAAGAACGAAGAAGAA
CGACTGCTTAGGCGTGCAGCCAAAGATAAGGAATCTAAGGCTGCTGGTGG
GGATGATGATGATGAGTTCAAGGGGTTTGACTGAAGAACTCGCATCGCAG
ATTTACAACGTTCTGACATCGTTGCTCGCCTTCCATCCTCCATCCGCCTC
CACTCTCAAACCCTCCGATGATGACGATGATGCACCTCGTCAGAAATTCC
CCTCCTCGACCCTCAAAGTTGTCCCGCAGCTCCTTCTCGGTGGTTCGACC
ACTCCGGCTGAGGATTTGAGTACCTTCTTGAAGCGGTCTCCCAATCTGTT
GGTATCTACGCCAGGACGACTGTTGGAGTTGCTCTCTTCACCCCATGTCC
ACTGCCCCCAGTCGTCTTTCGAAATGCTTGTCATGGATGAAGCGGACAGG
CTTCTGGATCTTGGATTCAAGGATACACTACAGAACATCTTGCGCCGTCT
ACCCAAGCAACGGCGCACGGGGTTGTTCAGTGCCAGTGTCAGTGAGGCTG
TTGATCAGATTGTTCGGGTTGGTCTGCGCAACCCCGTCAAAGTCATGGTC
AAGGTAAAGGGCACTTCAGGTGTTCAGGATAAACGCACACCCGCTAGATG
GCCCCCAAACCACCCCCGGGCACCTCCGCCAGAGCATGGGACGGAGTGAC
GCCCGCCCTGTCGGAATGGGTGCTGGATGCCGTTGCTTCTATGGGCTTCA
CCCGCATGACCCCCGTTCAGGCTTCTGCGATTCCCTTGTTCATGGCGCAT
AAAGATGTCGTTGTTGAAGCAGTCACAGGAAGTGGAAAGACCTTGTCTTT
CTTGATTCCAGTTGTCGAGAAGCTTTTGCGCCTGGAAGAACCACTCAAGA
AACACCATGTCGGAGCCATCATCATCTCTCCAACCAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0005524 | ATP binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005841-T1.utr3p1 | KJC3_005841-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005841-T1.utr5p1 | KJC3_005841-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR014014 |
| DBxref | InterPro:IPR000629 |
| DBxref | InterPro:IPR011545 |
| DBxref | InterPro:IPR001650 |
| DBxref | InterPro:IPR025313 |
| DBxref | InterPro:IPR014001 |
| DBxref | PFAM:PF00271 |
| DBxref | PFAM:PF13959 |
| DBxref | PFAM:PF00270 |
| Product | ATP-dependent rRNA helicase spb4 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:3897087..3899337 - |
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