You are here

Home

KJC3_005872-T1, KJC3_005872-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005872-T1
Unique NameKJC3_005872-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:3988328..3989533-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005872-T1 ID=KJC3_005872-T1|Name=KJC3_005872-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1206bp|location=Sequence derived from alignment at ch4:3988328..3989533- (Aspergillus niger KJC3)
CTCTTCCATCTGCACTTGCTCCGCCACGATTCATTTGTCCTGTCACTAAT
AGTCAGCTTTAGAGGGATTTAGGGCACATTAACTCTACAGTTGGTGTTTG
GGGTTCTTCACGTCTCGCAACAACCCCTCTCCGCCGCCGTCTTGACTGTG
TCCCCTTAACATCCTACCCCGCTCTCCTTTCCACACCGACAAACACTCCA
AGGTTCTAAGGCAAACATATACACATCATGGGAAGCCAAAAACGGATAGC
TAAGGTGAATAGAACTGATACTCTCCCCTTCGTAATCTGCGCCACATCCT
CCGGATTGGAAAACAAGAGTATGATTGACTAACAAATGACTCACAGGAGC
TCGCCGAGCTTGTCGAATCTCCCCCGGAGGGCATCGTGGTAAAGCTGGCC
GACGAATCCAACCTTTACGCATGGAACGTATACATGGACGGACCTGAGGG
ATCTCCTTACCAGGTGAGACTTTCCTACCTGTCACCGACCCTAAACGAAA
TTATGAACCCTCACTAACACACAACTCTGTCGTACGTAGAACGGCAAATT
CCAACTTAACCTGTCCCTTCCCACCGAATACCCCTTCAAACCCCCTACCG
TCTCCTTCAAAACGAAGATCTACCATCCCAATGTGACCAACGATGACAAG
GGAAGCATGTGCCTGGGCATGCTTAGGGCCGACGAATGGAAGCCTAGTTC
CAAGATTTTGGCAGTGCTGCAGTTCGCGCGTCAGTTGCTCGCAGAACCGA
TGCCCGATGATGCCGTCGAGGGACGGATCGCAGAGCAGTTTAAAAATGAC
CACAATCGGTACGAGGAAGTTGCGAAGGAGTGGACACGCAAGTATGCCAC
TGTTTAGTGAGATGATGACTGCTACTGCTACCGCTGGTGCTTGCGGGCCG
GTACAGCAGGTAGACAGATACTTTCGGGGGAGCCTGCGTGTTGAGAGTGA
TACAAGATGACGGGAGATATACACTGAAGAGGGACTAAAAAGACATGAAT
GTTTTGGCTTGGCTAGATATATACGATATGAACATGTTTGAGCATCACGA
CTGCATGGGATGAATTATTGTTAGCATTGTTTGCTTGTGGAATAAAGGAC
ATGAAATCATAATAGATACTATATGCATTTGGTGAGACTATTATATATGG
GCGCTTACACCTTATCGGCATCTTTAGCACTTCCGGGTGAATCTAATGCA
AAGCCT
back to top

Coding sequence (CDS) from alignment at ch4:3988328..3989533-

>KJC3_005872-T1 ID=KJC3_005872-T1|Name=KJC3_005872-T1|organism=Aspergillus niger KJC3|type=CDS|length=1386bp|location=Sequence derived from alignment at ch4:3988328..3989533- (Aspergillus niger KJC3)
AACGGCAAATTCCAACTTAACCTGTCCCTTCCCACCGAATACCCCTTCAA
ACCCCCTACCGTCTCCTTCAAAACGAAGATCTACCATCCCAATGTGACCA
ACGATGACAAGGGAAGCATGTGCCTGGGCATGCTTAGGGCCGACGAATGG
AAGCCTAGTTCCAAGATTTTGGCAGTGCTGCAGTTCGCGCGTCAGTTGCT
CGCAGAACCGATGCCCGATGATGCCGTCGAGGGACGGATCGCAGAGCAGT
TTAAAAATGACCACAATCGGTACGAGGAAGTTGCGAAGGAGTGGACACGC
AAGTATGCCACTGTTTAGGAGCTCGCCGAGCTTGTCGAATCTCCCCCGGA
GGGCATCGTGGTAAAGCTGGCCGACGAATCCAACCTTTACGCATGGAACG
TATACATGGACGGACCTGAGGGATCTCCTTACCAGATGGGAAGCCAAAAA
CGGATAGCTAAGAACGGCAAATTCCAACTTAACCTGTCCCTTCCCACCGA
ATACCCCTTCAAACCCCCTACCGTCTCCTTCAAAACGAAGATCTACCATC
CCAATGTGACCAACGATGACAAGGGAAGCATGTGCCTGGGCATGCTTAGG
GCCGACGAATGGAAGCCTAGTTCCAAGATTTTGGCAGTGCTGCAGTTCGC
GCGTCAGTTGCTCGCAGAACCGATGCCCGATGATGCCGTCGAGGGACGGA
TCGCAGAGCAGTTTAAAAATGACCACAATCGGTACGAGGAAGTTGCGAAG
GAGTGGACACGCAAGTATGCCACTGTTTAGGAGCTCGCCGAGCTTGTCGA
ATCTCCCCCGGAGGGCATCGTGGTAAAGCTGGCCGACGAATCCAACCTTT
ACGCATGGAACGTATACATGGACGGACCTGAGGGATCTCCTTACCAGATG
GGAAGCCAAAAACGGATAGCTAAGAACGGCAAATTCCAACTTAACCTGTC
CCTTCCCACCGAATACCCCTTCAAACCCCCTACCGTCTCCTTCAAAACGA
AGATCTACCATCCCAATGTGACCAACGATGACAAGGGAAGCATGTGCCTG
GGCATGCTTAGGGCCGACGAATGGAAGCCTAGTTCCAAGATTTTGGCAGT
GCTGCAGTTCGCGCGTCAGTTGCTCGCAGAACCGATGCCCGATGATGCCG
TCGAGGGACGGATCGCAGAGCAGTTTAAAAATGACCACAATCGGTACGAG
GAAGTTGCGAAGGAGTGGACACGCAAGTATGCCACTGTTTAGGAGCTCGC
CGAGCTTGTCGAATCTCCCCCGGAGGGCATCGTGGTAAAGCTGGCCGACG
AATCCAACCTTTACGCATGGAACGTATACATGGACGGACCTGAGGGATCT
CCTTACCAGATGGGAAGCCAAAAACGGATAGCTAAG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_005872KJC3_005872Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005872-T1KJC3_005872-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005872-T1.cdsKJC3_005872-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005872-T1.utr3p1KJC3_005872-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005872-T1.exon3KJC3_005872-T1.exon3Aspergillus niger KJC3exon
KJC3_005872-T1.exon2KJC3_005872-T1.exon2Aspergillus niger KJC3exon
KJC3_005872-T1.exon1KJC3_005872-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005872-T1.utr5p1KJC3_005872-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR016135
DBxrefInterPro:IPR000608
DBxrefPFAM:PF00179
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:3988328..3989533 -
Powered by Drupal