You are here

Home

KJC3_005885-T1, KJC3_005885-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005885-T1
Unique NameKJC3_005885-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:4022019..4024264+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005885-T1 ID=KJC3_005885-T1|Name=KJC3_005885-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2246bp|location=Sequence derived from alignment at ch4:4022019..4024264+ (Aspergillus niger KJC3)
AGAACCCAACTTTAGCTTTTGCCTTCAACTTATGTTATCTACTCTGTAGT
GTCTGACACCTTTATTCCTGTCTCTGCAAGCACTATGTCAATGCGATCAA
ATCCGTAACAATGAGTGAAACGTGCGCCAATCCCCTACTACTGGGGTGGA
TCAAAGAATGGCTAGACGAGGCTCGAGAACGCAACAGCAAGGGCGCCATA
GTGTCAGTACTATTTCATGACGCGATACAATGATCGAATTTGATGCTGAA
TTATGCACAGATACAAAAAGGCGTACGAGTCGATGAAAGCTTGTCCCTTA
GTTTTCCAACACCCCTCCGAGGCTCAGCAGCTAAATGGACTCGGCCCAAA
ACTATGTGATCGCTTGACCGAAAAGCTAAAGGCTTACTGCGAAGAAAATG
CACTTCCAATGCCCGGACATCCTCAAAAATGTAAGTCTCGGTAGTACTGT
CGTGTCTGAGCAGGCCCTAAAAATCGTAGCGGCAAGCAGCAAAAGAGCAT
CCGATGAGGGCACAGCAGAAAGTCAGCCAGCCAAGAAACCTCGAAAGGCA
AGACCTTATGTCCCGACTTTACGATCTGGCCCGTATGCGTTGATTTTAGC
CCTGGCAACCCTTAATGAGAACTCTTCTCAAGGCCTAACCAAGGCACAAC
TGATTGACTTGGCGCAGCCGAATTGCGATAGTTCATTCACGGCACCTGCC
GAGTCGTCCAAATTCCATACTGCCTGGAGCTCAATGAAGACGCTCTTGCA
GAAGGAGATTGTATATGATTTCGGGCGTCCTCTGAAGAAGTACGCACTCA
CAGAAGAGGGATGGGAGGTGGCGAAAAGGATGAAGAAGGTCGCCCTGCCG
TCAAATCAAGGCACTTTGGCGTTTGGGAATCAATCGGTAACAAATCCAAT
ACCTAATATGCTATGACGATGTCTAACCTGCGTAGGGGCCAAGCACAAGC
CATACTGGGGACACCCAGTTGCAGGACAACATGGGTGGCAACGGCACAGA
GCTAATCGACGATGAGGAGACACCCACAGCCCATAACGATACCCAAAGAT
GGGAACCTGCTTCTGACGGAACAGTAACTCCCATAACAATCCCTCCCGAC
AGCTTTACGGTCCAGCTGGTTCTGGATAACCGCGAAGTTCGATCATCCAA
AGACAGAGATTACATCACCAACGAACTACACAAGAAGGGAGCCAGTCCCG
AGGTGCGCGCACTAGAACTAGGCGACGTCATGTGGGTAGCTAAATTCCAC
AATCCGACGTTCCTCTCCCAGTACGGCGAGGAAGGCGACGAAGTCATGCT
CGACTGGATCGTTGAGCGCAAAAGAATCGACGATCTCATCAGCTCCATGA
AAGACGGACGGTTCCACGAACAGAAGTTCCGTCTCCGTCGTTCAGGAGTG
AAAAACGTCATCTACCTCATTGAAGAATTCACCGTCCCCTCAGACCCTAA
TACCGCCATGGCCGGCAAGTACAACGAAATGGTAGCGTCCGCCATAGCCT
CGACGCAAGTCGTCAACGGCTACTTTGTTAAGAGAACTAAGAACCTCGAC
GATACAATTCAATACCTAGCTAGAATGACCCTCCTGCTTCGCAGAATGTT
CAATTCATCTGCCGGCGGTGTACCATCCTCCACCCTCAGTCTAATCCCTA
GTCGCCAGCTCTCCTCCTCCCAATCATACCTCACGGCCCTGGAACGTCTC
CGGGCAGAGAGCCCCAAGACCACTTACGCCGTCACCTTCTCCACATTTTC
CGCTCTAACCTCCAAATCCGACGTCTTGACCCTCCGAGACGTGTTCCTGA
AAATGCTCATGTGCATCCGGGGCGTAACGGGCGAAAAGGCACTCGAGATT
CAACGGCGGTGGCCGACTCCGCAGGCATTCATCCGTGCTTTTGAAGAGCT
TGATCCTCAGGACCGGGATAATATGGTTTCAGAACGGATGCAAACGCTCG
TTGGACGGAAGAAGATCGCGAAGGTTCTGAGCAAGAAAATCGCAGAGGTA
TGGGGTGAGGATGGGTGATCATTTTTCAGGGGGATTGGTACCTTTTCAGA
ATTGAATTGCGAGCGAATGCATTAGAGCGGAATTCAATAGATTTTCTAGA
CGATTTATATAGCAGCGCACTATTGGTCGTTTGTTGTGTAACTGATGACC
AGTATTTTCAGTTAGTAAAGAAAATCTGACAAGAACCTCAGTTACAGCGC
ACACTGTGAACTACGAAATGTAAAAAAGTGCCTACTGAATACTAAG
back to top

Coding sequence (CDS) from alignment at ch4:4022019..4024264+

>KJC3_005885-T1 ID=KJC3_005885-T1|Name=KJC3_005885-T1|organism=Aspergillus niger KJC3|type=CDS|length=3144bp|location=Sequence derived from alignment at ch4:4022019..4024264+ (Aspergillus niger KJC3)
ATGCACTTCCAATGCCCGGACATCCTCAAAAATGTAAGTCTCGGTAGTAC
TGTCGTGTCTGAGCAGGCCCTAAAAATCGTAGCGGCAAGCAGCAAAAGAG
CATCCGATGAGGGCACAGCAGAAAGTCAGCCAGCCAAGAAACCTCGAAAG
GCAAGACCTTATGTCCCGACTTTACGATCTGGCCCGTATGCGTTGATTTT
AGCCCTGGCAACCCTTAATGAGAACTCTTCTCAAGGCCTAACCAAGGCAC
AACTGATTGACTTGGCGCAGCCGAATTGCGATAGTTCATTCACGGCACCT
GCCGAGTCGTCCAAATTCCATACTGCCTGGAGCTCAATGAAGACGCTCTT
GCAGAAGGAGATTGTATATGATTTCGGGCGTCCTCTGAAGAAGTACGCAC
TCACAGAAGAGGGATGGGAGGTGGCGAAAAGGATGAAGAAGGTCGCCCTG
CCGTCAAATCAAGGCACTTTGGCGTTTGGGAATCAATCGGGGCCAAGCAC
AAGCCATACTGGGGACACCCAGTTGCAGGACAACATGGGTGGCAACGGCA
CAGAGCTAATCGACGATGAGGAGACACCCACAGCCCATAACGATACCCAA
AGATGGGAACCTGCTTCTGACGGAACAGTAACTCCCATAACAATCCCTCC
CGACAGCTTTACGGTCCAGCTGGTTCTGGATAACCGCGAAGTTCGATCAT
CCAAAGACAGAGATTACATCACCAACGAACTACACAAGAAGGGAGCCAGT
CCCGAGGTGCGCGCACTAGAACTAGGCGACGTCATGTGGGTAGCTAAATT
CCACAATCCGACGTTCCTCTCCCAGTACGGCGAGGAAGGCGACGAAGTCA
TGCTCGACTGGATCGTTGAGCGCAAAAGAATCGACGATCTCATCAGCTCC
ATGAAAGACGGACGGTTCCACGAACAGAAGTTCCGTCTCCGTCGTTCAGG
AGTGAAAAACGTCATCTACCTCATTGAAGAATTCACCGTCCCCTCAGACC
CTAATACCGCCATGGCCGGCAAGTACAACGAAATGGTAGCGTCCGCCATA
GCCTCGACGCAAGTCGTCAACGGCTACTTTGTTAAGAGAACTAAGAACCT
CGACGATACAATTCAATACCTAGCTAGAATGACCCTCCTGCTTCGCAGAA
TGTTCAATTCATCTGCCGGCGGTGTACCATCCTCCACCCTCAGTCTAATC
CCTAGTCGCCAGCTCTCCTCCTCCCAATCATACCTCACGGCCCTGGAACG
TCTCCGGGCAGAGAGCCCCAAGACCACTTACGCCGTCACCTTCTCCACAT
TTTCCGCTCTAACCTCCAAATCCGACGTCTTGACCCTCCGAGACGTGTTC
CTGAAAATGCTCATGTGCATCCGGGGCGTAACGGGCGAAAAGGCACTCGA
GATTCAACGGCGGTGGCCGACTCCGCAGGCATTCATCCGTGCTTTTGAAG
AGCTTGATCCTCAGGACCGGGATAATATGGTTTCAGAACGGATGCAAACG
CTCGTTGGACGGAAGAAGATCGCGAAGGTTCTGAGCAAGAAAATCGCAGA
GGTATGGGGTGAGGATGGGTGAATGCACTTCCAATGCCCGGACATCCTCA
AAAATGTAAGTCTCGGTAGTACTGTCGTGTCTGAGCAGGCCCTAAAAATC
GTAGCGGCAAGCAGCAAAAGAGCATCCGATGAGGGCACAGCAGAAAGTCA
GCCAGCCAAGAAACCTCGAAAGGCAAGACCTTATGTCCCGACTTTACGAT
CTGGCCCGTATGCGTTGATTTTAGCCCTGGCAACCCTTAATGAGAACTCT
TCTCAAGGCCTAACCAAGGCACAACTGATTGACTTGGCGCAGCCGAATTG
CGATAGTTCATTCACGGCACCTGCCGAGTCGTCCAAATTCCATACTGCCT
GGAGCTCAATGAAGACGCTCTTGCAGAAGGAGATTGTATATGATTTCGGG
CGTCCTCTGAAGAAGTACGCACTCACAGAAGAGGGATGGGAGGTGGCGAA
AAGGATGAAGAAGGTCGCCCTGCCGTCAAATCAAGGCACTTTGGCGTTTG
GGAATCAATCGGGGCCAAGCACAAGCCATACTGGGGACACCCAGTTGCAG
GACAACATGGGTGGCAACGGCACAGAGCTAATCGACGATGAGGAGACACC
CACAGCCCATAACGATACCCAAAGATGGGAACCTGCTTCTGACGGAACAG
TAACTCCCATAACAATCCCTCCCGACAGCTTTACGGTCCAGCTGGTTCTG
GATAACCGCGAAGTTCGATCATCCAAAGACAGAGATTACATCACCAACGA
ACTACACAAGAAGGGAGCCAGTCCCGAGGTGCGCGCACTAGAACTAGGCG
ACGTCATGTGGGTAGCTAAATTCCACAATCCGACGTTCCTCTCCCAGTAC
GGCGAGGAAGGCGACGAAGTCATGCTCGACTGGATCGTTGAGCGCAAAAG
AATCGACGATCTCATCAGCTCCATGAAAGACGGACGGTTCCACGAACAGA
AGTTCCGTCTCCGTCGTTCAGGAGTGAAAAACGTCATCTACCTCATTGAA
GAATTCACCGTCCCCTCAGACCCTAATACCGCCATGGCCGGCAAGTACAA
CGAAATGGTAGCGTCCGCCATAGCCTCGACGCAAGTCGTCAACGGCTACT
TTGTTAAGAGAACTAAGAACCTCGACGATACAATTCAATACCTAGCTAGA
ATGACCCTCCTGCTTCGCAGAATGTTCAATTCATCTGCCGGCGGTGTACC
ATCCTCCACCCTCAGTCTAATCCCTAGTCGCCAGCTCTCCTCCTCCCAAT
CATACCTCACGGCCCTGGAACGTCTCCGGGCAGAGAGCCCCAAGACCACT
TACGCCGTCACCTTCTCCACATTTTCCGCTCTAACCTCCAAATCCGACGT
CTTGACCCTCCGAGACGTGTTCCTGAAAATGCTCATGTGCATCCGGGGCG
TAACGGGCGAAAAGGCACTCGAGATTCAACGGCGGTGGCCGACTCCGCAG
GCATTCATCCGTGCTTTTGAAGAGCTTGATCCTCAGGACCGGGATAATAT
GGTTTCAGAACGGATGCAAACGCTCGTTGGACGGAAGAAGATCGCGAAGG
TTCTGAGCAAGAAAATCGCAGAGGTATGGGGTGAGGATGGGTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0004518nuclease activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
MUS81KJC3_005885Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005885-T1.utr5p1KJC3_005885-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005885-T1.exon1KJC3_005885-T1.exon1Aspergillus niger KJC3exon
KJC3_005885-T1.exon2KJC3_005885-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005885-T1.cdsKJC3_005885-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005885-T1.utr3p1KJC3_005885-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005885-T1KJC3_005885-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR011335
DBxrefInterPro:IPR036388
DBxrefInterPro:IPR006166
DBxrefPFAM:PF02732
ProductCrossover junction endonuclease mus81
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:4022019..4024264 +
Powered by Drupal