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KJC3_005887-T1, KJC3_005887-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005887-T1
Unique NameKJC3_005887-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:4031594..4034469+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005887-T1 ID=KJC3_005887-T1|Name=KJC3_005887-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2876bp|location=Sequence derived from alignment at ch4:4031594..4034469+ (Aspergillus niger KJC3)
CCCACTTGAATCACCTCTATTTCATTCTTCCCTCTTTCATCAACTACTAC
TTATACTTCCCAGCTGCGGGTTGACTCTATAGCTATAGCTACTTTCTTTT
CACTCTATCTAGTTTATCAAGTGAATCCGTGGTTCTGGCTATCTTTCACC
CGTTTAACCCCTCCGTCAGCCCCCCCTGATATCTTGAAACCCCGCCTAGA
GTGTTCTTTGTGCGCTCGAGTTTCCCTTATAGCCCCTCCAACTGGCTCGT
CGCTGCATCTCCAGCTCGACGATTGGACCACGCTACGTCCAGGATCATTG
TGTGGACCCTATAGGCATGATAGACCCTGTGTGATCGATTGTCTTTTACT
CTTCCTCTTATTGGCGCAACCTACTGCCACCGCTCCTTGAACATCATCGA
CCCCACAGAGCCATCCCGTCACGTTCTCAATGTCGGTCCCTAGGCCTGGG
ATGCGTGCTCCCATTCCCCCACGGAGCGGCCCAAGGCCACCTATGGGAAG
ACTGGCCAGTCTGAAATCGCCCAATCCAACTCCCATCAGGCGTCCCCAGC
CAATTTCTCGGCCTCAACCCGCCAGGCCAACTACCCACCCCAAAACCTCA
ACTTGCCCTAACCCGGGCTGTCCTGCTCCTCACATCGTTGAGGATGACGG
TCAGAAGGTTTGTTCCGGGTGTGGTACTGTCATCAGTGAAGCAAACATCG
TCTCCGAAGTGACTTTCGGGGAATCGTCGTCGGGTGCGGCAGTCGTTCAG
GGTACCTTCGTCGGCGAAGATCAGTCCCATGTCCGCAGTTATGGCCCTGG
CTTTCAGCGTGGAGGCGCTGAAAGTCGCGAGATTACGGAACAGAACGGCA
ATCGGTACATCACCCAGCTGTCTCGTGCCTTGACTATCCCAGAGAGTGCC
ATGAAGGCTGCTGGTCAAGTGTTCAAGCTAGCAGTCGGATTGAACTTCAT
TCAAGGTCGAAGGACCAAGACTGTAGCTGCTGTATGCTTATATATTGCCT
GCCGTCGGCAGGATGGCAACACCATCATGCTCATCGATTTTGCCGATGTT
CTCATGATCAACGTGTTCAAGCTCGGTCGGACCTACAAAGCACTACTCGA
TGAGTTGCGTCTGGGTGGTAACGTGTTTCTGATGAACCCGATTGATCCGG
AGAGTTTGATCTACAGGTTTGCCAAACAGCTTGAATTTGGGTCGGCTACT
ATGCAGGTGGCGAGTGAGGCGGTCCGTATCGTACAGCGAATGAACCGCGA
TTGGATGACGACGGGTCGTCGTCCCGCTGGTATTTGTGGTGCCGCCTTGA
TCCTTGCAGCCCGAATGAACAACTTTCGCCGCACCGTTCGAGAGGTTGTC
TACGTCGTCAAAGTCACCGAGATCACTATCAGCCAACGTTTGAACGAGTT
CAGCTCCACCGAAAGTGGTGAACTTACAGTCGACCAGTTCCGTTCCGTGC
AGCTGGAGAATGCGCATGACCCACCTTCTTTTGCCAGGGCTAGAGAAGGA
AGGAAGCCTTCACGCTCATTCAAGAGACGGCCCACGGAAACGGCTGCGGA
GATTGAGGGTGATATACAAGAAGCACAGCAACATAGGCGTGTCGACTCAG
ACGGCTTCGCTATTCCTAGTCTTCCTATTGACCCGGCATTACTAGCGGCC
AGCGGCGGTCAACGTCGCCATTCGACTGCCTCTGCTGCAAGCGAAGCCAT
TTCGGACGCTGGCGAGGAGCACGCCAAGTCCGGTCGCCAGAAGGGTCCGA
AGAGACCTCCGCTTCCAGCCCCTTCGCCAGATCAGATTGCCTCGGAAGAG
GCTTTGGAGAATGAAATGACCGCGCTATTATCCAAAGGATCGAACATGTT
CGAGTCTAGTGCCGGTCCTCCAAAGAAGGTCGTGTCTGATAATACGGAGA
TTGACGCTGCTGAGTTTGAGTCGGATCCGGAGGTGTCTAACTGCTTGCTC
TCTCCTGCAGAAGTTGAGATCAAAGAACGGATTTGGGTCCATGAGAATAA
AGATTATCTCCGGGCCCAGCAGGCCAAAGCGCTAAAGCGAGCTCTGGCGG
AGGCTGATTCCCACCCTGGCGCGGACGGTCGCGTGCACAAGCCGCGAAAG
CGCCGCCGCGGTAGACTTGGCGACGTAACTTATCTTGAAGGCGAGGGTGA
AGATGGGGATGGCCGCAGCACTCGGGCTTCGACCCCTGCCGAAGCTACCC
GCCGGATGTTGGAAAGAAGAGGGTTCAGCAAAAAGATCAATTATCGTCTT
TTGGAGTCACTCTTCGGCGATGAGGGGGCTGACGAAGCCTCCAAACCTAA
GGAAGAGAGTTTGAGCCGAAGCCAGAGTCGCAGCCAGAGTGTCGTGTCAC
GACGCAGCGCCAGTATCGAACCAGAGGCGGCCTCGAGGCGTACCGGGCTT
CTAACCCCCTCAGCTAGCCAACCTGCTGGAGCTTCTTTGTCTGCCGCGGC
TCCGGCGCGTGGCTCAGCGGTACCCGCTGCTCAAGCCCCGACGGATCAAG
GTGGAAAAGCAAGTGAGAATGAGCAAGTCCTCGGTCCTGCGGATGGAGCA
AAGAACGAGTATTCAGATGACGAGCAAGAGGATGACTACGACGAGGATGA
TGACATGGAGGATGATGGGGTTGACGCGGCGCTTGCTGGAACCTATGGTG
ACTATTACGACGAGGGGAGTGATTATGGTAGTGATTAATTAAAGTTACGA
TGATAGCAGGGTTGTATTTCACCGCAAGGCATGTACATAAGAAGTCCGGC
GCCAAGTCGACGGGAATTTGATACCCAGTCATTCCAGGCTTAAATCCTGA
AAAGCAACAGATGGGGGGCATATGATCTTCTTCGCCTTGTTCGTTCCTTC
CTTGATGCTTGTCTTGCCATTTTGAG
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Coding sequence (CDS) from alignment at ch4:4031594..4034469+

>KJC3_005887-T1 ID=KJC3_005887-T1|Name=KJC3_005887-T1|organism=Aspergillus niger KJC3|type=CDS|length=2259bp|location=Sequence derived from alignment at ch4:4031594..4034469+ (Aspergillus niger KJC3)
ATGTCGGTCCCTAGGCCTGGGATGCGTGCTCCCATTCCCCCACGGAGCGG
CCCAAGGCCACCTATGGGAAGACTGGCCAGTCTGAAATCGCCCAATCCAA
CTCCCATCAGGCGTCCCCAGCCAATTTCTCGGCCTCAACCCGCCAGGCCA
ACTACCCACCCCAAAACCTCAACTTGCCCTAACCCGGGCTGTCCTGCTCC
TCACATCGTTGAGGATGACGGTCAGAAGGTTTGTTCCGGGTGTGGTACTG
TCATCAGTGAAGCAAACATCGTCTCCGAAGTGACTTTCGGGGAATCGTCG
TCGGGTGCGGCAGTCGTTCAGGGTACCTTCGTCGGCGAAGATCAGTCCCA
TGTCCGCAGTTATGGCCCTGGCTTTCAGCGTGGAGGCGCTGAAAGTCGCG
AGATTACGGAACAGAACGGCAATCGGTACATCACCCAGCTGTCTCGTGCC
TTGACTATCCCAGAGAGTGCCATGAAGGCTGCTGGTCAAGTGTTCAAGCT
AGCAGTCGGATTGAACTTCATTCAAGGTCGAAGGACCAAGACTGTAGCTG
CTGTATGCTTATATATTGCCTGCCGTCGGCAGGATGGCAACACCATCATG
CTCATCGATTTTGCCGATGTTCTCATGATCAACGTGTTCAAGCTCGGTCG
GACCTACAAAGCACTACTCGATGAGTTGCGTCTGGGTGGTAACGTGTTTC
TGATGAACCCGATTGATCCGGAGAGTTTGATCTACAGGTTTGCCAAACAG
CTTGAATTTGGGTCGGCTACTATGCAGGTGGCGAGTGAGGCGGTCCGTAT
CGTACAGCGAATGAACCGCGATTGGATGACGACGGGTCGTCGTCCCGCTG
GTATTTGTGGTGCCGCCTTGATCCTTGCAGCCCGAATGAACAACTTTCGC
CGCACCGTTCGAGAGGTTGTCTACGTCGTCAAAGTCACCGAGATCACTAT
CAGCCAACGTTTGAACGAGTTCAGCTCCACCGAAAGTGGTGAACTTACAG
TCGACCAGTTCCGTTCCGTGCAGCTGGAGAATGCGCATGACCCACCTTCT
TTTGCCAGGGCTAGAGAAGGAAGGAAGCCTTCACGCTCATTCAAGAGACG
GCCCACGGAAACGGCTGCGGAGATTGAGGGTGATATACAAGAAGCACAGC
AACATAGGCGTGTCGACTCAGACGGCTTCGCTATTCCTAGTCTTCCTATT
GACCCGGCATTACTAGCGGCCAGCGGCGGTCAACGTCGCCATTCGACTGC
CTCTGCTGCAAGCGAAGCCATTTCGGACGCTGGCGAGGAGCACGCCAAGT
CCGGTCGCCAGAAGGGTCCGAAGAGACCTCCGCTTCCAGCCCCTTCGCCA
GATCAGATTGCCTCGGAAGAGGCTTTGGAGAATGAAATGACCGCGCTATT
ATCCAAAGGATCGAACATGTTCGAGTCTAGTGCCGGTCCTCCAAAGAAGG
TCGTGTCTGATAATACGGAGATTGACGCTGCTGAGTTTGAGTCGGATCCG
GAGGTGTCTAACTGCTTGCTCTCTCCTGCAGAAGTTGAGATCAAAGAACG
GATTTGGGTCCATGAGAATAAAGATTATCTCCGGGCCCAGCAGGCCAAAG
CGCTAAAGCGAGCTCTGGCGGAGGCTGATTCCCACCCTGGCGCGGACGGT
CGCGTGCACAAGCCGCGAAAGCGCCGCCGCGGTAGACTTGGCGACGTAAC
TTATCTTGAAGGCGAGGGTGAAGATGGGGATGGCCGCAGCACTCGGGCTT
CGACCCCTGCCGAAGCTACCCGCCGGATGTTGGAAAGAAGAGGGTTCAGC
AAAAAGATCAATTATCGTCTTTTGGAGTCACTCTTCGGCGATGAGGGGGC
TGACGAAGCCTCCAAACCTAAGGAAGAGAGTTTGAGCCGAAGCCAGAGTC
GCAGCCAGAGTGTCGTGTCACGACGCAGCGCCAGTATCGAACCAGAGGCG
GCCTCGAGGCGTACCGGGCTTCTAACCCCCTCAGCTAGCCAACCTGCTGG
AGCTTCTTTGTCTGCCGCGGCTCCGGCGCGTGGCTCAGCGGTACCCGCTG
CTCAAGCCCCGACGGATCAAGGTGGAAAAGCAAGTGAGAATGAGCAAGTC
CTCGGTCCTGCGGATGGAGCAAAGAACGAGTATTCAGATGACGAGCAAGA
GGATGACTACGACGAGGATGATGACATGGAGGATGATGGGGTTGACGCGG
CGCTTGCTGGAACCTATGGTGACTATTACGACGAGGGGAGTGATTATGGT
AGTGATTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0017025TBP-class protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006352DNA-templated transcription, initiation
GO:0070897transcription preinitiation complex assembly
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_005887KJC3_005887Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005887-T1.utr5p1KJC3_005887-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005887-T1.exon1KJC3_005887-T1.exon1Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005887-T1.cdsKJC3_005887-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005887-T1.utr3p1KJC3_005887-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005887-T1KJC3_005887-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
NoteBUSCO:EOG092613QA
DBxrefInterPro:IPR036915
DBxrefInterPro:IPR013150
DBxrefInterPro:IPR011665
DBxrefInterPro:IPR013763
DBxrefInterPro:IPR000812
DBxrefPFAM:PF00382
DBxrefPFAM:PF07741
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:4031594..4034469 +
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