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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:4058864..4061248- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005895-T1 ID=KJC3_005895-T1|Name=KJC3_005895-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2385bp|location=Sequence derived from alignment at ch4:4058864..4061248- (Aspergillus niger KJC3)
CCCTCTGACATACTTCTTCTTCTTCTTATTCTCTTTCTTCAGCTTGGATC
GGCCTGCCGTGCTCTTCGTCCTGCTAGCAGCATACAGCACCCCCGGTCGG
AGTGCTCTCAATGTGCTGGGTGAAGCTTTCCCTCCCACCCCCCATTCCGT
GTCGTGACGAGTCCCAATGATGGCGAGTGTCCTGTGTAGACACTCGTCTC
GAGCCGCCTGCATCGGATTGCGATTCTCCCACCCACCAGAGCAGTGACCA
GTTTGTCTGCTCGCCCACGGTCCGAAGTGATGTCGAAGGGTTGCTACACC
TGTCGTCGTCGCCGCATCATTTGCGACAACGGCTTGCCCACATGCCGCAA
GTGCCGCGATGCGGGGAAGGAATGTCTGGGGTATCAGAAGCCTCTCGTTT
GGGTCAAGGGAGGTGTGGCCAGTCGCGGAAAGATGATGGGTCGCAGCTTT
AATGAGGTTATGCGTCCTTCAGATCTCAGGCGCGGTGACTCGAGCCCCTC
TTCCAGCAGCAATGCGTCGCCGCCGTCAGCAGCCGATTCGCCCACCCAGT
CTATAGATATCAGCTTATGCGTACCCCCCAACGTGTCGGGCATCCAGGGT
ATCCTAGAACCAACCCAGTCGGAGGATAACGATAACCAGGATACTCAAGT
GGTCTTGCAAAGAGCTACACCGGTCTCCGCGCCTTGGGGCATGGTGGACC
CGCTGTTCAAGGACCTGAGTCAGCTGTCGCGGTTCTACATTGTGCATTGT
ATGTTTGCTCGTTTTCTCTGCCCATGTGATTCCTGTCTAACCATTCCGAA
GTCAACCAGAACCTTGCCAACTATCTCACCCTCTACTCCGAGACCGGCAA
CCCGTACCGTGACCTCATTCCCCTGGTCGGGGACTCTCCTCTCCTCGCCC
ACGTCCTTGCTGCCACCGGTGCCTTGCATTATGCCATCCTGGCGAGCGGG
GACTTTTCCCTGACGCCATGGTTGTCGGAAGGTTCTCCCGCAGACCGCAC
ATCCCTGTCTCCTGAAGAGGTAGAAAAGTCCGTGATCACCTCCATGTCTC
GGCGTCCGTCGTCCAAGGTGTATGAACATTTTCTCGGACTTAAGCAGCGC
GCCCTAGGGCAGTTATCGAGCGACATTCAGGATCCCGTCTTGCGCAATGA
TAACAGAACTCTCGCTGCGATCACCGTGCTCGCTTTGATGGATGCTATTG
AATCGGGGGATGGTGCCTGGAAGTTCCACCTCGAAGGGGCCAAGAAGCTG
CTTAAAGGCCGCCAAGAACAGGGGGCCTCCAGTCCGCCTCAATGCCTTGT
CAAGTGGCTGGAAGATTTCGCTGTCGATGGCATTCTCCTGTAAGCCATAT
AAACATCGTCCACAGAGACACTACATACTGACACATCCCTCCCAGCATCC
AACTCATGGGCTCCACCCTCGCTCGCCCAGGGTCCCTATCCAAACCCTTC
TACACCTCCAGCATGGGCCCCGCCATGCTCAAGCGTCTCGAAGAAACCTC
CTACGTCGGCTGTCCAGCCTATCTCCTCGAAGTCATCCTGCTCATCCACG
CCGGTCTCTACTTCGACCCGGACGTCGACCCCAACTCGCAACCCTCCATG
ATCTTCACCTCTGCCTTCCTCTCCCAAGACTCCAACCCGCTCCAATCCCC
CGGCGCTCTCCTCCAACACATCCAAGCCTTCGACCCCTATGCCTGGGCCG
AGTCCATGCAAAGCTGCTACTACCTCGCAGACCTGTCCATGCGAACCGCC
CTGGCAACCGTCTTCAAAGGCGCCGTCTACCTCTACGCCAGCCGTGTTCT
CTCCCGACCGCGTCCCGGCGCCGCAACCATCCCCAACCACTTCGGTCTCC
CCTCCGACCACGCCGAAGTGGCAGACCTGATCATTCGCAAAATCGCTCTC
ATCCCTATCGAAGATCCCCACTTCAAATGCCTCATCTGGCCCACCTTCAT
TGCTGGCGCGGAATGCCGAGACCCCGTCCAGCGACCCTTTGTACTCAACA
AGTTGCGCGCGTTGTACTTCAACATCACCAGCGTAAATGTCCGCAATGCG
GCTTGGGTTTTGAGCTTGATGTGGCAGAAACAGGATCAGAAGAAGGCTGA
GAAGCAACAGCAGCAGCAACGGCCTACCACTGATATTCATTCCCATGACG
ATAATAATGATGATGACGATGACTTTGATTGGATTCAGGAATTGGATAAT
TCCAGAATTGACTGGTTGTTTATATAAGAAGTTACCATATTAACACTTCT
TTGTTTTTATTTTTTCTTACCCTTTCATGTGAGGAGGGATATAAGATAAT
CTTTCATTATTGCCCTTCGGGGAAGATATCCATATTTCCACTTATTGTAT
ATAGATGGATATAATTTTAATAATGTACAGTGCAC back to topCoding sequence (CDS) from alignment at ch4:4058864..4061248- >KJC3_005895-T1 ID=KJC3_005895-T1|Name=KJC3_005895-T1|organism=Aspergillus niger KJC3|type=CDS|length=7116bp|location=Sequence derived from alignment at ch4:4058864..4061248- (Aspergillus niger KJC3)
CATCCAACTCATGGGCTCCACCCTCGCTCGCCCAGGGTCCCTATCCAAAC
CCTTCTACACCTCCAGCATGGGCCCCGCCATGCTCAAGCGTCTCGAAGAA
ACCTCCTACGTCGGCTGTCCAGCCTATCTCCTCGAAGTCATCCTGCTCAT
CCACGCCGGTCTCTACTTCGACCCGGACGTCGACCCCAACTCGCAACCCT
CCATGATCTTCACCTCTGCCTTCCTCTCCCAAGACTCCAACCCGCTCCAA
TCCCCCGGCGCTCTCCTCCAACACATCCAAGCCTTCGACCCCTATGCCTG
GGCCGAGTCCATGCAAAGCTGCTACTACCTCGCAGACCTGTCCATGCGAA
CCGCCCTGGCAACCGTCTTCAAAGGCGCCGTCTACCTCTACGCCAGCCGT
GTTCTCTCCCGACCGCGTCCCGGCGCCGCAACCATCCCCAACCACTTCGG
TCTCCCCTCCGACCACGCCGAAGTGGCAGACCTGATCATTCGCAAAATCG
CTCTCATCCCTATCGAAGATCCCCACTTCAAATGCCTCATCTGGCCCACC
TTCATTGCTGGCGCGGAATGCCGAGACCCCGTCCAGCGACCCTTTGTACT
CAACAAGTTGCGCGCGTTGTACTTCAACATCACCAGCGTAAATGTCCGCA
ATGCGGCTTGGGTTTTGAGCTTGATGTGGCAGAAACAGGATCAGAAGAAG
GCTGAGAAGCAACAGCAGCAGCAACGGCCTACCACTGATATTCATTCCCA
TGACGATAATAATGATGATGACGATGACTTTGATTGGATTCAGGAATTGG
ATAATTCCAGAATTGACTGGTTGTTTATATAATCAACCAGAACCTTGCCA
ACTATCTCACCCTCTACTCCGAGACCGGCAACCCGTACCGTGACCTCATT
CCCCTGGTCGGGGACTCTCCTCTCCTCGCCCACGTCCTTGCTGCCACCGG
TGCCTTGCATTATGCCATCCTGGCGAGCGGGGACTTTTCCCTGACGCCAT
GGTTGTCGGAAGGTTCTCCCGCAGACCGCACATCCCTGTCTCCTGAAGAG
GTAGAAAAGTCCGTGATCACCTCCATGTCTCGGCGTCCGTCGTCCAAGGT
GTATGAACATTTTCTCGGACTTAAGCAGCGCGCCCTAGGGCAGTTATCGA
GCGACATTCAGGATCCCGTCTTGCGCAATGATAACAGAACTCTCGCTGCG
ATCACCGTGCTCGCTTTGATGGATGCTATTGAATCGGGGGATGGTGCCTG
GAAGTTCCACCTCGAAGGGGCCAAGAAGCTGCTTAAAGGCCGCCAAGAAC
AGGGGGCCTCCAGTCCGCCTCAATGCCTTGTCAAGTGGCTGGAAGATTTC
GCTGTCGATGGCATTCTCCTATCTCAGGCGCGGTGACTCGAGCCCCTCTT
CCAGCAGCAATGCGTCGCCGCCGTCAGCAGCCGATTCGCCCACCCAGTCT
ATAGATATCAGCTTATGCGTACCCCCCAACGTGTCGGGCATCCAGGGTAT
CCTAGAACCAACCCAGTCGGAGGATAACGATAACCAGGATACTCAAGTGG
TCTTGCAAAGAGCTACACCGGTCTCCGCGCCTTGGGGCATGGTGGACCCG
CTGTTCAAGGACCTGAGTCAGCTGTCGCGGTTCTACATTGTGCATTATGT
CGAAGGGTTGCTACACCTGTCGTCGTCGCCGCATCATTTGCGACAACGGC
TTGCCCACATGCCGCAAGTGCCGCGATGCGGGGAAGGAATGTCTGGGGTA
TCAGAAGCCTCTCGTTTGGGTCAAGGGAGCATCCAACTCATGGGCTCCAC
CCTCGCTCGCCCAGGGTCCCTATCCAAACCCTTCTACACCTCCAGCATGG
GCCCCGCCATGCTCAAGCGTCTCGAAGAAACCTCCTACGTCGGCTGTCCA
GCCTATCTCCTCGAAGTCATCCTGCTCATCCACGCCGGTCTCTACTTCGA
CCCGGACGTCGACCCCAACTCGCAACCCTCCATGATCTTCACCTCTGCCT
TCCTCTCCCAAGACTCCAACCCGCTCCAATCCCCCGGCGCTCTCCTCCAA
CACATCCAAGCCTTCGACCCCTATGCCTGGGCCGAGTCCATGCAAAGCTG
CTACTACCTCGCAGACCTGTCCATGCGAACCGCCCTGGCAACCGTCTTCA
AAGGCGCCGTCTACCTCTACGCCAGCCGTGTTCTCTCCCGACCGCGTCCC
GGCGCCGCAACCATCCCCAACCACTTCGGTCTCCCCTCCGACCACGCCGA
AGTGGCAGACCTGATCATTCGCAAAATCGCTCTCATCCCTATCGAAGATC
CCCACTTCAAATGCCTCATCTGGCCCACCTTCATTGCTGGCGCGGAATGC
CGAGACCCCGTCCAGCGACCCTTTGTACTCAACAAGTTGCGCGCGTTGTA
CTTCAACATCACCAGCGTAAATGTCCGCAATGCGGCTTGGGTTTTGAGCT
TGATGTGGCAGAAACAGGATCAGAAGAAGGCTGAGAAGCAACAGCAGCAG
CAACGGCCTACCACTGATATTCATTCCCATGACGATAATAATGATGATGA
CGATGACTTTGATTGGATTCAGGAATTGGATAATTCCAGAATTGACTGGT
TGTTTATATAATCAACCAGAACCTTGCCAACTATCTCACCCTCTACTCCG
AGACCGGCAACCCGTACCGTGACCTCATTCCCCTGGTCGGGGACTCTCCT
CTCCTCGCCCACGTCCTTGCTGCCACCGGTGCCTTGCATTATGCCATCCT
GGCGAGCGGGGACTTTTCCCTGACGCCATGGTTGTCGGAAGGTTCTCCCG
CAGACCGCACATCCCTGTCTCCTGAAGAGGTAGAAAAGTCCGTGATCACC
TCCATGTCTCGGCGTCCGTCGTCCAAGGTGTATGAACATTTTCTCGGACT
TAAGCAGCGCGCCCTAGGGCAGTTATCGAGCGACATTCAGGATCCCGTCT
TGCGCAATGATAACAGAACTCTCGCTGCGATCACCGTGCTCGCTTTGATG
GATGCTATTGAATCGGGGGATGGTGCCTGGAAGTTCCACCTCGAAGGGGC
CAAGAAGCTGCTTAAAGGCCGCCAAGAACAGGGGGCCTCCAGTCCGCCTC
AATGCCTTGTCAAGTGGCTGGAAGATTTCGCTGTCGATGGCATTCTCCTA
TCTCAGGCGCGGTGACTCGAGCCCCTCTTCCAGCAGCAATGCGTCGCCGC
CGTCAGCAGCCGATTCGCCCACCCAGTCTATAGATATCAGCTTATGCGTA
CCCCCCAACGTGTCGGGCATCCAGGGTATCCTAGAACCAACCCAGTCGGA
GGATAACGATAACCAGGATACTCAAGTGGTCTTGCAAAGAGCTACACCGG
TCTCCGCGCCTTGGGGCATGGTGGACCCGCTGTTCAAGGACCTGAGTCAG
CTGTCGCGGTTCTACATTGTGCATTATGTCGAAGGGTTGCTACACCTGTC
GTCGTCGCCGCATCATTTGCGACAACGGCTTGCCCACATGCCGCAAGTGC
CGCGATGCGGGGAAGGAATGTCTGGGGTATCAGAAGCCTCTCGTTTGGGT
CAAGGGAGCATCCAACTCATGGGCTCCACCCTCGCTCGCCCAGGGTCCCT
ATCCAAACCCTTCTACACCTCCAGCATGGGCCCCGCCATGCTCAAGCGTC
TCGAAGAAACCTCCTACGTCGGCTGTCCAGCCTATCTCCTCGAAGTCATC
CTGCTCATCCACGCCGGTCTCTACTTCGACCCGGACGTCGACCCCAACTC
GCAACCCTCCATGATCTTCACCTCTGCCTTCCTCTCCCAAGACTCCAACC
CGCTCCAATCCCCCGGCGCTCTCCTCCAACACATCCAAGCCTTCGACCCC
TATGCCTGGGCCGAGTCCATGCAAAGCTGCTACTACCTCGCAGACCTGTC
CATGCGAACCGCCCTGGCAACCGTCTTCAAAGGCGCCGTCTACCTCTACG
CCAGCCGTGTTCTCTCCCGACCGCGTCCCGGCGCCGCAACCATCCCCAAC
CACTTCGGTCTCCCCTCCGACCACGCCGAAGTGGCAGACCTGATCATTCG
CAAAATCGCTCTCATCCCTATCGAAGATCCCCACTTCAAATGCCTCATCT
GGCCCACCTTCATTGCTGGCGCGGAATGCCGAGACCCCGTCCAGCGACCC
TTTGTACTCAACAAGTTGCGCGCGTTGTACTTCAACATCACCAGCGTAAA
TGTCCGCAATGCGGCTTGGGTTTTGAGCTTGATGTGGCAGAAACAGGATC
AGAAGAAGGCTGAGAAGCAACAGCAGCAGCAACGGCCTACCACTGATATT
CATTCCCATGACGATAATAATGATGATGACGATGACTTTGATTGGATTCA
GGAATTGGATAATTCCAGAATTGACTGGTTGTTTATATAATCAACCAGAA
CCTTGCCAACTATCTCACCCTCTACTCCGAGACCGGCAACCCGTACCGTG
ACCTCATTCCCCTGGTCGGGGACTCTCCTCTCCTCGCCCACGTCCTTGCT
GCCACCGGTGCCTTGCATTATGCCATCCTGGCGAGCGGGGACTTTTCCCT
GACGCCATGGTTGTCGGAAGGTTCTCCCGCAGACCGCACATCCCTGTCTC
CTGAAGAGGTAGAAAAGTCCGTGATCACCTCCATGTCTCGGCGTCCGTCG
TCCAAGGTGTATGAACATTTTCTCGGACTTAAGCAGCGCGCCCTAGGGCA
GTTATCGAGCGACATTCAGGATCCCGTCTTGCGCAATGATAACAGAACTC
TCGCTGCGATCACCGTGCTCGCTTTGATGGATGCTATTGAATCGGGGGAT
GGTGCCTGGAAGTTCCACCTCGAAGGGGCCAAGAAGCTGCTTAAAGGCCG
CCAAGAACAGGGGGCCTCCAGTCCGCCTCAATGCCTTGTCAAGTGGCTGG
AAGATTTCGCTGTCGATGGCATTCTCCTATCTCAGGCGCGGTGACTCGAG
CCCCTCTTCCAGCAGCAATGCGTCGCCGCCGTCAGCAGCCGATTCGCCCA
CCCAGTCTATAGATATCAGCTTATGCGTACCCCCCAACGTGTCGGGCATC
CAGGGTATCCTAGAACCAACCCAGTCGGAGGATAACGATAACCAGGATAC
TCAAGTGGTCTTGCAAAGAGCTACACCGGTCTCCGCGCCTTGGGGCATGG
TGGACCCGCTGTTCAAGGACCTGAGTCAGCTGTCGCGGTTCTACATTGTG
CATTATGTCGAAGGGTTGCTACACCTGTCGTCGTCGCCGCATCATTTGCG
ACAACGGCTTGCCCACATGCCGCAAGTGCCGCGATGCGGGGAAGGAATGT
CTGGGGTATCAGAAGCCTCTCGTTTGGGTCAAGGGAGCATCCAACTCATG
GGCTCCACCCTCGCTCGCCCAGGGTCCCTATCCAAACCCTTCTACACCTC
CAGCATGGGCCCCGCCATGCTCAAGCGTCTCGAAGAAACCTCCTACGTCG
GCTGTCCAGCCTATCTCCTCGAAGTCATCCTGCTCATCCACGCCGGTCTC
TACTTCGACCCGGACGTCGACCCCAACTCGCAACCCTCCATGATCTTCAC
CTCTGCCTTCCTCTCCCAAGACTCCAACCCGCTCCAATCCCCCGGCGCTC
TCCTCCAACACATCCAAGCCTTCGACCCCTATGCCTGGGCCGAGTCCATG
CAAAGCTGCTACTACCTCGCAGACCTGTCCATGCGAACCGCCCTGGCAAC
CGTCTTCAAAGGCGCCGTCTACCTCTACGCCAGCCGTGTTCTCTCCCGAC
CGCGTCCCGGCGCCGCAACCATCCCCAACCACTTCGGTCTCCCCTCCGAC
CACGCCGAAGTGGCAGACCTGATCATTCGCAAAATCGCTCTCATCCCTAT
CGAAGATCCCCACTTCAAATGCCTCATCTGGCCCACCTTCATTGCTGGCG
CGGAATGCCGAGACCCCGTCCAGCGACCCTTTGTACTCAACAAGTTGCGC
GCGTTGTACTTCAACATCACCAGCGTAAATGTCCGCAATGCGGCTTGGGT
TTTGAGCTTGATGTGGCAGAAACAGGATCAGAAGAAGGCTGAGAAGCAAC
AGCAGCAGCAACGGCCTACCACTGATATTCATTCCCATGACGATAATAAT
GATGATGACGATGACTTTGATTGGATTCAGGAATTGGATAATTCCAGAAT
TGACTGGTTGTTTATATAATCAACCAGAACCTTGCCAACTATCTCACCCT
CTACTCCGAGACCGGCAACCCGTACCGTGACCTCATTCCCCTGGTCGGGG
ACTCTCCTCTCCTCGCCCACGTCCTTGCTGCCACCGGTGCCTTGCATTAT
GCCATCCTGGCGAGCGGGGACTTTTCCCTGACGCCATGGTTGTCGGAAGG
TTCTCCCGCAGACCGCACATCCCTGTCTCCTGAAGAGGTAGAAAAGTCCG
TGATCACCTCCATGTCTCGGCGTCCGTCGTCCAAGGTGTATGAACATTTT
CTCGGACTTAAGCAGCGCGCCCTAGGGCAGTTATCGAGCGACATTCAGGA
TCCCGTCTTGCGCAATGATAACAGAACTCTCGCTGCGATCACCGTGCTCG
CTTTGATGGATGCTATTGAATCGGGGGATGGTGCCTGGAAGTTCCACCTC
GAAGGGGCCAAGAAGCTGCTTAAAGGCCGCCAAGAACAGGGGGCCTCCAG
TCCGCCTCAATGCCTTGTCAAGTGGCTGGAAGATTTCGCTGTCGATGGCA
TTCTCCTATCTCAGGCGCGGTGACTCGAGCCCCTCTTCCAGCAGCAATGC
GTCGCCGCCGTCAGCAGCCGATTCGCCCACCCAGTCTATAGATATCAGCT
TATGCGTACCCCCCAACGTGTCGGGCATCCAGGGTATCCTAGAACCAACC
CAGTCGGAGGATAACGATAACCAGGATACTCAAGTGGTCTTGCAAAGAGC
TACACCGGTCTCCGCGCCTTGGGGCATGGTGGACCCGCTGTTCAAGGACC
TGAGTCAGCTGTCGCGGTTCTACATTGTGCATTATGTCGAAGGGTTGCTA
CACCTGTCGTCGTCGCCGCATCATTTGCGACAACGGCTTGCCCACATGCC
GCAAGTGCCGCGATGCGGGGAAGGAATGTCTGGGGTATCAGAAGCCTCTC
GTTTGGGTCAAGGGAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005895-T1.utr3p1 | KJC3_005895-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005895-T1.utr5p1 | KJC3_005895-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR021858 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF11951 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:4058864..4061248 - |
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