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KJC3_006005-T1, KJC3_006005-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006005-T1
Unique NameKJC3_006005-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:4379417..4381080+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006005-T1 ID=KJC3_006005-T1|Name=KJC3_006005-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1664bp|location=Sequence derived from alignment at ch4:4379417..4381080+ (Aspergillus niger KJC3)
GTCCCAGTCTCTGCTGCATCTCAAACTCTGAAAATAGCAACCCTACCTTT
TTTACGGGTCCGTTGTGACTGTTGGTCAGACACACTTTAAGCTTATCGCC
AAATTTGGAGCCATGGGCGGAGATCCTTGACCACGAGGCACGCCAGGCAG
GAACAATACTACCCACCACCATTGCCACATTAGGCGCACGTACGCCGGAA
GATGCGCTCTCAGTAATCGACCAAGTTATCGTAAGGATGCCGCGTAGAGC
ACATAAGAAGTCGCGCAATGGCTGCTTTGAATGTAAGCGGCGCCACATTA
AAGTAAGTTTGATGGGTTCGCCTGGCACACCTGTAGCATCAGAATCTGAC
TTGTGCAGTGCGACGAGAAACAACCGATATGTTCCAACTGTCGGTCTTCG
GAACGCTCCTGCGAATACGCGGATCCGTTCATACGGGCGGCCAGTTCGCA
GTCAAGCAAGTCATCGATCCCGTCACCTGCTGGCACGGTGACGGATGAAC
TACCCCTGCGTTCGCCTGCACATCCCTCTTCTCTTTCTGAAAGTCCCCCA
GTCAACATGCTTCACGCTGAGCTGTTCTTCAACTTGACAAATTACACCCT
TTGCGGCCTCAGCGAAGGGGAGACTGGATGGATTGGTACCCCGGACGTGA
TGCGAATTGTTGTCTCGACGCCCTATCTCATCAATCAAGTCCTTGCACTA
AGTGCTCTACACTTGAGTGTAGCGCGTCCAGGAAATAGAGAGTGGTATCG
GCGCCATGCAGCCCATCTACAAACGCATGCATTGGAGATTTACAATCAAA
GGAGACTCGAATTTGACCAGGAGAGCAGTGTCCCACTATTTCTTTTCTCC
TGCATCCTCGGCATGCATACTCTCTGTGACGTCTTGGTTCACCGTGAAGA
CACCAGTTTCGATAGATTTCTGGAACGATTCGTGCATTGCCTGAAACTCC
AACTTGGTATTCGCGTCGTGATTTCTTCGACCACGTGGCAATCACTACAG
GAGTCAATTCTCAAGAAACCGCTTCAAGACGGAGCAATCTTGTTCAATTG
GGATACGAATCTGGGACCCGAGTGCGCAAGACTCTTGCGGCTCATTGAAG
GAGCTAAATTGGGCGATGCCATTACTTCCACCTATCGCAGTGCGGTCCAG
GCGCTGCAAAAGTCCATGAATGCAGCCATGAGAGGTTCGCTGAAGAATAT
AAGCGGAGTTACGGGCTGGCCTGTCATAGTCAGCCCAGAATATGCCGAAC
ATTTGGCAATGCAACGGCCCGAAGCTCTGGTAATCCTGGCTCATTACGCT
GTGATTCTACACTGGCATCGGCACTTCTGGTTGTTTGGCGATGGTGGCCG
CTTCCTTATTGAGTCCATCAACAGGTATCTGGGCCCGAGCTGGGCAGAGT
GGTTAGAGTGGCCAAACCGGAGCTTGAGTGAACCTAGTCAGTTAGGTGAA
ATATCGTAATTCCCCTGTGACCGGCGATTGAGCATGCAACGATCATTGGA
GAGCTTACGCCAGACGTTAAAGATTTTGGTGACTGCGCTGGTAGCGATTC
TCGACATACATACCCACTCTCATCTTGTGGTTCGGAGGTGATATTCTTTT
CCATGGAGACTGTACATACTTTCCGCGTCATTCACAGCCCTATCGTATGA
CCCCAAGCACTTTC
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Coding sequence (CDS) from alignment at ch4:4379417..4381080+

>KJC3_006005-T1 ID=KJC3_006005-T1|Name=KJC3_006005-T1|organism=Aspergillus niger KJC3|type=CDS|length=2334bp|location=Sequence derived from alignment at ch4:4379417..4381080+ (Aspergillus niger KJC3)
ATGCCGCGTAGAGCACATAAGAAGTCGCGCAATGGCTGCTTTGAATGTAA
GCGGCGCCACATTAAATGCGACGAGAAACAACCGATATGTTCCAACTGTC
GGTCTTCGGAACGCTCCTGCGAATACGCGGATCCGTTCATACGGGCGGCC
AGTTCGCAGTCAAGCAAGTCATCGATCCCGTCACCTGCTGGCACGGTGAC
GGATGAACTACCCCTGCGTTCGCCTGCACATCCCTCTTCTCTTTCTGAAA
GTCCCCCAGTCAACATGCTTCACGCTGAGCTGTTCTTCAACTTGACAAAT
TACACCCTTTGCGGCCTCAGCGAAGGGGAGACTGGATGGATTGGTACCCC
GGACGTGATGCGAATTGTTGTCTCGACGCCCTATCTCATCAATCAAGTCC
TTGCACTAAGTGCTCTACACTTGAGTGTAGCGCGTCCAGGAAATAGAGAG
TGGTATCGGCGCCATGCAGCCCATCTACAAACGCATGCATTGGAGATTTA
CAATCAAAGGAGACTCGAATTTGACCAGGAGAGCAGTGTCCCACTATTTC
TTTTCTCCTGCATCCTCGGCATGCATACTCTCTGTGACGTCTTGGTTCAC
CGTGAAGACACCAGTTTCGATAGATTTCTGGAACGATTCGTGCATTGCCT
GAAACTCCAACTTGGTATTCGCGTCGTGATTTCTTCGACCACGTGGCAAT
CACTACAGGAGTCAATTCTCAAGAAACCGCTTCAAGACGGAGCAATCTTG
TTCAATTGGGATACGAATCTGGGACCCGAGTGCGCAAGACTCTTGCGGCT
CATTGAAGGAGCTAAATTGGGCGATGCCATTACTTCCACCTATCGCAGTG
CGGTCCAGGCGCTGCAAAAGTCCATGAATGCAGCCATGAGAGGTTCGCTG
AAGAATATAAGCGGAGTTACGGGCTGGCCTGTCATAGTCAGCCCAGAATA
TGCCGAACATTTGGCAATGCAACGGCCCGAAGCTCTGGTAATCCTGGCTC
ATTACGCTGTGATTCTACACTGGCATCGGCACTTCTGGTTGTTTGGCGAT
GGTGGCCGCTTCCTTATTGAGTCCATCAACAGGTATCTGGGCCCGAGCTG
GGCAGAGTGGTTAGAGTGGCCAAACCGGAGCTTGAGTGAACCTAGTCAGT
TAGGTGAAATATCGTAAATGCCGCGTAGAGCACATAAGAAGTCGCGCAAT
GGCTGCTTTGAATGTAAGCGGCGCCACATTAAATGCGACGAGAAACAACC
GATATGTTCCAACTGTCGGTCTTCGGAACGCTCCTGCGAATACGCGGATC
CGTTCATACGGGCGGCCAGTTCGCAGTCAAGCAAGTCATCGATCCCGTCA
CCTGCTGGCACGGTGACGGATGAACTACCCCTGCGTTCGCCTGCACATCC
CTCTTCTCTTTCTGAAAGTCCCCCAGTCAACATGCTTCACGCTGAGCTGT
TCTTCAACTTGACAAATTACACCCTTTGCGGCCTCAGCGAAGGGGAGACT
GGATGGATTGGTACCCCGGACGTGATGCGAATTGTTGTCTCGACGCCCTA
TCTCATCAATCAAGTCCTTGCACTAAGTGCTCTACACTTGAGTGTAGCGC
GTCCAGGAAATAGAGAGTGGTATCGGCGCCATGCAGCCCATCTACAAACG
CATGCATTGGAGATTTACAATCAAAGGAGACTCGAATTTGACCAGGAGAG
CAGTGTCCCACTATTTCTTTTCTCCTGCATCCTCGGCATGCATACTCTCT
GTGACGTCTTGGTTCACCGTGAAGACACCAGTTTCGATAGATTTCTGGAA
CGATTCGTGCATTGCCTGAAACTCCAACTTGGTATTCGCGTCGTGATTTC
TTCGACCACGTGGCAATCACTACAGGAGTCAATTCTCAAGAAACCGCTTC
AAGACGGAGCAATCTTGTTCAATTGGGATACGAATCTGGGACCCGAGTGC
GCAAGACTCTTGCGGCTCATTGAAGGAGCTAAATTGGGCGATGCCATTAC
TTCCACCTATCGCAGTGCGGTCCAGGCGCTGCAAAAGTCCATGAATGCAG
CCATGAGAGGTTCGCTGAAGAATATAAGCGGAGTTACGGGCTGGCCTGTC
ATAGTCAGCCCAGAATATGCCGAACATTTGGCAATGCAACGGCCCGAAGC
TCTGGTAATCCTGGCTCATTACGCTGTGATTCTACACTGGCATCGGCACT
TCTGGTTGTTTGGCGATGGTGGCCGCTTCCTTATTGAGTCCATCAACAGG
TATCTGGGCCCGAGCTGGGCAGAGTGGTTAGAGTGGCCAAACCGGAGCTT
GAGTGAACCTAGTCAGTTAGGTGAAATATCGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0042025host cell nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_006005KJC3_006005Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006005-T1.utr5p1KJC3_006005-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006005-T1.exon1KJC3_006005-T1.exon1Aspergillus niger KJC3exon
KJC3_006005-T1.exon2KJC3_006005-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006005-T1.cdsKJC3_006005-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006005-T1.utr3p1KJC3_006005-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006005-T1KJC3_006005-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036864
DBxrefInterPro:IPR001138
DBxrefPFAM:PF00172
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:4379417..4381080 +
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