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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:4481238..4482833- Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006041-T1 ID=KJC3_006041-T1|Name=KJC3_006041-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1596bp|location=Sequence derived from alignment at ch4:4481238..4482833- (Aspergillus niger KJC3)
ATGTCGTATGTTCGTTCTCTCGCGCTCTCCGGCCCTCGTCTTGTCCTTCT
TCCCCCCCCCCCTCTCCCTCTTATAAACTCCCTTCTGGGTTGTTCCTCGA
TTCCCCGGCTCCTAGGAATCGTTCAGGCTGTTTCCGTTGCCTCCCCCTTT
ACTTCCCCCTTACCATCCCCGATGGCATCCTTCATGCAGTCTCTGCCGGT
CTGCTCGGCCACTCGCAAGCAGTCAACCGCTGTTCCCTTTTATTTGCAAA
AAGCTTCACAGTCCAGAGTCTCGTCAGGGACGCGTAGCTCCTTCTCTTCG
CTATGTTCTTCCGCTAGATTGACCCCCTCTCGTAAGTCGCGACCCTTTCC
GTCCGTTCCACCCACGGCCTATCCCATCGGGATAGTAAGCATGGCTGTTT
CTGAGCAGCAAATACCTGGAGGGTAACAAAAAGAATCCGTCGAGCTTTTC
CTGACTTGCTCTTAGAACTCGCTTCTCGTCACTCCTCCCAAATCACCTCT
CAGCCCCAAGTTGCCGCCCAGCAATGTCGGACTTTCCTCGTTCAACTCAA
GCGGCAATCTCAGACTCTTAAGGAAACCCCGGTATCGCAACCGCCGCCCA
ACCTGCAACTCACAAACCTCCCTTATTTCATCCGTCGCACAGCCTCCAAC
CAACTCCCCGTATATCTTGTTACCAAGGCCGGCGGTACCAAGCAACAAAC
CAAGCTCCAGAAGACTGAAGGCGATTTGGATGCCCTGAGGAACGATCTGG
CGCAGTACCTGGGACTGGAGTCGGGTGACCCCCGCGCTCCCAAGAGCCCG
GATGTCACTATTAACCGTCTTAACGGTCACATCATTGTCAAGGTACGTCC
TCTACGATCTGCCAGTTGATCACGGCCGAGCTAACCGGATTGCTTTACTT
AGGGCTGGCGCAAACCTGAGATCCTGAAGTTCCTTCAGGAACGCAACTTC
TAAGCAAGAACGACATGAGATGAAAAAGGATTCATCTCTGGATCCCCTCC
CGCTCCTCTTCTACCCTCAATCCTACGTCGGCACCAACTCATTGAATTCG
ACGATACTGCCACATACACACGCTTGTCTATTGTCACGCCTATCACAGGG
AGCGATGGGGATTCAGGGACAGAATGAAACCACACACTGCAGACTTGGTA
ACAAGAAGACAAAAAAGGGCCAAACCAGAACGACGGGATGAAAAGAAAAT
AAGCAGCGCATATCTGCGATGGTCAGGGATGGTCGATATAGTTGGTTATA
ATGTTTCCCGGCCCCATTTTCCTCTTTTTCCTCTCAAGTTTCCCTCTACT
TACTTTATTCCTCACCTTTGTATTATCTTTCTCTCCTACTAGTGCTGGTG
TTCCTGTGACAACTCCCTTTCTTTCGCGGAGATTTTGTTTTTCTGGCTGT
TGTATGTATGTATACTGGCGTGATCTCTACCTTTTATTTCGCTTTTCTTT
CATCTCTCAAGTCTACGGCGAACTGCTGCGGGTTCGGTACATGATTACTA
TCTATTTATCGGAAAGTGGTCTCATCTCCTCCACCCTGCCGCTATCTACT
AGCGTGTAGTAGTAGTATCAATCGATCTAACGTCTTCCATTACTTT back to topCoding sequence (CDS) from alignment at ch4:4481238..4482833- >KJC3_006041-T1 ID=KJC3_006041-T1|Name=KJC3_006041-T1|organism=Aspergillus niger KJC3|type=CDS|length=2277bp|location=Sequence derived from alignment at ch4:4481238..4482833- (Aspergillus niger KJC3)
GGCTGGCGCAAACCTGAGATCCTGAAGTTCCTTCAGGAACGCAACTTCTA
AAACTCGCTTCTCGTCACTCCTCCCAAATCACCTCTCAGCCCCAAGTTGC
CGCCCAGCAATGTCGGACTTTCCTCGTTCAACTCAAGCGGCAATCTCAGA
CTCTTAAGGAAACCCCGGTATCGCAACCGCCGCCCAACCTGCAACTCACA
AACCTCCCTTATTTCATCCGTCGCACAGCCTCCAACCAACTCCCCGTATA
TCTTGTTACCAAGGCCGGCGGTACCAAGCAACAAACCAAGCTCCAGAAGA
CTGAAGGCGATTTGGATGCCCTGAGGAACGATCTGGCGCAGTACCTGGGA
CTGGAGTCGGGTGACCCCCGCGCTCCCAAGAGCCCGGATGTCACTATTAA
CCGTCTTAACGGTCACATCATTGTCAAGATGTCGTATGTTCGTTCTCTCG
CGCTCTCCGGCCCTCGTCTTGTCCTTCTTCCCCCCCCCCCTCTCCCTCTT
ATAAACTCCCTTCTGGGTTGTTCCTCGATTCCCCGGCTCCTAGGAATCGT
TCAGGCTGTTTCCGTTGCCTCCCCCTTTACTTCCCCCTTACCATCCCCGA
TGGCATCCTTCATGCAGTCTCTGCCGGTCTGCTCGGCCACTCGCAAGCAG
TCAACCGCTGTTCCCTTTTATTTGCAAAAAGCTTCACAGTCCAGAGTCTC
GTCAGGGACGCGTAGCTCCTTCTCTTCGCTATGTTCTTCCGCTAGATTGA
CCCCCTCTCGGCTGGCGCAAACCTGAGATCCTGAAGTTCCTTCAGGAACG
CAACTTCTAAAACTCGCTTCTCGTCACTCCTCCCAAATCACCTCTCAGCC
CCAAGTTGCCGCCCAGCAATGTCGGACTTTCCTCGTTCAACTCAAGCGGC
AATCTCAGACTCTTAAGGAAACCCCGGTATCGCAACCGCCGCCCAACCTG
CAACTCACAAACCTCCCTTATTTCATCCGTCGCACAGCCTCCAACCAACT
CCCCGTATATCTTGTTACCAAGGCCGGCGGTACCAAGCAACAAACCAAGC
TCCAGAAGACTGAAGGCGATTTGGATGCCCTGAGGAACGATCTGGCGCAG
TACCTGGGACTGGAGTCGGGTGACCCCCGCGCTCCCAAGAGCCCGGATGT
CACTATTAACCGTCTTAACGGTCACATCATTGTCAAGATGTCGTATGTTC
GTTCTCTCGCGCTCTCCGGCCCTCGTCTTGTCCTTCTTCCCCCCCCCCCT
CTCCCTCTTATAAACTCCCTTCTGGGTTGTTCCTCGATTCCCCGGCTCCT
AGGAATCGTTCAGGCTGTTTCCGTTGCCTCCCCCTTTACTTCCCCCTTAC
CATCCCCGATGGCATCCTTCATGCAGTCTCTGCCGGTCTGCTCGGCCACT
CGCAAGCAGTCAACCGCTGTTCCCTTTTATTTGCAAAAAGCTTCACAGTC
CAGAGTCTCGTCAGGGACGCGTAGCTCCTTCTCTTCGCTATGTTCTTCCG
CTAGATTGACCCCCTCTCGGCTGGCGCAAACCTGAGATCCTGAAGTTCCT
TCAGGAACGCAACTTCTAAAACTCGCTTCTCGTCACTCCTCCCAAATCAC
CTCTCAGCCCCAAGTTGCCGCCCAGCAATGTCGGACTTTCCTCGTTCAAC
TCAAGCGGCAATCTCAGACTCTTAAGGAAACCCCGGTATCGCAACCGCCG
CCCAACCTGCAACTCACAAACCTCCCTTATTTCATCCGTCGCACAGCCTC
CAACCAACTCCCCGTATATCTTGTTACCAAGGCCGGCGGTACCAAGCAAC
AAACCAAGCTCCAGAAGACTGAAGGCGATTTGGATGCCCTGAGGAACGAT
CTGGCGCAGTACCTGGGACTGGAGTCGGGTGACCCCCGCGCTCCCAAGAG
CCCGGATGTCACTATTAACCGTCTTAACGGTCACATCATTGTCAAGATGT
CGTATGTTCGTTCTCTCGCGCTCTCCGGCCCTCGTCTTGTCCTTCTTCCC
CCCCCCCCTCTCCCTCTTATAAACTCCCTTCTGGGTTGTTCCTCGATTCC
CCGGCTCCTAGGAATCGTTCAGGCTGTTTCCGTTGCCTCCCCCTTTACTT
CCCCCTTACCATCCCCGATGGCATCCTTCATGCAGTCTCTGCCGGTCTGC
TCGGCCACTCGCAAGCAGTCAACCGCTGTTCCCTTTTATTTGCAAAAAGC
TTCACAGTCCAGAGTCTCGTCAGGGACGCGTAGCTCCTTCTCTTCGCTAT
GTTCTTCCGCTAGATTGACCCCCTCTC back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006041-T1.utr3p1 | KJC3_006041-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR007740 |
| DBxref | PFAM:PF05046 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:4481238..4482833 - |
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