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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:4483126..4484611+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006042-T1 ID=KJC3_006042-T1|Name=KJC3_006042-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1486bp|location=Sequence derived from alignment at ch4:4483126..4484611+ (Aspergillus niger KJC3)
ATGGCAGCCAACGTTCCTCCTTCCGCTGAGACCCTTCTCAGCGGTGCTGC
CGCCCACCCGCCCAAGACCGCTGAAGAGATCGCCAACCAGTATGACCTGC
TGCCCAAGCTGATCCCCTACCTCGACCGCCATCTGGTCTTCCCTCTTCTC
GAGTTCAGCTCCGGCTCCCAGGAAGATGACAAGGAGATGATCCGCGCCAA
GTACGAGCTGTTGAAGCACACCAACATGACCGACTATGTGGCCAACCTGT
GGAAGGAAATTAACGACTCCGACACCATCCCCGACGAGTTCGTCAAGAAG
AGAGAGGAGGTCCTCGCCAAGTTGCAACACTACCAGGAGCAGAGCGCCAA
GATCACCGAGCTGCTGCAGGATGAGGATGTCGTCGGCAACCTGCGCAGCG
ACAAGGTCGCCAACTTGAAGTTCCTCGAGGAGGAGCACGGTGTCACCGCC
GATATGGTCAACAGCCTTTTCGACTATGGTCGCTTCCAGTACAGCTGCGG
TAGTTACGGCAATGCCGCTGAGCTGCTGTACCAGTTCCGTGTCCTCTCCA
CCGACAACGACAAGGTTGCTTCCGCCACATGGGGTAAGCTCGCCTCGGAG
ATTCTGACCACCAGCTGGGATGGTGCTATGGAGGAAGTCCAGAAGGTCAA
GGACTCGATCGAGACCCGTCTCTTCAACAACCCTCTGGGTCAGCTCCAGA
ACCGCTCCTGGTTGATCCACTGGTCTCTCTTCCCCTTCTTCAACTACGAC
CCTGCTCGCGATGTCCTGACCGACCTTTTCTTCTCCCCCGCCTACATCAA
CACCATCCAGACTAGCTGCCCCTGGATCCTGCGCTACCTCGCCGCCGCCG
TCATCACCAACCGCAACCGTGCCCACAAGAACAGCAACGTCTACCAGAAG
CAGTTGAAGGACCTGATCCGCGTCGTTCGCCAGGAGGGCTACGAATACTC
CGACCCCATCACCGACTTCGTTAAGGCGCTGTACGTTGACTTCGACTTTG
AGGAGGCCCAGAAGAAGTTGGGTGAGGCCGAGGATGTGTTGCGGAGCGAC
TTCTTCCTCGTTTCGGCTGCCGATGCCTTCGTTGAGGCTGCCCGTCACCT
GATCTCCGAGAGCTACTGCAAGATCCACCAGCGGATCGACATCAAGTATG
TCAATCAACACGAAGAACATTCATTCACGCATTATCTTGCTAACCGATCA
CACCAGGGACCTGTCTACCCGTCTGGGTCTGAACCAGGATGAGGGTGAGA
AGTGGATCGTCAACCTGATCCGTGACACTCGTGTCGACGCCAAGATTGAC
TACAAGGAGGGCACTGTGATCATGAACCACCCCCCGCAGTCGGTGTACCA
GCAGGTCATTGAGAAGACCAAGGGTGCTTTCTTCCGCACGCAAGTTCTGA
GGTTCGTCCAATACCCTATCCTATCAATCCATCTCCATCCTTTGTTACTA
ACGCCAAAATGATCCAGTGCTGCCGTTGCGAAATAA back to topCoding sequence (CDS) from alignment at ch4:4483126..4484611+ >KJC3_006042-T1 ID=KJC3_006042-T1|Name=KJC3_006042-T1|organism=Aspergillus niger KJC3|type=CDS|length=4077bp|location=Sequence derived from alignment at ch4:4483126..4484611+ (Aspergillus niger KJC3)
ATGGCAGCCAACGTTCCTCCTTCCGCTGAGACCCTTCTCAGCGGTGCTGC
CGCCCACCCGCCCAAGACCGCTGAAGAGATCGCCAACCAGTATGACCTGC
TGCCCAAGCTGATCCCCTACCTCGACCGCCATCTGGTCTTCCCTCTTCTC
GAGTTCAGCTCCGGCTCCCAGGAAGATGACAAGGAGATGATCCGCGCCAA
GTACGAGCTGTTGAAGCACACCAACATGACCGACTATGTGGCCAACCTGT
GGAAGGAAATTAACGACTCCGACACCATCCCCGACGAGTTCGTCAAGAAG
AGAGAGGAGGTCCTCGCCAAGTTGCAACACTACCAGGAGCAGAGCGCCAA
GATCACCGAGCTGCTGCAGGATGAGGATGTCGTCGGCAACCTGCGCAGCG
ACAAGGTCGCCAACTTGAAGTTCCTCGAGGAGGAGCACGGTGTCACCGCC
GATATGGTCAACAGCCTTTTCGACTATGGTCGCTTCCAGTACAGCTGCGG
TAGTTACGGCAATGCCGCTGAGCTGCTGTACCAGTTCCGTGTCCTCTCCA
CCGACAACGACAAGGTTGCTTCCGCCACATGGGGTAAGCTCGCCTCGGAG
ATTCTGACCACCAGCTGGGATGGTGCTATGGAGGAAGTCCAGAAGGTCAA
GGACTCGATCGAGACCCGTCTCTTCAACAACCCTCTGGGTCAGCTCCAGA
ACCGCTCCTGGTTGATCCACTGGTCTCTCTTCCCCTTCTTCAACTACGAC
CCTGCTCGCGATGTCCTGACCGACCTTTTCTTCTCCCCCGCCTACATCAA
CACCATCCAGACTAGCTGCCCCTGGATCCTGCGCTACCTCGCCGCCGCCG
TCATCACCAACCGCAACCGTGCCCACAAGAACAGCAACGTCTACCAGAAG
CAGTTGAAGGACCTGATCCGCGTCGTTCGCCAGGAGGGCTACGAATACTC
CGACCCCATCACCGACTTCGTTAAGGCGCTGTACGTTGACTTCGACTTTG
AGGAGGCCCAGAAGAAGTTGGGTGAGGCCGAGGATGTGTTGCGGAGCGAC
TTCTTCCTCGTTTCGGCTGCCGATGCCTTCGTTGAGGCTGCCCGTCACCT
GATCTCCGAGAGCTACTGCAAGATCCACCAGCGGATCGACATCAAGGACC
TGTCTACCCGTCTGGGTCTGAACCAGGATGAGGGTGAGAAGTGGATCGTC
AACCTGATCCGTGACACTCGTGTCGACGCCAAGATTGACTACAAGGAGGG
CACTGTGATCATGAACCACCCCCCGCAGTCGGTGTACCAGCAGGTCATTG
AGAAGACCAAGGGTGCTTTCTTCCGCACGCAAGTTCTGAGTGCTGCCGTT
GCGAAATAAATGGCAGCCAACGTTCCTCCTTCCGCTGAGACCCTTCTCAG
CGGTGCTGCCGCCCACCCGCCCAAGACCGCTGAAGAGATCGCCAACCAGT
ATGACCTGCTGCCCAAGCTGATCCCCTACCTCGACCGCCATCTGGTCTTC
CCTCTTCTCGAGTTCAGCTCCGGCTCCCAGGAAGATGACAAGGAGATGAT
CCGCGCCAAGTACGAGCTGTTGAAGCACACCAACATGACCGACTATGTGG
CCAACCTGTGGAAGGAAATTAACGACTCCGACACCATCCCCGACGAGTTC
GTCAAGAAGAGAGAGGAGGTCCTCGCCAAGTTGCAACACTACCAGGAGCA
GAGCGCCAAGATCACCGAGCTGCTGCAGGATGAGGATGTCGTCGGCAACC
TGCGCAGCGACAAGGTCGCCAACTTGAAGTTCCTCGAGGAGGAGCACGGT
GTCACCGCCGATATGGTCAACAGCCTTTTCGACTATGGTCGCTTCCAGTA
CAGCTGCGGTAGTTACGGCAATGCCGCTGAGCTGCTGTACCAGTTCCGTG
TCCTCTCCACCGACAACGACAAGGTTGCTTCCGCCACATGGGGTAAGCTC
GCCTCGGAGATTCTGACCACCAGCTGGGATGGTGCTATGGAGGAAGTCCA
GAAGGTCAAGGACTCGATCGAGACCCGTCTCTTCAACAACCCTCTGGGTC
AGCTCCAGAACCGCTCCTGGTTGATCCACTGGTCTCTCTTCCCCTTCTTC
AACTACGACCCTGCTCGCGATGTCCTGACCGACCTTTTCTTCTCCCCCGC
CTACATCAACACCATCCAGACTAGCTGCCCCTGGATCCTGCGCTACCTCG
CCGCCGCCGTCATCACCAACCGCAACCGTGCCCACAAGAACAGCAACGTC
TACCAGAAGCAGTTGAAGGACCTGATCCGCGTCGTTCGCCAGGAGGGCTA
CGAATACTCCGACCCCATCACCGACTTCGTTAAGGCGCTGTACGTTGACT
TCGACTTTGAGGAGGCCCAGAAGAAGTTGGGTGAGGCCGAGGATGTGTTG
CGGAGCGACTTCTTCCTCGTTTCGGCTGCCGATGCCTTCGTTGAGGCTGC
CCGTCACCTGATCTCCGAGAGCTACTGCAAGATCCACCAGCGGATCGACA
TCAAGGACCTGTCTACCCGTCTGGGTCTGAACCAGGATGAGGGTGAGAAG
TGGATCGTCAACCTGATCCGTGACACTCGTGTCGACGCCAAGATTGACTA
CAAGGAGGGCACTGTGATCATGAACCACCCCCCGCAGTCGGTGTACCAGC
AGGTCATTGAGAAGACCAAGGGTGCTTTCTTCCGCACGCAAGTTCTGAGT
GCTGCCGTTGCGAAATAAATGGCAGCCAACGTTCCTCCTTCCGCTGAGAC
CCTTCTCAGCGGTGCTGCCGCCCACCCGCCCAAGACCGCTGAAGAGATCG
CCAACCAGTATGACCTGCTGCCCAAGCTGATCCCCTACCTCGACCGCCAT
CTGGTCTTCCCTCTTCTCGAGTTCAGCTCCGGCTCCCAGGAAGATGACAA
GGAGATGATCCGCGCCAAGTACGAGCTGTTGAAGCACACCAACATGACCG
ACTATGTGGCCAACCTGTGGAAGGAAATTAACGACTCCGACACCATCCCC
GACGAGTTCGTCAAGAAGAGAGAGGAGGTCCTCGCCAAGTTGCAACACTA
CCAGGAGCAGAGCGCCAAGATCACCGAGCTGCTGCAGGATGAGGATGTCG
TCGGCAACCTGCGCAGCGACAAGGTCGCCAACTTGAAGTTCCTCGAGGAG
GAGCACGGTGTCACCGCCGATATGGTCAACAGCCTTTTCGACTATGGTCG
CTTCCAGTACAGCTGCGGTAGTTACGGCAATGCCGCTGAGCTGCTGTACC
AGTTCCGTGTCCTCTCCACCGACAACGACAAGGTTGCTTCCGCCACATGG
GGTAAGCTCGCCTCGGAGATTCTGACCACCAGCTGGGATGGTGCTATGGA
GGAAGTCCAGAAGGTCAAGGACTCGATCGAGACCCGTCTCTTCAACAACC
CTCTGGGTCAGCTCCAGAACCGCTCCTGGTTGATCCACTGGTCTCTCTTC
CCCTTCTTCAACTACGACCCTGCTCGCGATGTCCTGACCGACCTTTTCTT
CTCCCCCGCCTACATCAACACCATCCAGACTAGCTGCCCCTGGATCCTGC
GCTACCTCGCCGCCGCCGTCATCACCAACCGCAACCGTGCCCACAAGAAC
AGCAACGTCTACCAGAAGCAGTTGAAGGACCTGATCCGCGTCGTTCGCCA
GGAGGGCTACGAATACTCCGACCCCATCACCGACTTCGTTAAGGCGCTGT
ACGTTGACTTCGACTTTGAGGAGGCCCAGAAGAAGTTGGGTGAGGCCGAG
GATGTGTTGCGGAGCGACTTCTTCCTCGTTTCGGCTGCCGATGCCTTCGT
TGAGGCTGCCCGTCACCTGATCTCCGAGAGCTACTGCAAGATCCACCAGC
GGATCGACATCAAGGACCTGTCTACCCGTCTGGGTCTGAACCAGGATGAG
GGTGAGAAGTGGATCGTCAACCTGATCCGTGACACTCGTGTCGACGCCAA
GATTGACTACAAGGAGGGCACTGTGATCATGAACCACCCCCCGCAGTCGG
TGTACCAGCAGGTCATTGAGAAGACCAAGGGTGCTTTCTTCCGCACGCAA
GTTCTGAGTGCTGCCGTTGCGAAATAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005737 | cytoplasm |
| GO:0005852 | eukaryotic translation initiation factor 3 complex |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003743 | translation initiation factor activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036390 |
| DBxref | InterPro:IPR016650 |
| DBxref | InterPro:IPR019010 |
| DBxref | InterPro:IPR000717 |
| DBxref | PFAM:PF01399 |
| DBxref | PFAM:PF09440 |
| Product | eukaryotic translation initiation factor 3 subunit E |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:4483126..4484611 + |
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