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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:4497643..4501413+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006047-T1 ID=KJC3_006047-T1|Name=KJC3_006047-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3771bp|location=Sequence derived from alignment at ch4:4497643..4501413+ (Aspergillus niger KJC3)
CAACATTCATCCCATACGCGGGTCTACCAGTCCTTCGGCGATGGGCTCCG
ACGCAATTGATACCTAAACACGTCAAGTCTATATGCCATAGCTACTACTC
CCAGGTCTTCCTCTGACTGGTGCGGGACACCATGCCCTAGACTCCGCGAC
TCCAGCGAATTGGCAGGCTATCCACTTGTGTTCGACCATTAACTTCTCGC
CGCGTCTAACCTCGAAAGGCGGTATTCTGCGCCAGCCGACCTATACCCCA
TTGCCTCTTCAGGGGCCTCAAGTTGTGAATTACACAAGCATACTTGGAAT
CCAGAGAATAAAAAGAAAGGACGTTATACAATACACGAGAGCCCTATAGT
CGAGCTATAACCAGATTCCCCCAAAAGCATGTCCACCCGCCAACCCGCGC
GCCCGCGGCGCATCGACGACGCCCTCTCGCAGCTCGTCGACTCCCTTACC
CCTCCGCTCTCATTCTCCGACATCGACGACGGCTACTCCGACGACGCAGA
AGAAGCCCTCGCGGCAGCCGAGGAGCGACGACACCAAGATATCCTCGAGC
GGTCATGGCGCATCCTGGACACCTACACGAGCGCCGCCAACAATGATCCG
GCCTCGCCGCCGGGCCCCGGAATAAACAGACGAGGAAGCTTAGCAGGCGG
AGAGAACATCAACAACGCGTCGGACCTGATTAAGCGGAAATTACTGCGCG
AGAATGCGAGCCCCGATAAGGCGGTGCGGTTCTCGAATCTTTACTCGCGT
CTGTTGACGCAGCCGGTGCTGTCGCAGAAATGGGCCATCCTGTACTTACT
TTATCGACTCTCCGGGGCGGATGATTATGATGGGTTTGTTATGGATGACG
AGGTGATGGTGGAGGCGAGGAGTCCGCCGGTCGAGCCGGCGAATTTGCAG
AATGTGCTTTGGAAGGGCCAGAGGACGAAACAACAGGGTTGGGGTGCTGG
TGATCAGTCGGATGAGGAGGGTCCGGCGATTAGTTCGTCGGCGTCTCAGT
TGCCTGGGAGGATTGAGAGAAAGGCTTCGGTGCGACGGCAGGAATTGTTT
GCGGATAAGGAACGAGAACCGGAGCTTGATGGGGGGTTACAGACGACGGA
GAGGGCTCGAGAGACTCGGGTTACTCGTAGTCGGGCGAATACTGGGGTTA
GAGAACCGTTTAGTGATGATCAGAAGACGGTAATGCCGGATCCTGGTCCG
GAGAAGGAGCAGAAGCCTACGGGGCCGTTGGAAGATGGGCTTCTTCGTGA
TTTACCGTTCAATTTGCAGGGGCTGTCGTCCTCCAATTTGCAATTCTCCT
CCTCGTCTATCTTGAAATTACCGCCGTCACTTCCTTTGCCTGTCGTTTCG
CTTCTGAATTCACTTGCAGAGCCCTGCCTTCTATATCGTGGGTTGTCGTC
CTTTGTCGAGAGCTCTGGCGGTGGCCTTTTGAGCCAGAGCTTGCGGGCAG
CTCTCTCGAATGAACTCCGCTCGTATCTGGGCTTAGTTGCTACGTTGGAA
GGGGAGATTCGGCGGGCGTTGGCTGCGCCTGCAGATCCGAATGATCCTCG
GAGTGCCGCTAAGAGTGGTGTGACGTTGAAGCGATGTGTTGTCTGGACGC
GAGATGCAACGATGGCGCTGCGGTTGATGAGTCTTATTGTTGAGGAAGCT
CAGAGTATGTGCTCCAATTGTGAATGGGCAGTTATTCAAGCTAACGTTGG
TATTACAGACAAGAAAGGTGGTCAACTGATCTCTCTAATTCATGGCTTCT
CGACGTCTCATGGCGACCCCTTCGTATGCTCTCTGGCAGAGAAGCTTCTC
AACCATGTCACCCGGCCCTTCTACGATATGCTACGGCTTTGGATTTACGA
TGGCGAGCTGTCCGACCCCTACAAAGAATTCTTCGTTGTCGAGCCAGAGT
TCAGGCCCAGCACAGACCCACGTCGCATTGCAACCAGTGTTTGGGAGGAT
AAGTATAAGCTTGACGATGAGATGGTACCTTCCATAATCACACAAGACTT
TGCTAAGAAGGTATTCCTGATCGGAAAATCACTGAACTTCATACGATATG
GCTGTGGAGACTCGGGGTGGGTCGAAGCCTACTCGAAGGAAGCGTCCAAG
GAGCTGCGGTATGGCGATACGGCTACCCTAGAGTCTTCGATTGATGAAGC
CTATAAGACTACGATGGCGCGACTGATCTACCTTATGGACGACAAGTTCA
AACTATTCGACCATCTTCGAGCGCTGAAGAAATACCTATTGCTCGGACAG
GGTGATTTCATCGCCTTGCTGATGGAGTCATTAGCGTCCAACCTCGACCG
GCCAGCTAATTCACAGTACCGGCACACACTGACTGCCCAGTTGGAGCACG
CCATTCGAGCATCAAACGCACAATACGACTCCCCAGATGTCCTCCGTCGG
CTGGATGCCCGCATGCTAGAGCTCAGCCATGGAGAGATTGGCTGGGACTG
CTTCACCCTGGAATACAAAATCGACGCCCCAGTAGACGTGGTCATCACAC
CCTGGGGCTCCACTCAATACCTAAAAGTCTTCAATTTCCTCTGGCGAGTG
AAACGAGTCGAATTCGCCCTTGGCAGCACCTGGCGACGATGCATGACGGG
GGCCCGCGGCGTCCTAGGAAGCGTCAACGACAAAGTCGGCTCCGACTGGA
AACGAGCAAGATGCGTAATCGCCGAGATGATCCACTTCGTGTGCCAACTG
CAATACTACATCCTATTCGAAGTGATCGAAGCAAGCTGGGACCAACTACA
AGCCTCCATCTCCAAGCCCGGCTGCACCCTAGACGACCTAATCGAAGCCC
ACACCAAATACCTCAACTCCATCACCCACAAAGGCCTCCTGGGCTCCTCC
ACCTCCTTCAAAAACAACACCTCCTCTTCCTCCTCAACCAACTCGAAACC
CCAACCAGAAGAAGGCTTCCTCACCCAACTCCATCAAATCCTCAAAATCA
TGCTCGCCTACAAAGACGCCGTTGACGGCCTTTACTCCTTCTCCGTCGCT
GAATTCACCCGCAGACAGGAACTCAGCGCCAAAATAGAAACCCGCACCGC
CCAGGGCCGCTGGGGCCTCACGGACCGTGACCTCCGTCGTCCCCTTCGAG
GCCATAAGGACTCTGTCTCCTCCTCTATGTCCCCCTCCGTTGCTGCTTAC
ACGCCCAACAACCTCGCCGGTGGTGGCGCCGATGACTTCGGTGGCATCGG
CACCCCATCGTCCCTCAACCCCAATGACCTCTCTGCGGACGATCATATGC
TTGCTTCCCTGCGTGTCCGGCTCCGCGACCTCTCCGCGGAGTTCCGCTCC
CGTCTCAATGTCCTCCTAGGTGATCTTGCTTACCAGCCTGATGTGGATAT
GCGGTTCCTGGGCGTTGTTATGAACTTCAATGATGTGTATGAACCCGTGA
GGAGACGAAGGACTGCGGGATCTAGTTCCCGTGATAAGGAAAGAGCGAGA
CGTAAGGCGGCCGCTGTTGCCGCTGCGAATGCGAATGCTGCTGCTGAGGG
TAATGCGTCGTCGTCTAAGGAGGCGAGGAGAGAGAAAGAGAGGGAGAAAG
CGGAAAATAGCGGGACTGGAAGCGCTACTGGGTAGTAAGTTGTAGATGTT
TGCTGTGACATTTTGAAGCTGTATATCTATCTCCCTCGAGGAGAGTTTTT
GGTCTGTCTGAGTGTCTGTTTCGTACAAGTTCATGGAGTCAAGGATGCGG
TGGCATAGGCTGGGCTGGATGGGAATTGAAGCGAAGTGATAAATTCAAAA
ATCAGAAGAATGTATAATGAG back to topCoding sequence (CDS) from alignment at ch4:4497643..4501413+ >KJC3_006047-T1 ID=KJC3_006047-T1|Name=KJC3_006047-T1|organism=Aspergillus niger KJC3|type=CDS|length=6306bp|location=Sequence derived from alignment at ch4:4497643..4501413+ (Aspergillus niger KJC3)
ATGTCCACCCGCCAACCCGCGCGCCCGCGGCGCATCGACGACGCCCTCTC
GCAGCTCGTCGACTCCCTTACCCCTCCGCTCTCATTCTCCGACATCGACG
ACGGCTACTCCGACGACGCAGAAGAAGCCCTCGCGGCAGCCGAGGAGCGA
CGACACCAAGATATCCTCGAGCGGTCATGGCGCATCCTGGACACCTACAC
GAGCGCCGCCAACAATGATCCGGCCTCGCCGCCGGGCCCCGGAATAAACA
GACGAGGAAGCTTAGCAGGCGGAGAGAACATCAACAACGCGTCGGACCTG
ATTAAGCGGAAATTACTGCGCGAGAATGCGAGCCCCGATAAGGCGGTGCG
GTTCTCGAATCTTTACTCGCGTCTGTTGACGCAGCCGGTGCTGTCGCAGA
AATGGGCCATCCTGTACTTACTTTATCGACTCTCCGGGGCGGATGATTAT
GATGGGTTTGTTATGGATGACGAGGTGATGGTGGAGGCGAGGAGTCCGCC
GGTCGAGCCGGCGAATTTGCAGAATGTGCTTTGGAAGGGCCAGAGGACGA
AACAACAGGGTTGGGGTGCTGGTGATCAGTCGGATGAGGAGGGTCCGGCG
ATTAGTTCGTCGGCGTCTCAGTTGCCTGGGAGGATTGAGAGAAAGGCTTC
GGTGCGACGGCAGGAATTGTTTGCGGATAAGGAACGAGAACCGGAGCTTG
ATGGGGGGTTACAGACGACGGAGAGGGCTCGAGAGACTCGGGTTACTCGT
AGTCGGGCGAATACTGGGGTTAGAGAACCGTTTAGTGATGATCAGAAGAC
GGTAATGCCGGATCCTGGTCCGGAGAAGGAGCAGAAGCCTACGGGGCCGT
TGGAAGATGGGCTTCTTCGTGATTTACCGTTCAATTTGCAGGGGCTGTCG
TCCTCCAATTTGCAATTCTCCTCCTCGTCTATCTTGAAATTACCGCCGTC
ACTTCCTTTGCCTGTCGTTTCGCTTCTGAATTCACTTGCAGAGCCCTGCC
TTCTATATCGTGGGTTGTCGTCCTTTGTCGAGAGCTCTGGCGGTGGCCTT
TTGAGCCAGAGCTTGCGGGCAGCTCTCTCGAATGAACTCCGCTCGTATCT
GGGCTTAGTTGCTACGTTGGAAGGGGAGATTCGGCGGGCGTTGGCTGCGC
CTGCAGATCCGAATGATCCTCGGAGTGCCGCTAAGAGTGGTGTGACGTTG
AAGCGATGTGTTGTCTGGACGCGAGATGCAACGATGGCGCTGCGGTTGAT
GAGTCTTATTGTTGAGGAAGCTCAGAACAAGAAAGGTGGTCAACTGATCT
CTCTAATTCATGGCTTCTCGACGTCTCATGGCGACCCCTTCGTATGCTCT
CTGGCAGAGAAGCTTCTCAACCATGTCACCCGGCCCTTCTACGATATGCT
ACGGCTTTGGATTTACGATGGCGAGCTGTCCGACCCCTACAAAGAATTCT
TCGTTGTCGAGCCAGAGTTCAGGCCCAGCACAGACCCACGTCGCATTGCA
ACCAGTGTTTGGGAGGATAAGTATAAGCTTGACGATGAGATGGTACCTTC
CATAATCACACAAGACTTTGCTAAGAAGGTATTCCTGATCGGAAAATCAC
TGAACTTCATACGATATGGCTGTGGAGACTCGGGGTGGGTCGAAGCCTAC
TCGAAGGAAGCGTCCAAGGAGCTGCGGTATGGCGATACGGCTACCCTAGA
GTCTTCGATTGATGAAGCCTATAAGACTACGATGGCGCGACTGATCTACC
TTATGGACGACAAGTTCAAACTATTCGACCATCTTCGAGCGCTGAAGAAA
TACCTATTGCTCGGACAGGGTGATTTCATCGCCTTGCTGATGGAGTCATT
AGCGTCCAACCTCGACCGGCCAGCTAATTCACAGTACCGGCACACACTGA
CTGCCCAGTTGGAGCACGCCATTCGAGCATCAAACGCACAATACGACTCC
CCAGATGTCCTCCGTCGGCTGGATGCCCGCATGCTAGAGCTCAGCCATGG
AGAGATTGGCTGGGACTGCTTCACCCTGGAATACAAAATCGACGCCCCAG
TAGACGTGGTCATCACACCCTGGGGCTCCACTCAATACCTAAAAGTCTTC
AATTTCCTCTGGCGAGTGAAACGAGTCGAATTCGCCCTTGGCAGCACCTG
GCGACGATGCATGACGGGGGCCCGCGGCGTCCTAGGAAGCGTCAACGACA
AAGTCGGCTCCGACTGGAAACGAGCAAGATGCGTAATCGCCGAGATGATC
CACTTCGTGTGCCAACTGCAATACTACATCCTATTCGAAGTGATCGAAGC
AAGCTGGGACCAACTACAAGCCTCCATCTCCAAGCCCGGCTGCACCCTAG
ACGACCTAATCGAAGCCCACACCAAATACCTCAACTCCATCACCCACAAA
GGCCTCCTGGGCTCCTCCACCTCCTTCAAAAACAACACCTCCTCTTCCTC
CTCAACCAACTCGAAACCCCAACCAGAAGAAGGCTTCCTCACCCAACTCC
ATCAAATCCTCAAAATCATGCTCGCCTACAAAGACGCCGTTGACGGCCTT
TACTCCTTCTCCGTCGCTGAATTCACCCGCAGACAGGAACTCAGCGCCAA
AATAGAAACCCGCACCGCCCAGGGCCGCTGGGGCCTCACGGACCGTGACC
TCCGTCGTCCCCTTCGAGGCCATAAGGACTCTGTCTCCTCCTCTATGTCC
CCCTCCGTTGCTGCTTACACGCCCAACAACCTCGCCGGTGGTGGCGCCGA
TGACTTCGGTGGCATCGGCACCCCATCGTCCCTCAACCCCAATGACCTCT
CTGCGGACGATCATATGCTTGCTTCCCTGCGTGTCCGGCTCCGCGACCTC
TCCGCGGAGTTCCGCTCCCGTCTCAATGTCCTCCTAGGTGATCTTGCTTA
CCAGCCTGATGTGGATATGCGGTTCCTGGGCGTTGTTATGAACTTCAATG
ATGTGTATGAACCCGTGAGGAGACGAAGGACTGCGGGATCTAGTTCCCGT
GATAAGGAAAGAGCGAGACGTAAGGCGGCCGCTGTTGCCGCTGCGAATGC
GAATGCTGCTGCTGAGGGTAATGCGTCGTCGTCTAAGGAGGCGAGGAGAG
AGAAAGAGAGGGAGAAAGCGGAAAATAGCGGGACTGGAAGCGCTACTGGG
TAGATGTCCACCCGCCAACCCGCGCGCCCGCGGCGCATCGACGACGCCCT
CTCGCAGCTCGTCGACTCCCTTACCCCTCCGCTCTCATTCTCCGACATCG
ACGACGGCTACTCCGACGACGCAGAAGAAGCCCTCGCGGCAGCCGAGGAG
CGACGACACCAAGATATCCTCGAGCGGTCATGGCGCATCCTGGACACCTA
CACGAGCGCCGCCAACAATGATCCGGCCTCGCCGCCGGGCCCCGGAATAA
ACAGACGAGGAAGCTTAGCAGGCGGAGAGAACATCAACAACGCGTCGGAC
CTGATTAAGCGGAAATTACTGCGCGAGAATGCGAGCCCCGATAAGGCGGT
GCGGTTCTCGAATCTTTACTCGCGTCTGTTGACGCAGCCGGTGCTGTCGC
AGAAATGGGCCATCCTGTACTTACTTTATCGACTCTCCGGGGCGGATGAT
TATGATGGGTTTGTTATGGATGACGAGGTGATGGTGGAGGCGAGGAGTCC
GCCGGTCGAGCCGGCGAATTTGCAGAATGTGCTTTGGAAGGGCCAGAGGA
CGAAACAACAGGGTTGGGGTGCTGGTGATCAGTCGGATGAGGAGGGTCCG
GCGATTAGTTCGTCGGCGTCTCAGTTGCCTGGGAGGATTGAGAGAAAGGC
TTCGGTGCGACGGCAGGAATTGTTTGCGGATAAGGAACGAGAACCGGAGC
TTGATGGGGGGTTACAGACGACGGAGAGGGCTCGAGAGACTCGGGTTACT
CGTAGTCGGGCGAATACTGGGGTTAGAGAACCGTTTAGTGATGATCAGAA
GACGGTAATGCCGGATCCTGGTCCGGAGAAGGAGCAGAAGCCTACGGGGC
CGTTGGAAGATGGGCTTCTTCGTGATTTACCGTTCAATTTGCAGGGGCTG
TCGTCCTCCAATTTGCAATTCTCCTCCTCGTCTATCTTGAAATTACCGCC
GTCACTTCCTTTGCCTGTCGTTTCGCTTCTGAATTCACTTGCAGAGCCCT
GCCTTCTATATCGTGGGTTGTCGTCCTTTGTCGAGAGCTCTGGCGGTGGC
CTTTTGAGCCAGAGCTTGCGGGCAGCTCTCTCGAATGAACTCCGCTCGTA
TCTGGGCTTAGTTGCTACGTTGGAAGGGGAGATTCGGCGGGCGTTGGCTG
CGCCTGCAGATCCGAATGATCCTCGGAGTGCCGCTAAGAGTGGTGTGACG
TTGAAGCGATGTGTTGTCTGGACGCGAGATGCAACGATGGCGCTGCGGTT
GATGAGTCTTATTGTTGAGGAAGCTCAGAACAAGAAAGGTGGTCAACTGA
TCTCTCTAATTCATGGCTTCTCGACGTCTCATGGCGACCCCTTCGTATGC
TCTCTGGCAGAGAAGCTTCTCAACCATGTCACCCGGCCCTTCTACGATAT
GCTACGGCTTTGGATTTACGATGGCGAGCTGTCCGACCCCTACAAAGAAT
TCTTCGTTGTCGAGCCAGAGTTCAGGCCCAGCACAGACCCACGTCGCATT
GCAACCAGTGTTTGGGAGGATAAGTATAAGCTTGACGATGAGATGGTACC
TTCCATAATCACACAAGACTTTGCTAAGAAGGTATTCCTGATCGGAAAAT
CACTGAACTTCATACGATATGGCTGTGGAGACTCGGGGTGGGTCGAAGCC
TACTCGAAGGAAGCGTCCAAGGAGCTGCGGTATGGCGATACGGCTACCCT
AGAGTCTTCGATTGATGAAGCCTATAAGACTACGATGGCGCGACTGATCT
ACCTTATGGACGACAAGTTCAAACTATTCGACCATCTTCGAGCGCTGAAG
AAATACCTATTGCTCGGACAGGGTGATTTCATCGCCTTGCTGATGGAGTC
ATTAGCGTCCAACCTCGACCGGCCAGCTAATTCACAGTACCGGCACACAC
TGACTGCCCAGTTGGAGCACGCCATTCGAGCATCAAACGCACAATACGAC
TCCCCAGATGTCCTCCGTCGGCTGGATGCCCGCATGCTAGAGCTCAGCCA
TGGAGAGATTGGCTGGGACTGCTTCACCCTGGAATACAAAATCGACGCCC
CAGTAGACGTGGTCATCACACCCTGGGGCTCCACTCAATACCTAAAAGTC
TTCAATTTCCTCTGGCGAGTGAAACGAGTCGAATTCGCCCTTGGCAGCAC
CTGGCGACGATGCATGACGGGGGCCCGCGGCGTCCTAGGAAGCGTCAACG
ACAAAGTCGGCTCCGACTGGAAACGAGCAAGATGCGTAATCGCCGAGATG
ATCCACTTCGTGTGCCAACTGCAATACTACATCCTATTCGAAGTGATCGA
AGCAAGCTGGGACCAACTACAAGCCTCCATCTCCAAGCCCGGCTGCACCC
TAGACGACCTAATCGAAGCCCACACCAAATACCTCAACTCCATCACCCAC
AAAGGCCTCCTGGGCTCCTCCACCTCCTTCAAAAACAACACCTCCTCTTC
CTCCTCAACCAACTCGAAACCCCAACCAGAAGAAGGCTTCCTCACCCAAC
TCCATCAAATCCTCAAAATCATGCTCGCCTACAAAGACGCCGTTGACGGC
CTTTACTCCTTCTCCGTCGCTGAATTCACCCGCAGACAGGAACTCAGCGC
CAAAATAGAAACCCGCACCGCCCAGGGCCGCTGGGGCCTCACGGACCGTG
ACCTCCGTCGTCCCCTTCGAGGCCATAAGGACTCTGTCTCCTCCTCTATG
TCCCCCTCCGTTGCTGCTTACACGCCCAACAACCTCGCCGGTGGTGGCGC
CGATGACTTCGGTGGCATCGGCACCCCATCGTCCCTCAACCCCAATGACC
TCTCTGCGGACGATCATATGCTTGCTTCCCTGCGTGTCCGGCTCCGCGAC
CTCTCCGCGGAGTTCCGCTCCCGTCTCAATGTCCTCCTAGGTGATCTTGC
TTACCAGCCTGATGTGGATATGCGGTTCCTGGGCGTTGTTATGAACTTCA
ATGATGTGTATGAACCCGTGAGGAGACGAAGGACTGCGGGATCTAGTTCC
CGTGATAAGGAAAGAGCGAGACGTAAGGCGGCCGCTGTTGCCGCTGCGAA
TGCGAATGCTGCTGCTGAGGGTAATGCGTCGTCGTCTAAGGAGGCGAGGA
GAGAGAAAGAGAGGGAGAAAGCGGAAAATAGCGGGACTGGAAGCGCTACT
GGGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0043015 | gamma-tubulin binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006047-T1.utr5p1 | KJC3_006047-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006047-T1.utr3p1 | KJC3_006047-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR042241 |
| DBxref | InterPro:IPR041470 |
| DBxref | InterPro:IPR040457 |
| DBxref | PFAM:PF17681 |
| DBxref | PFAM:PF04130 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:4497643..4501413 + |
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