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KJC3_006073-T1, KJC3_006073-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006073-T1
Unique NameKJC3_006073-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:4592365..4594067+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006073-T1 ID=KJC3_006073-T1|Name=KJC3_006073-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1703bp|location=Sequence derived from alignment at ch4:4592365..4594067+ (Aspergillus niger KJC3)
CTTCATCCAGTTTCCACCCCAATCATGGCGCCCTCCAGCTCTCCAGAACC
TGTTGTGGACGAATCCCACGAGTCCTCTGACTCGGAGGTCGAGCAGACCG
AACTGCAATCCCGCGCCCCCAAGAGAAGACGTCTCTCGGAGTCTTCCACC
GACTCCTACGTTGCTCCGGCGCCGCTCCCCACACTCTCCCGCATCAAGAA
GAAGGGCGCAGATGAAGAGAATAAGCCCGCCACATCGGATAAAGACGAGC
CTGTCCTGATCAAGGATGCTCTGGAGATTGGTCTCAATGATGCGCAGAAC
TCATTCGCCTCTCTCAACGTGGCGCCGTGGTTGATCGGCTCCCTAACCAC
CATGGCTGTTCGCAAACCAACCGCCATTCAAAAAGCGTGTATTCCTGAGA
TCCTAAACGGCCGGGACTGCATTGGTGGAAGCCGGACTGGTTCCGGTAAG
ACCATTGCCTTCTCAGTGCCCATGCTGCAGAAATGGGCGGAGGATCCATT
CGGTATCTTCGGCCTTGTCCTCACTCCAACTCGGTAAGAACCTATCCCCC
ACTCCCAATGCCCATCATTCATCATCTAATCCGATGTGCCTAGTGAACTT
GCCCTCCAAATCTACGAACAAATCAAAGCCATCTCCGCCCCCCAAAGCAT
GAAACCCCTCCTCATCACCGGCGGCACCGACATGCGCCCACAAGCCGTGG
CCCTCGCACAACGCCCACACGTCGTGATCGCCACGCCCGGCCGTCTCGCC
GACCACATCAACACCTCCGGCTCCGACACCATCCGCGGCCTGAAGCGCGT
CCGCATGGTCGTTCTCGACGAAGCAGACCGGCTCCTCGCCCCAGGACACG
GCAGCATGCTCCCGGACGTGGAAACCTGCCTCTCAGCTCTCCCACCCTCC
AGCGAGCGCCAAACCCTCCTCTTCACAGCAACCCTAACACCGGAAGTGCG
CGCGCTGAAATCCATGCCCCGGCCGTCCACCAAACCCCCCCTCTTCGTCA
CCGAAATCTCCACCGAAAACAACGCCTCTATCCCCCCGACCCTTAAACAA
ACCTACCTCAAAGTCCCCATGACCCACCGCGAAGCCTTCCTCCACGTCCT
CCTCTCCACGGAAGCGAACGCCTCCAAACCAGCCATCATCTTCTGCAACC
ACACCAAGACGGCGGACTTGCTGGAGCGCATGCTCCGCAGGCTGTCTCAC
CGCGTTACATCCCTGCATAGTCTGCTGCCGCAGTCGGAGCGCAATGCCAA
TCTGGCGAGGTTCAGAGCGTCCGCGGCGAGGTTGCTCGTTGCGACGGATG
TGGCGTCCCGTGGTTTGGATATTCCGTCGGTGGAGTTGGTGGTCAATTTT
GATGTGCCCAGGAATCCGGATGATTATGTGCATCGGGTTGGTCGAACGGC
GCGTGCAGGGAGAAAGGGTGAGTCGGTCACGCTTGTTGGGCAACGGGATG
TGAGTCTGGTGTTGGCGATTGAGGAGAGGGTGGGTAGGCAGATGGAGGAG
TGGAGTGAGGAGGGTGTTAGTGTTGAGGGTAGGGTTGTTAGGACGGGTGT
GTTGAAGGAGGTTGGTGAGGCCAAGAGAGAGGCTGCGGGTGAGATTGAGG
AGGGGAGAGATGTGTTGGGAAGGAAGAGGAATAAGTTGAAGAAGGTGCGG
TAGTTTAAGTTACTTACTACTATGCACATAGAAGTTGTTTGTATATAATG
TCG
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Coding sequence (CDS) from alignment at ch4:4592365..4594067+

>KJC3_006073-T1 ID=KJC3_006073-T1|Name=KJC3_006073-T1|organism=Aspergillus niger KJC3|type=CDS|length=3138bp|location=Sequence derived from alignment at ch4:4592365..4594067+ (Aspergillus niger KJC3)
ATGGCGCCCTCCAGCTCTCCAGAACCTGTTGTGGACGAATCCCACGAGTC
CTCTGACTCGGAGGTCGAGCAGACCGAACTGCAATCCCGCGCCCCCAAGA
GAAGACGTCTCTCGGAGTCTTCCACCGACTCCTACGTTGCTCCGGCGCCG
CTCCCCACACTCTCCCGCATCAAGAAGAAGGGCGCAGATGAAGAGAATAA
GCCCGCCACATCGGATAAAGACGAGCCTGTCCTGATCAAGGATGCTCTGG
AGATTGGTCTCAATGATGCGCAGAACTCATTCGCCTCTCTCAACGTGGCG
CCGTGGTTGATCGGCTCCCTAACCACCATGGCTGTTCGCAAACCAACCGC
CATTCAAAAAGCGTGTATTCCTGAGATCCTAAACGGCCGGGACTGCATTG
GTGGAAGCCGGACTGGTTCCGGTAAGACCATTGCCTTCTCAGTGCCCATG
CTGCAGAAATGGGCGGAGGATCCATTCGGTATCTTCGGCCTTGTCCTCAC
TCCAACTCGTGAACTTGCCCTCCAAATCTACGAACAAATCAAAGCCATCT
CCGCCCCCCAAAGCATGAAACCCCTCCTCATCACCGGCGGCACCGACATG
CGCCCACAAGCCGTGGCCCTCGCACAACGCCCACACGTCGTGATCGCCAC
GCCCGGCCGTCTCGCCGACCACATCAACACCTCCGGCTCCGACACCATCC
GCGGCCTGAAGCGCGTCCGCATGGTCGTTCTCGACGAAGCAGACCGGCTC
CTCGCCCCAGGACACGGCAGCATGCTCCCGGACGTGGAAACCTGCCTCTC
AGCTCTCCCACCCTCCAGCGAGCGCCAAACCCTCCTCTTCACAGCAACCC
TAACACCGGAAGTGCGCGCGCTGAAATCCATGCCCCGGCCGTCCACCAAA
CCCCCCCTCTTCGTCACCGAAATCTCCACCGAAAACAACGCCTCTATCCC
CCCGACCCTTAAACAAACCTACCTCAAAGTCCCCATGACCCACCGCGAAG
CCTTCCTCCACGTCCTCCTCTCCACGGAAGCGAACGCCTCCAAACCAGCC
ATCATCTTCTGCAACCACACCAAGACGGCGGACTTGCTGGAGCGCATGCT
CCGCAGGCTGTCTCACCGCGTTACATCCCTGCATAGTCTGCTGCCGCAGT
CGGAGCGCAATGCCAATCTGGCGAGGTTCAGAGCGTCCGCGGCGAGGTTG
CTCGTTGCGACGGATGTGGCGTCCCGTGGTTTGGATATTCCGTCGGTGGA
GTTGGTGGTCAATTTTGATGTGCCCAGGAATCCGGATGATTATGTGCATC
GGGTTGGTCGAACGGCGCGTGCAGGGAGAAAGGGTGAGTCGGTCACGCTT
GTTGGGCAACGGGATGTGAGTCTGGTGTTGGCGATTGAGGAGAGGGTGGG
TAGGCAGATGGAGGAGTGGAGTGAGGAGGGTGTTAGTGTTGAGGGTAGGG
TTGTTAGGACGGGTGTGTTGAAGGAGGTTGGTGAGGCCAAGAGAGAGGCT
GCGGGTGAGATTGAGGAGGGGAGAGATGTGTTGGGAAGGAAGAGGAATAA
GTTGAAGAAGGTGCGGTAGATGGCGCCCTCCAGCTCTCCAGAACCTGTTG
TGGACGAATCCCACGAGTCCTCTGACTCGGAGGTCGAGCAGACCGAACTG
CAATCCCGCGCCCCCAAGAGAAGACGTCTCTCGGAGTCTTCCACCGACTC
CTACGTTGCTCCGGCGCCGCTCCCCACACTCTCCCGCATCAAGAAGAAGG
GCGCAGATGAAGAGAATAAGCCCGCCACATCGGATAAAGACGAGCCTGTC
CTGATCAAGGATGCTCTGGAGATTGGTCTCAATGATGCGCAGAACTCATT
CGCCTCTCTCAACGTGGCGCCGTGGTTGATCGGCTCCCTAACCACCATGG
CTGTTCGCAAACCAACCGCCATTCAAAAAGCGTGTATTCCTGAGATCCTA
AACGGCCGGGACTGCATTGGTGGAAGCCGGACTGGTTCCGGTAAGACCAT
TGCCTTCTCAGTGCCCATGCTGCAGAAATGGGCGGAGGATCCATTCGGTA
TCTTCGGCCTTGTCCTCACTCCAACTCGTGAACTTGCCCTCCAAATCTAC
GAACAAATCAAAGCCATCTCCGCCCCCCAAAGCATGAAACCCCTCCTCAT
CACCGGCGGCACCGACATGCGCCCACAAGCCGTGGCCCTCGCACAACGCC
CACACGTCGTGATCGCCACGCCCGGCCGTCTCGCCGACCACATCAACACC
TCCGGCTCCGACACCATCCGCGGCCTGAAGCGCGTCCGCATGGTCGTTCT
CGACGAAGCAGACCGGCTCCTCGCCCCAGGACACGGCAGCATGCTCCCGG
ACGTGGAAACCTGCCTCTCAGCTCTCCCACCCTCCAGCGAGCGCCAAACC
CTCCTCTTCACAGCAACCCTAACACCGGAAGTGCGCGCGCTGAAATCCAT
GCCCCGGCCGTCCACCAAACCCCCCCTCTTCGTCACCGAAATCTCCACCG
AAAACAACGCCTCTATCCCCCCGACCCTTAAACAAACCTACCTCAAAGTC
CCCATGACCCACCGCGAAGCCTTCCTCCACGTCCTCCTCTCCACGGAAGC
GAACGCCTCCAAACCAGCCATCATCTTCTGCAACCACACCAAGACGGCGG
ACTTGCTGGAGCGCATGCTCCGCAGGCTGTCTCACCGCGTTACATCCCTG
CATAGTCTGCTGCCGCAGTCGGAGCGCAATGCCAATCTGGCGAGGTTCAG
AGCGTCCGCGGCGAGGTTGCTCGTTGCGACGGATGTGGCGTCCCGTGGTT
TGGATATTCCGTCGGTGGAGTTGGTGGTCAATTTTGATGTGCCCAGGAAT
CCGGATGATTATGTGCATCGGGTTGGTCGAACGGCGCGTGCAGGGAGAAA
GGGTGAGTCGGTCACGCTTGTTGGGCAACGGGATGTGAGTCTGGTGTTGG
CGATTGAGGAGAGGGTGGGTAGGCAGATGGAGGAGTGGAGTGAGGAGGGT
GTTAGTGTTGAGGGTAGGGTTGTTAGGACGGGTGTGTTGAAGGAGGTTGG
TGAGGCCAAGAGAGAGGCTGCGGGTGAGATTGAGGAGGGGAGAGATGTGT
TGGGAAGGAAGAGGAATAAGTTGAAGAAGGTGCGGTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
DBP8KJC3_006073Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006073-T1.utr5p1KJC3_006073-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006073-T1.exon1KJC3_006073-T1.exon1Aspergillus niger KJC3exon
KJC3_006073-T1.exon2KJC3_006073-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006073-T1.cdsKJC3_006073-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006073-T1.utr3p1KJC3_006073-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006073-T1KJC3_006073-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR014014
DBxrefInterPro:IPR000629
DBxrefInterPro:IPR011545
DBxrefInterPro:IPR001650
DBxrefInterPro:IPR014001
DBxrefPFAM:PF00271
DBxrefPFAM:PF00270
ProductPutative RNA helicase
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:4592365..4594067 +
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