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KJC3_006088-T1, KJC3_006088-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006088-T1
Unique NameKJC3_006088-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:4641939..4643336-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006088-T1 ID=KJC3_006088-T1|Name=KJC3_006088-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1398bp|location=Sequence derived from alignment at ch4:4641939..4643336- (Aspergillus niger KJC3)
GAAAAAGTAAGTAGCTTAGAAATCAAACCTCAAGCTCAAGTGGGGCCACG
GATGAATCAGCCAAAAATGGCATCATCATGTTCCCTAAGGTTACTAGTTA
ACTCCCCCTCAACCAGTGGACATTGTTAGCTGTTCCATTGCATTAATCAT
CGTGGAGGAGTAGAGTTATCTGGTCGGTCATGAGCGGGGTTCGTGTAGGG
TCTAGAGGCCTATTTAATGCCCGTTGTTGTCGTCGCTCTGCATCTTCTTT
TGTATCATCCCCATCATCATCCATTTACTTGCATTCGTTCTTCGGTTCAC
GGAGTCCTTCTGTTCAGAGTCGAGTGCATTTATTATCTTCTTCTACTTCT
TCTTTGTATAGTACAGCTACAGCTACAGCTACAGCCGCCACAATGAGCCG
CCCCGACATTACCCTGTACACTGCGCAGACTCCCAATGGGATTAAGATTT
CCATTGCGCTGGAGGAGCTTGGGTATGCCAAACATACACCTTCCTGGGAT
AATCGGCAATTGACTAAAGCGATAATCCAGTCTGCCCTACAAAGTCGAGA
AGATTGACATCTCCAAGAACACCCAGAAAGAGCCGTATGCTCCCTAACCC
CCTTCCTCACATCAACTCACCACCACTAACCACCAACACAGATGGTTCCT
CGAAATCAACCCCAACGGCCGCATCCCCGCCTTAACCGACACCTTCACGG
ATGGGTCCAAGATCCGGCTTTTCGAATCCGGCAGCATCCTCACCTACCTG
GCGGAACAATACGACAAAGACCACAAGATCTCCTACCCCCAGGGAACCCG
CGAATACTACGAACAGAACAGCTGGCTCTACTTCCAGAACGCCGGTGTCG
GGCCCATGCAAGGCCAAGCGAACCACTTCCACCGGTACGCGCCCGAGCGC
ATCGAGTACGGCGTGAACCGCTACATCAACGAGACACGACGTCTATACAG
TGTGCTGGATGCGCACCTCGCCAAGTCGAAGTCTGGGTATCTTGTTGGTG
ATCACGTCAGTATTGCGGATATTTCGCATTGGGGATGGGTTGCGGCGGCC
GGGTGGGCGGGAGTTGATATTGAGGAGTTCCCGAATCTGAAGGCGTGGGA
GGAGCGCATGGCTGCTAGGGAGGGCGTTGAGAAGGGTAGGCATGTGCCGA
GTCCGCATACTATTAAGGAGCTCTTGAAGGATAAGGCCAAGGCGGAGAAG
ATTGCGGAGGAGTCGAAGGGGTGGATTCAGCAGGGGATGAAGGCGGATGC
TAAGCATTAGTTTGTTAGTATTATTTAGTTAGTAATGATGGATATGACTG
TTTGAATCTGCAGTGATGGGGTTGTGAGATAGTATTGATGGTGAAGTAAT
CAGACAGTTGTGCTTTAGTTACTGAAAGCTGCATACATCTTTAGCTGG
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Coding sequence (CDS) from alignment at ch4:4641939..4643336-

>KJC3_006088-T1 ID=KJC3_006088-T1|Name=KJC3_006088-T1|organism=Aspergillus niger KJC3|type=CDS|length=2898bp|location=Sequence derived from alignment at ch4:4641939..4643336- (Aspergillus niger KJC3)
ATGGTTCCTCGAAATCAACCCCAACGGCCGCATCCCCGCCTTAACCGACA
CCTTCACGGATGGGTCCAAGATCCGGCTTTTCGAATCCGGCAGCATCCTC
ACCTACCTGGCGGAACAATACGACAAAGACCACAAGATCTCCTACCCCCA
GGGAACCCGCGAATACTACGAACAGAACAGCTGGCTCTACTTCCAGAACG
CCGGTGTCGGGCCCATGCAAGGCCAAGCGAACCACTTCCACCGGTACGCG
CCCGAGCGCATCGAGTACGGCGTGAACCGCTACATCAACGAGACACGACG
TCTATACAGTGTGCTGGATGCGCACCTCGCCAAGTCGAAGTCTGGGTATC
TTGTTGGTGATCACGTCAGTATTGCGGATATTTCGCATTGGGGATGGGTT
GCGGCGGCCGGGTGGGCGGGAGTTGATATTGAGGAGTTCCCGAATCTGAA
GGCGTGGGAGGAGCGCATGGCTGCTAGGGAGGGCGTTGAGAAGGGTAGGC
ATGTGCCGAGTCCGCATACTATTAAGGAGCTCTTGAAGGATAAGGCCAAG
GCGGAGAAGATTGCGGAGGAGTCGAAGGGGTGGATTCAGCAGGGGATGAA
GGCGGATGCTAAGCATTAGTCTGCCCTACAAAGTCGAGAAGATTGACATC
TCCAAGAACACCCAGAAAGAGCCATGAGCGGGGTTCGTGTAGGGTCTAGA
GGCCTATTTAATGCCCGTTGTTGTCGTCGCTCTGCATCTTCTTTTGTATC
ATCCCCATCATCATCCATTTACTTGCATTCGTTCTTCGGTTCACGGAGTC
CTTCTGTTCAGAGTCGAGTGCATTTATTATCTTCTTCTACTTCTTCTTTG
TATAGTACAGCTACAGCTACAGCTACAGCCGCCACAATGAGCCGCCCCGA
CATTACCCTGTACACTGCGCAGACTCCCAATGGGATTAAGATTTCCATTG
CGCTGGAGGAGCTTGGATGGTTCCTCGAAATCAACCCCAACGGCCGCATC
CCCGCCTTAACCGACACCTTCACGGATGGGTCCAAGATCCGGCTTTTCGA
ATCCGGCAGCATCCTCACCTACCTGGCGGAACAATACGACAAAGACCACA
AGATCTCCTACCCCCAGGGAACCCGCGAATACTACGAACAGAACAGCTGG
CTCTACTTCCAGAACGCCGGTGTCGGGCCCATGCAAGGCCAAGCGAACCA
CTTCCACCGGTACGCGCCCGAGCGCATCGAGTACGGCGTGAACCGCTACA
TCAACGAGACACGACGTCTATACAGTGTGCTGGATGCGCACCTCGCCAAG
TCGAAGTCTGGGTATCTTGTTGGTGATCACGTCAGTATTGCGGATATTTC
GCATTGGGGATGGGTTGCGGCGGCCGGGTGGGCGGGAGTTGATATTGAGG
AGTTCCCGAATCTGAAGGCGTGGGAGGAGCGCATGGCTGCTAGGGAGGGC
GTTGAGAAGGGTAGGCATGTGCCGAGTCCGCATACTATTAAGGAGCTCTT
GAAGGATAAGGCCAAGGCGGAGAAGATTGCGGAGGAGTCGAAGGGGTGGA
TTCAGCAGGGGATGAAGGCGGATGCTAAGCATTAGTCTGCCCTACAAAGT
CGAGAAGATTGACATCTCCAAGAACACCCAGAAAGAGCCATGAGCGGGGT
TCGTGTAGGGTCTAGAGGCCTATTTAATGCCCGTTGTTGTCGTCGCTCTG
CATCTTCTTTTGTATCATCCCCATCATCATCCATTTACTTGCATTCGTTC
TTCGGTTCACGGAGTCCTTCTGTTCAGAGTCGAGTGCATTTATTATCTTC
TTCTACTTCTTCTTTGTATAGTACAGCTACAGCTACAGCTACAGCCGCCA
CAATGAGCCGCCCCGACATTACCCTGTACACTGCGCAGACTCCCAATGGG
ATTAAGATTTCCATTGCGCTGGAGGAGCTTGGATGGTTCCTCGAAATCAA
CCCCAACGGCCGCATCCCCGCCTTAACCGACACCTTCACGGATGGGTCCA
AGATCCGGCTTTTCGAATCCGGCAGCATCCTCACCTACCTGGCGGAACAA
TACGACAAAGACCACAAGATCTCCTACCCCCAGGGAACCCGCGAATACTA
CGAACAGAACAGCTGGCTCTACTTCCAGAACGCCGGTGTCGGGCCCATGC
AAGGCCAAGCGAACCACTTCCACCGGTACGCGCCCGAGCGCATCGAGTAC
GGCGTGAACCGCTACATCAACGAGACACGACGTCTATACAGTGTGCTGGA
TGCGCACCTCGCCAAGTCGAAGTCTGGGTATCTTGTTGGTGATCACGTCA
GTATTGCGGATATTTCGCATTGGGGATGGGTTGCGGCGGCCGGGTGGGCG
GGAGTTGATATTGAGGAGTTCCCGAATCTGAAGGCGTGGGAGGAGCGCAT
GGCTGCTAGGGAGGGCGTTGAGAAGGGTAGGCATGTGCCGAGTCCGCATA
CTATTAAGGAGCTCTTGAAGGATAAGGCCAAGGCGGAGAAGATTGCGGAG
GAGTCGAAGGGGTGGATTCAGCAGGGGATGAAGGCGGATGCTAAGCATTA
GTCTGCCCTACAAAGTCGAGAAGATTGACATCTCCAAGAACACCCAGAAA
GAGCCATGAGCGGGGTTCGTGTAGGGTCTAGAGGCCTATTTAATGCCCGT
TGTTGTCGTCGCTCTGCATCTTCTTTTGTATCATCCCCATCATCATCCAT
TTACTTGCATTCGTTCTTCGGTTCACGGAGTCCTTCTGTTCAGAGTCGAG
TGCATTTATTATCTTCTTCTACTTCTTCTTTGTATAGTACAGCTACAGCT
ACAGCTACAGCCGCCACAATGAGCCGCCCCGACATTACCCTGTACACTGC
GCAGACTCCCAATGGGATTAAGATTTCCATTGCGCTGGAGGAGCTTGG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_006088KJC3_006088Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006088-T1KJC3_006088-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006088-T1.cdsKJC3_006088-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006088-T1.utr3p1KJC3_006088-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006088-T1.exon3KJC3_006088-T1.exon3Aspergillus niger KJC3exon
KJC3_006088-T1.exon2KJC3_006088-T1.exon2Aspergillus niger KJC3exon
KJC3_006088-T1.exon1KJC3_006088-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006088-T1.utr5p1KJC3_006088-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036282
DBxrefInterPro:IPR010987
DBxrefInterPro:IPR040079
DBxrefInterPro:IPR004046
DBxrefInterPro:IPR004045
DBxrefInterPro:IPR036249
DBxrefPFAM:PF13417
DBxrefPFAM:PF13409
DBxrefPFAM:PF02798
DBxrefPFAM:PF14497
DBxrefPFAM:PF13410
DBxrefPFAM:PF00043
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:4641939..4643336 -
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