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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:4967192..4970549+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006185-T1 ID=KJC3_006185-T1|Name=KJC3_006185-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3358bp|location=Sequence derived from alignment at ch4:4967192..4970549+ (Aspergillus niger KJC3)
TTTACTTCTTCTTCTCTTCTCTTCATCCTTCGCTTCTTCTCTCCCTCTTC
AATATTTCCAACACATCTATCTAGCTTCTCTTCTTCAACCAGCATCCCCA
TGTCGACCGACCCCCACCCCGGTCCCGGTCTAGGGGACCTGGAGAAAGAA
CTCATCTGCTCGGTAAGTTTAATCCATTCCATCCCTCCATCATGTGGGGA
GATTTACGGAATGCGGTCTGCGACTCCCCGCCCACGAATATCTCACCGTC
CCCTTGCTTTGATCGACTAGCCAAAACTGGCCGGAAATTATTCCCAGTAG
ATGCTAGACAGGCCAGAAGCAAAAAGAGGAATACTCGGATTGTTTCTCTG
CAGTTTAATAAAGTTTAACGGCTAACTCATCCCTCTCCCCAGATCTGCAC
GGATCTGCTCTACCAGCCTCTCACCCTCCTGGACTGCTTGCACACCTTCT
GCGGCTCCTGTCTCAAAGAATGGTTCTCTGCACAAGCCTCCCGCGCCCGG
TCATCATCATCCGTCCGGTTCACATGTCCGTCCTGTCGCGCGGTTGTCCG
CGAAACCCGCCCTAATGCTACCGTCACCACATTACTGGATATGGTTCTGG
CGGCGAGTCCCGACCGGGATAAGTCGGCGGAGGAGAAGGAGGAAATTGCG
CGGAGATATAAACATGGTGATTCGGTGTTTCCTACTTTGCCTTCGGCTGA
ACGGGGGAGCGATGCGTCGGATGATGAGGATCGGCGGTTGCTGGAGGAGG
TAAGGGAATTGAGTCTGCAGGAGAGTCGGGTTCGGACGAGAGATACTACG
GCTTCTACTGGTCATCGGTCGAGGCAGTCGTCGCGGACTCGTCGCACGGA
TTCAAGTGCTGATGTGGATGGGGCGCGACAACGACGGCGTGAGGAGGAGC
GTGCTGCGCGGCGACGGCAGGGGGAGACTGTTTCGGAACGCAATAGACAC
ATCGAGCATCAGTCTAGTTTGCGGTCGTTGTTGAGTCTGTCGGATACGGA
AACGATACAGGACCAGATTCTACGGCAGATTCTGGAGGAGGGGCTGCTGG
ATGATATCGACTTGGATAATCTGGCTCCCGCGCAGGAAGAGGAGCTTAGT
GAGCGCATCGCTGATGCTTATCGTCGGAGGCACAGATTGCGGTCTCGCTC
GCAGCAACGGTTGGAGGCTCGGGAGACACATCAACCGTCGTCACGGGCTC
GGGCTCGCTCGCAGTCTACGCAGAGACCACAGGAAAGTTCTACGCCGACC
GAGTCTGCTCGGAGTCCTCCTGTGTCGAGACCGTATCTGCTAGATCCGCT
TGTGGCACGCAATGGAGCTTCGGGTCATCAGAGACGATTGTCGGATCAGG
GCAGCAGTCGCCGGCGAACGTCTCCTGTGCCTGCGAATCCTGCGTCTTCA
TCGGAGGTCACGCTGAGGCCTGCAGCGCGGTCGTCTAGTGATGTGGTTAC
TGATCGACCCCGAAATTCGCAGGCTGCCCGAGTGCGAACGGATTCGTCCG
TGCCACGGTCTCGGCGTGCTACGGCGTCTGAGCAGAACACTCCGAACATC
TGGGTGGAAGGCACCAGGGAACGTGCCATCCGACGAGCCCCGGGTAGGTT
ATCCATCGATTCACCACGAGTGGTTGCAGCTCTTGAGCAGAACACACACA
CTGGTTCCTCGCCAGCGAGCCCTGGGATGGTCGTCCCTGTGACTAGTTCC
TTAGTGGCAGAAGTTGGAGGAACAGGTAGATCAGAGGCGCGATCTCGACC
ATCTTCATCTCGGTCCAATGCGCCTCGCTCTGCTATCACGTTCAGTGAAC
CATCTATCTCATGCGACCGATGTGGCAAGGAGAAGATACAATACGATCTA
CACAAGAAGTGCCCCAAATGCAATGATGGCAAATACAACCTGTGTTTGAG
GTGCTATCGCACCGGCGAAGGGTGTCTCGAATGGGCAGGCTTCGCAAGAT
CGGCAGAAGCGGGCTTTGAACGCATTATCGCTTCTTCAAGCGGCCATCCC
CCACCACTACGCAGCTCCCAGCAGCACATCCTACTGTCGTGCAAGTACCG
TCGAGCACCAGACACAGCCTACCGTTCCGACCGAGACGGACGAGTCCTGA
CCACCGACGACCCAGTGAACAGACTAACCACCGGCTTCTTCTGCGATAGC
TGCCAATCTCCAGCCAACGACTGTTACTGGAAGTGTGACCAGTGCAACGA
AGGTGACTGGGGTTTTTGCAACCGCTGCGTGAACCAAGGACGATGCTGCA
CCCATGCCCTTCTCCCAATCTGCCGCATCCCACCCAACAGCAACTCATCC
CCAACCGCAACCGACAGCACACCCTCCCCATCTCTCGAAACCTACAAGAT
CCTCTCCATCGCAACAAACTGCGACATCTGCACACACCCAATCCCAGACT
CCACTCCCCGCTTCCACTGCCTCCAATGCAACAACGGCGACTACGACATC
TGCACCAACTGCTACCTCCGCCTCGTGGCCATCGGCAAGATCCGTAAAGA
GAACGGCCACAACGGCTGGCGCCGCTGCCTAAAAGGCCATCGCATGGCGG
TAATCGGCTTCGAAGACCACGAAGAAGGCCAACGCCGCGTCATCCTCCGC
GACCTCGTCGGCGGCCGTGCCCTGAACGACGACCACCTCATCCAACCCTC
CTCTCCAGCAGCCTCCCCAATCACCGCTATTTCTTCTTCCAACTCCACCA
TCGCCTCCCCCGAAATCGGCTCCGGTGACTGGAGCTGGAAAGAGGGCTCC
GAGCGACGCAAAAAGGCCTCGCGCATTAGACCCTGGACTATCGGTGTCCG
TGATCGTGATCGTGACCGGTCCTCCGAACCAAGTACACCCACCATCACCA
CATCTTCCCCCTTCACCACATCCAACCCAGCTATATCCTCTCAGATATCA
TCTCCCCCCACCACTCCTAATACTACGATGATGACTCCGACCAACACCCG
CCGCTACCCACCCGACGGCGGCGTCGGATTAGTCGTCCATGCCCTGTGGT
CATGGTACCCCGAAGACGGAGTCAAAGATGAATTGATGTTTCCGCGCGGC
GCGGAAATTACTGAGGCAGAGAATATCAATGATGATTGGTACTGGGGGTG
TTATGCTGGGTTGACGGGGTTGTTTCCGGGGGCGCATGTGTTTGTTGCGG
GGGAGGTGGTCTAAAACGATGATGATGGTGGTGGTGGTGGTGACAGTTCG
GGTTCATTGCATAATGTTGCTGTTTCTGTGTTTTTCTTTGCTCGATTCGT
TCTACGGTTCATTGACTGATGATGGGATGTTTCATGACTTATCTTTGTAT
GTAGTATATGTTGTTACTTATGATGAATGAATGAATGCCTGAATGAGTTG
ATGATCGA back to topCoding sequence (CDS) from alignment at ch4:4967192..4970549+ >KJC3_006185-T1 ID=KJC3_006185-T1|Name=KJC3_006185-T1|organism=Aspergillus niger KJC3|type=CDS|length=5670bp|location=Sequence derived from alignment at ch4:4967192..4970549+ (Aspergillus niger KJC3)
ATGTCGACCGACCCCCACCCCGGTCCCGGTCTAGGGGACCTGGAGAAAGA
ACTCATCTGCTCGATCTGCACGGATCTGCTCTACCAGCCTCTCACCCTCC
TGGACTGCTTGCACACCTTCTGCGGCTCCTGTCTCAAAGAATGGTTCTCT
GCACAAGCCTCCCGCGCCCGGTCATCATCATCCGTCCGGTTCACATGTCC
GTCCTGTCGCGCGGTTGTCCGCGAAACCCGCCCTAATGCTACCGTCACCA
CATTACTGGATATGGTTCTGGCGGCGAGTCCCGACCGGGATAAGTCGGCG
GAGGAGAAGGAGGAAATTGCGCGGAGATATAAACATGGTGATTCGGTGTT
TCCTACTTTGCCTTCGGCTGAACGGGGGAGCGATGCGTCGGATGATGAGG
ATCGGCGGTTGCTGGAGGAGGTAAGGGAATTGAGTCTGCAGGAGAGTCGG
GTTCGGACGAGAGATACTACGGCTTCTACTGGTCATCGGTCGAGGCAGTC
GTCGCGGACTCGTCGCACGGATTCAAGTGCTGATGTGGATGGGGCGCGAC
AACGACGGCGTGAGGAGGAGCGTGCTGCGCGGCGACGGCAGGGGGAGACT
GTTTCGGAACGCAATAGACACATCGAGCATCAGTCTAGTTTGCGGTCGTT
GTTGAGTCTGTCGGATACGGAAACGATACAGGACCAGATTCTACGGCAGA
TTCTGGAGGAGGGGCTGCTGGATGATATCGACTTGGATAATCTGGCTCCC
GCGCAGGAAGAGGAGCTTAGTGAGCGCATCGCTGATGCTTATCGTCGGAG
GCACAGATTGCGGTCTCGCTCGCAGCAACGGTTGGAGGCTCGGGAGACAC
ATCAACCGTCGTCACGGGCTCGGGCTCGCTCGCAGTCTACGCAGAGACCA
CAGGAAAGTTCTACGCCGACCGAGTCTGCTCGGAGTCCTCCTGTGTCGAG
ACCGTATCTGCTAGATCCGCTTGTGGCACGCAATGGAGCTTCGGGTCATC
AGAGACGATTGTCGGATCAGGGCAGCAGTCGCCGGCGAACGTCTCCTGTG
CCTGCGAATCCTGCGTCTTCATCGGAGGTCACGCTGAGGCCTGCAGCGCG
GTCGTCTAGTGATGTGGTTACTGATCGACCCCGAAATTCGCAGGCTGCCC
GAGTGCGAACGGATTCGTCCGTGCCACGGTCTCGGCGTGCTACGGCGTCT
GAGCAGAACACTCCGAACATCTGGGTGGAAGGCACCAGGGAACGTGCCAT
CCGACGAGCCCCGGGTAGGTTATCCATCGATTCACCACGAGTGGTTGCAG
CTCTTGAGCAGAACACACACACTGGTTCCTCGCCAGCGAGCCCTGGGATG
GTCGTCCCTGTGACTAGTTCCTTAGTGGCAGAAGTTGGAGGAACAGGTAG
ATCAGAGGCGCGATCTCGACCATCTTCATCTCGGTCCAATGCGCCTCGCT
CTGCTATCACGTTCAGTGAACCATCTATCTCATGCGACCGATGTGGCAAG
GAGAAGATACAATACGATCTACACAAGAAGTGCCCCAAATGCAATGATGG
CAAATACAACCTGTGTTTGAGGTGCTATCGCACCGGCGAAGGGTGTCTCG
AATGGGCAGGCTTCGCAAGATCGGCAGAAGCGGGCTTTGAACGCATTATC
GCTTCTTCAAGCGGCCATCCCCCACCACTACGCAGCTCCCAGCAGCACAT
CCTACTGTCGTGCAAGTACCGTCGAGCACCAGACACAGCCTACCGTTCCG
ACCGAGACGGACGAGTCCTGACCACCGACGACCCAGTGAACAGACTAACC
ACCGGCTTCTTCTGCGATAGCTGCCAATCTCCAGCCAACGACTGTTACTG
GAAGTGTGACCAGTGCAACGAAGGTGACTGGGGTTTTTGCAACCGCTGCG
TGAACCAAGGACGATGCTGCACCCATGCCCTTCTCCCAATCTGCCGCATC
CCACCCAACAGCAACTCATCCCCAACCGCAACCGACAGCACACCCTCCCC
ATCTCTCGAAACCTACAAGATCCTCTCCATCGCAACAAACTGCGACATCT
GCACACACCCAATCCCAGACTCCACTCCCCGCTTCCACTGCCTCCAATGC
AACAACGGCGACTACGACATCTGCACCAACTGCTACCTCCGCCTCGTGGC
CATCGGCAAGATCCGTAAAGAGAACGGCCACAACGGCTGGCGCCGCTGCC
TAAAAGGCCATCGCATGGCGGTAATCGGCTTCGAAGACCACGAAGAAGGC
CAACGCCGCGTCATCCTCCGCGACCTCGTCGGCGGCCGTGCCCTGAACGA
CGACCACCTCATCCAACCCTCCTCTCCAGCAGCCTCCCCAATCACCGCTA
TTTCTTCTTCCAACTCCACCATCGCCTCCCCCGAAATCGGCTCCGGTGAC
TGGAGCTGGAAAGAGGGCTCCGAGCGACGCAAAAAGGCCTCGCGCATTAG
ACCCTGGACTATCGGTGTCCGTGATCGTGATCGTGACCGGTCCTCCGAAC
CAAGTACACCCACCATCACCACATCTTCCCCCTTCACCACATCCAACCCA
GCTATATCCTCTCAGATATCATCTCCCCCCACCACTCCTAATACTACGAT
GATGACTCCGACCAACACCCGCCGCTACCCACCCGACGGCGGCGTCGGAT
TAGTCGTCCATGCCCTGTGGTCATGGTACCCCGAAGACGGAGTCAAAGAT
GAATTGATGTTTCCGCGCGGCGCGGAAATTACTGAGGCAGAGAATATCAA
TGATGATTGGTACTGGGGGTGTTATGCTGGGTTGACGGGGTTGTTTCCGG
GGGCGCATGTGTTTGTTGCGGGGGAGGTGGTCTAAATGTCGACCGACCCC
CACCCCGGTCCCGGTCTAGGGGACCTGGAGAAAGAACTCATCTGCTCGAT
CTGCACGGATCTGCTCTACCAGCCTCTCACCCTCCTGGACTGCTTGCACA
CCTTCTGCGGCTCCTGTCTCAAAGAATGGTTCTCTGCACAAGCCTCCCGC
GCCCGGTCATCATCATCCGTCCGGTTCACATGTCCGTCCTGTCGCGCGGT
TGTCCGCGAAACCCGCCCTAATGCTACCGTCACCACATTACTGGATATGG
TTCTGGCGGCGAGTCCCGACCGGGATAAGTCGGCGGAGGAGAAGGAGGAA
ATTGCGCGGAGATATAAACATGGTGATTCGGTGTTTCCTACTTTGCCTTC
GGCTGAACGGGGGAGCGATGCGTCGGATGATGAGGATCGGCGGTTGCTGG
AGGAGGTAAGGGAATTGAGTCTGCAGGAGAGTCGGGTTCGGACGAGAGAT
ACTACGGCTTCTACTGGTCATCGGTCGAGGCAGTCGTCGCGGACTCGTCG
CACGGATTCAAGTGCTGATGTGGATGGGGCGCGACAACGACGGCGTGAGG
AGGAGCGTGCTGCGCGGCGACGGCAGGGGGAGACTGTTTCGGAACGCAAT
AGACACATCGAGCATCAGTCTAGTTTGCGGTCGTTGTTGAGTCTGTCGGA
TACGGAAACGATACAGGACCAGATTCTACGGCAGATTCTGGAGGAGGGGC
TGCTGGATGATATCGACTTGGATAATCTGGCTCCCGCGCAGGAAGAGGAG
CTTAGTGAGCGCATCGCTGATGCTTATCGTCGGAGGCACAGATTGCGGTC
TCGCTCGCAGCAACGGTTGGAGGCTCGGGAGACACATCAACCGTCGTCAC
GGGCTCGGGCTCGCTCGCAGTCTACGCAGAGACCACAGGAAAGTTCTACG
CCGACCGAGTCTGCTCGGAGTCCTCCTGTGTCGAGACCGTATCTGCTAGA
TCCGCTTGTGGCACGCAATGGAGCTTCGGGTCATCAGAGACGATTGTCGG
ATCAGGGCAGCAGTCGCCGGCGAACGTCTCCTGTGCCTGCGAATCCTGCG
TCTTCATCGGAGGTCACGCTGAGGCCTGCAGCGCGGTCGTCTAGTGATGT
GGTTACTGATCGACCCCGAAATTCGCAGGCTGCCCGAGTGCGAACGGATT
CGTCCGTGCCACGGTCTCGGCGTGCTACGGCGTCTGAGCAGAACACTCCG
AACATCTGGGTGGAAGGCACCAGGGAACGTGCCATCCGACGAGCCCCGGG
TAGGTTATCCATCGATTCACCACGAGTGGTTGCAGCTCTTGAGCAGAACA
CACACACTGGTTCCTCGCCAGCGAGCCCTGGGATGGTCGTCCCTGTGACT
AGTTCCTTAGTGGCAGAAGTTGGAGGAACAGGTAGATCAGAGGCGCGATC
TCGACCATCTTCATCTCGGTCCAATGCGCCTCGCTCTGCTATCACGTTCA
GTGAACCATCTATCTCATGCGACCGATGTGGCAAGGAGAAGATACAATAC
GATCTACACAAGAAGTGCCCCAAATGCAATGATGGCAAATACAACCTGTG
TTTGAGGTGCTATCGCACCGGCGAAGGGTGTCTCGAATGGGCAGGCTTCG
CAAGATCGGCAGAAGCGGGCTTTGAACGCATTATCGCTTCTTCAAGCGGC
CATCCCCCACCACTACGCAGCTCCCAGCAGCACATCCTACTGTCGTGCAA
GTACCGTCGAGCACCAGACACAGCCTACCGTTCCGACCGAGACGGACGAG
TCCTGACCACCGACGACCCAGTGAACAGACTAACCACCGGCTTCTTCTGC
GATAGCTGCCAATCTCCAGCCAACGACTGTTACTGGAAGTGTGACCAGTG
CAACGAAGGTGACTGGGGTTTTTGCAACCGCTGCGTGAACCAAGGACGAT
GCTGCACCCATGCCCTTCTCCCAATCTGCCGCATCCCACCCAACAGCAAC
TCATCCCCAACCGCAACCGACAGCACACCCTCCCCATCTCTCGAAACCTA
CAAGATCCTCTCCATCGCAACAAACTGCGACATCTGCACACACCCAATCC
CAGACTCCACTCCCCGCTTCCACTGCCTCCAATGCAACAACGGCGACTAC
GACATCTGCACCAACTGCTACCTCCGCCTCGTGGCCATCGGCAAGATCCG
TAAAGAGAACGGCCACAACGGCTGGCGCCGCTGCCTAAAAGGCCATCGCA
TGGCGGTAATCGGCTTCGAAGACCACGAAGAAGGCCAACGCCGCGTCATC
CTCCGCGACCTCGTCGGCGGCCGTGCCCTGAACGACGACCACCTCATCCA
ACCCTCCTCTCCAGCAGCCTCCCCAATCACCGCTATTTCTTCTTCCAACT
CCACCATCGCCTCCCCCGAAATCGGCTCCGGTGACTGGAGCTGGAAAGAG
GGCTCCGAGCGACGCAAAAAGGCCTCGCGCATTAGACCCTGGACTATCGG
TGTCCGTGATCGTGATCGTGACCGGTCCTCCGAACCAAGTACACCCACCA
TCACCACATCTTCCCCCTTCACCACATCCAACCCAGCTATATCCTCTCAG
ATATCATCTCCCCCCACCACTCCTAATACTACGATGATGACTCCGACCAA
CACCCGCCGCTACCCACCCGACGGCGGCGTCGGATTAGTCGTCCATGCCC
TGTGGTCATGGTACCCCGAAGACGGAGTCAAAGATGAATTGATGTTTCCG
CGCGGCGCGGAAATTACTGAGGCAGAGAATATCAATGATGATTGGTACTG
GGGGTGTTATGCTGGGTTGACGGGGTTGTTTCCGGGGGCGCATGTGTTTG
TTGCGGGGGAGGTGGTCTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006185-T1.utr5p1 | KJC3_006185-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006185-T1.utr3p1 | KJC3_006185-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036028 |
| DBxref | InterPro:IPR017907 |
| DBxref | InterPro:IPR013083 |
| DBxref | InterPro:IPR027370 |
| DBxref | InterPro:IPR001841 |
| DBxref | InterPro:IPR001452 |
| DBxref | PFAM:PF13445 |
| DBxref | PFAM:PF13639 |
| DBxref | PFAM:PF13923 |
| DBxref | PFAM:PF00097 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:4967192..4970549 + |
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