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KJC3_006210-T1, KJC3_006210-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006210-T1
Unique NameKJC3_006210-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:5037118..5038776-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006210-T1 ID=KJC3_006210-T1|Name=KJC3_006210-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1659bp|location=Sequence derived from alignment at ch4:5037118..5038776- (Aspergillus niger KJC3)
CGTCTCCATCCAGTCCCTTCGATCGTTCGATGTGACTTCCAGGGTCCTGA
TCCCATTCTCATACTTCCGATGTCTCGCCGTAATATCCAAGAAAAGGAGA
AGAGTGGAGGACACAACAAGTCAAATGAAAAACCTACTTATAGAACCTTT
GTATCCGTCTCCATGGGTTCTCTTCCATTCCCTCATCACGCTCTCAGTCT
CTCTTTCTTGTCTTTCCTTTCCCAGCTTCTCTCTAGTCCTTCCTTAATCG
TACCCGGTTGATCCAGGTTCCATTCCTTCATTATCATCATGCATTTCCTC
CAGAACGCCGTTGTGGCCGCCACTATGGGCGCTGCGCTGGCCGCCGCTGC
TCCTCTCGAGAAGCGCTCCTGCACTTTCACCTCCGCCTCTGCTGCCAAGT
CCGGCAAGTCCTCTTGCTCCACCATCACCCTCGACAACATCGCGGTCCCC
GCTGGTGAGACTCTTGACTTGACTGGCCTCAAGAAGGGTACCACCGTACG
TCTTCTCTAGCTCCCATAGTACTCTTCCTACTCCGATTGGACCAACTAAC
TCTCTTCCCTCACAGGTCATCTTCGAGGGTGAGACCACCTTCGGCTACAA
GGAATGGAAGGGTCCCCTGATCTCCATGTCCGGTACCGACATCACCGTCA
AGCAGGCCTCCGGTGCCAAGATCAACTGCGACGGTGCTCGCTGGTGGGAC
GGCAAGGGTAGCAACGGTGGCAAGACCAAGCCCAAGTTCTTCCAGGCCCA
CAAGCTCGACCAGTCCAGCATCACCGGCCTGAAGGTCTACAACACCCCTG
TCCAGGGTTTCAGCATTCTGGCCGACCACCTGACCATCACCGATGTGACC
ATCGACAACTCCGCCGGTACCAGCAAGGGTCACAACACCGATGCCTTTGA
CATTGGCCAGAGTACCTACATCACCATTGACGGTGCCACCGTCTACAACC
AGGATGACTGCCTGGCCATCAACTCGGGTGAGGTATGTATATGTCTTGCC
CCATCGCGCTGCCACTGTCCCGTAGCCACACGTGATTAGAGACTGACTAG
AACACAGCACATCACCTTCACCAACGGCTACTGTGATGGTGGCCACGGTC
TCTCCATCGGTTCCATCGGTGGCCGCAGTGACAACACCGTCAACGACGTG
ACCATCTCCAACTCCAAGGTGCTCAACTCCCAGAACGGTGTCCGCATCAA
GACCATCTACGGCAAGACTGGCACTGTCGAGAACGTCAAGTTTGAGGACA
TCACCCTGTCCGACATCAGCAAGTACGGTATTGTCGTTGAGCAGGACTAC
GAGAACGGCAGCCCCACCGGCACGCCCACCAACGGTGTCAAGGTTGAGGA
CATCACTTTCAAGAAGGTCACCGGCAGCGTCAAGAGCTCTGGTACTGACA
TCTACATCCTGTGCGGTTCCGGCAGCTGCTCGAACTGGACCTGGAGCGGT
GTTGATGTGACTGGCGGCAAGAAGAGCAGCAAGTGCAAGAACGTCCCCTC
GGGCGCTTCCTGCAGCGATTAAACGGGTCTCTGGCCAGCTGTGTTGAGCC
TTCCTAGCAAGGCTGCGTGAGGTTCTCGTTCAGGACTCTGGCATCACGCC
GGGAGTGTTTGTATTAGCTTTTAATTTTAGTGTATCATTGGAAAAATGCA
TGACTCGAG
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Coding sequence (CDS) from alignment at ch4:5037118..5038776-

>KJC3_006210-T1 ID=KJC3_006210-T1|Name=KJC3_006210-T1|organism=Aspergillus niger KJC3|type=CDS|length=3267bp|location=Sequence derived from alignment at ch4:5037118..5038776- (Aspergillus niger KJC3)
CACATCACCTTCACCAACGGCTACTGTGATGGTGGCCACGGTCTCTCCAT
CGGTTCCATCGGTGGCCGCAGTGACAACACCGTCAACGACGTGACCATCT
CCAACTCCAAGGTGCTCAACTCCCAGAACGGTGTCCGCATCAAGACCATC
TACGGCAAGACTGGCACTGTCGAGAACGTCAAGTTTGAGGACATCACCCT
GTCCGACATCAGCAAGTACGGTATTGTCGTTGAGCAGGACTACGAGAACG
GCAGCCCCACCGGCACGCCCACCAACGGTGTCAAGGTTGAGGACATCACT
TTCAAGAAGGTCACCGGCAGCGTCAAGAGCTCTGGTACTGACATCTACAT
CCTGTGCGGTTCCGGCAGCTGCTCGAACTGGACCTGGAGCGGTGTTGATG
TGACTGGCGGCAAGAAGAGCAGCAAGTGCAAGAACGTCCCCTCGGGCGCT
TCCTGCAGCGATTAAGTCATCTTCGAGGGTGAGACCACCTTCGGCTACAA
GGAATGGAAGGGTCCCCTGATCTCCATGTCCGGTACCGACATCACCGTCA
AGCAGGCCTCCGGTGCCAAGATCAACTGCGACGGTGCTCGCTGGTGGGAC
GGCAAGGGTAGCAACGGTGGCAAGACCAAGCCCAAGTTCTTCCAGGCCCA
CAAGCTCGACCAGTCCAGCATCACCGGCCTGAAGGTCTACAACACCCCTG
TCCAGGGTTTCAGCATTCTGGCCGACCACCTGACCATCACCGATGTGACC
ATCGACAACTCCGCCGGTACCAGCAAGGGTCACAACACCGATGCCTTTGA
CATTGGCCAGAGTACCTACATCACCATTGACGGTGCCACCGTCTACAACC
AGGATGACTGCCTGGCCATCAACTCGGGTGAGATGCATTTCCTCCAGAAC
GCCGTTGTGGCCGCCACTATGGGCGCTGCGCTGGCCGCCGCTGCTCCTCT
CGAGAAGCGCTCCTGCACTTTCACCTCCGCCTCTGCTGCCAAGTCCGGCA
AGTCCTCTTGCTCCACCATCACCCTCGACAACATCGCGGTCCCCGCTGGT
GAGACTCTTGACTTGACTGGCCTCAAGAAGGGTACCACCCACATCACCTT
CACCAACGGCTACTGTGATGGTGGCCACGGTCTCTCCATCGGTTCCATCG
GTGGCCGCAGTGACAACACCGTCAACGACGTGACCATCTCCAACTCCAAG
GTGCTCAACTCCCAGAACGGTGTCCGCATCAAGACCATCTACGGCAAGAC
TGGCACTGTCGAGAACGTCAAGTTTGAGGACATCACCCTGTCCGACATCA
GCAAGTACGGTATTGTCGTTGAGCAGGACTACGAGAACGGCAGCCCCACC
GGCACGCCCACCAACGGTGTCAAGGTTGAGGACATCACTTTCAAGAAGGT
CACCGGCAGCGTCAAGAGCTCTGGTACTGACATCTACATCCTGTGCGGTT
CCGGCAGCTGCTCGAACTGGACCTGGAGCGGTGTTGATGTGACTGGCGGC
AAGAAGAGCAGCAAGTGCAAGAACGTCCCCTCGGGCGCTTCCTGCAGCGA
TTAAGTCATCTTCGAGGGTGAGACCACCTTCGGCTACAAGGAATGGAAGG
GTCCCCTGATCTCCATGTCCGGTACCGACATCACCGTCAAGCAGGCCTCC
GGTGCCAAGATCAACTGCGACGGTGCTCGCTGGTGGGACGGCAAGGGTAG
CAACGGTGGCAAGACCAAGCCCAAGTTCTTCCAGGCCCACAAGCTCGACC
AGTCCAGCATCACCGGCCTGAAGGTCTACAACACCCCTGTCCAGGGTTTC
AGCATTCTGGCCGACCACCTGACCATCACCGATGTGACCATCGACAACTC
CGCCGGTACCAGCAAGGGTCACAACACCGATGCCTTTGACATTGGCCAGA
GTACCTACATCACCATTGACGGTGCCACCGTCTACAACCAGGATGACTGC
CTGGCCATCAACTCGGGTGAGATGCATTTCCTCCAGAACGCCGTTGTGGC
CGCCACTATGGGCGCTGCGCTGGCCGCCGCTGCTCCTCTCGAGAAGCGCT
CCTGCACTTTCACCTCCGCCTCTGCTGCCAAGTCCGGCAAGTCCTCTTGC
TCCACCATCACCCTCGACAACATCGCGGTCCCCGCTGGTGAGACTCTTGA
CTTGACTGGCCTCAAGAAGGGTACCACCCACATCACCTTCACCAACGGCT
ACTGTGATGGTGGCCACGGTCTCTCCATCGGTTCCATCGGTGGCCGCAGT
GACAACACCGTCAACGACGTGACCATCTCCAACTCCAAGGTGCTCAACTC
CCAGAACGGTGTCCGCATCAAGACCATCTACGGCAAGACTGGCACTGTCG
AGAACGTCAAGTTTGAGGACATCACCCTGTCCGACATCAGCAAGTACGGT
ATTGTCGTTGAGCAGGACTACGAGAACGGCAGCCCCACCGGCACGCCCAC
CAACGGTGTCAAGGTTGAGGACATCACTTTCAAGAAGGTCACCGGCAGCG
TCAAGAGCTCTGGTACTGACATCTACATCCTGTGCGGTTCCGGCAGCTGC
TCGAACTGGACCTGGAGCGGTGTTGATGTGACTGGCGGCAAGAAGAGCAG
CAAGTGCAAGAACGTCCCCTCGGGCGCTTCCTGCAGCGATTAAGTCATCT
TCGAGGGTGAGACCACCTTCGGCTACAAGGAATGGAAGGGTCCCCTGATC
TCCATGTCCGGTACCGACATCACCGTCAAGCAGGCCTCCGGTGCCAAGAT
CAACTGCGACGGTGCTCGCTGGTGGGACGGCAAGGGTAGCAACGGTGGCA
AGACCAAGCCCAAGTTCTTCCAGGCCCACAAGCTCGACCAGTCCAGCATC
ACCGGCCTGAAGGTCTACAACACCCCTGTCCAGGGTTTCAGCATTCTGGC
CGACCACCTGACCATCACCGATGTGACCATCGACAACTCCGCCGGTACCA
GCAAGGGTCACAACACCGATGCCTTTGACATTGGCCAGAGTACCTACATC
ACCATTGACGGTGCCACCGTCTACAACCAGGATGACTGCCTGGCCATCAA
CTCGGGTGAGATGCATTTCCTCCAGAACGCCGTTGTGGCCGCCACTATGG
GCGCTGCGCTGGCCGCCGCTGCTCCTCTCGAGAAGCGCTCCTGCACTTTC
ACCTCCGCCTCTGCTGCCAAGTCCGGCAAGTCCTCTTGCTCCACCATCAC
CCTCGACAACATCGCGGTCCCCGCTGGTGAGACTCTTGACTTGACTGGCC
TCAAGAAGGGTACCACC
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_006210KJC3_006210Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006210-T1KJC3_006210-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006210-T1.cdsKJC3_006210-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006210-T1.utr3p1KJC3_006210-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006210-T1.exon3KJC3_006210-T1.exon3Aspergillus niger KJC3exon
KJC3_006210-T1.exon2KJC3_006210-T1.exon2Aspergillus niger KJC3exon
KJC3_006210-T1.exon1KJC3_006210-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006210-T1.utr5p1KJC3_006210-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteSECRETED:SignalP(1-18)
NoteCAZy:GH28
DBxrefInterPro:IPR011050
DBxrefInterPro:IPR000743
DBxrefInterPro:IPR012334
DBxrefInterPro:IPR006626
DBxrefPFAM:PF00295
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:5037118..5038776 -
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