You are here

Home

KJC3_006220-T1, KJC3_006220-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006220-T1
Unique NameKJC3_006220-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:5063789..5065138+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006220-T1 ID=KJC3_006220-T1|Name=KJC3_006220-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1350bp|location=Sequence derived from alignment at ch4:5063789..5065138+ (Aspergillus niger KJC3)
CCGGTTTTCTAATAATGTATATAGCGGTCTCGTCGATCTCGACCAACTCA
GTATGTCTGTTGAATCGCTCAGCTATGTCCTGAAAGTGCTAGTTTAAAAT
TTCTTCTAGTTCTTCATAGCCTACACGCTGATCTTATTTACTTACCCATA
CGTGGGCTGTTCCCGTATTTCACTACAATGTATGCCAGTCACCGTGAAAT
CATGTATAGCATCATCAAGCCGTGGTCTCCCCTCGAATCCGCAGAAGACG
TCAAAACCCGACTATCATGACTTTATATTTCCAATAATAGTTAAGTGAGT
CACAATGAGCTCTACATTGAATTTGTCGACTATAAAACCCGTCCAGATTC
CAGTGGGTTTGCTTCAAAACTTCTTCGACAACCACCTCGTTTACTACTAT
CCCACGCTCAACTCGACTTTTCTACAACAACAGGCTCACCAAAGCATCTT
TATCAATATCTATTCTTGGTCAAATTTCAACTCCAACTTTGTTTTATACA
TCTCAGCCAGGCATCTCAACCAGGCAACTACTCATCCTTACTCCTACTAA
CAGACTCCTATCGCCATGCCTTCCTTCTCATCTACCTTCTCCTCTATTTT
CAAATCCTCCAAGAAGAAGAAGACTACCAAGAAGACCTCCTCCGCCACTA
TAGAGATGTCATCTATCCCTACGTCTTCTAAGAAGACTACCACTACAACT
GCCCATCATGGCAAGAATATCAACCACGTCAATAATAATATCAACAAGAG
CGACAATAAGATCGCCAAGGACAACTATAATAATAGGAACAACAAGACTG
CCGACAAGGCTATGAAGAGCCCCGATAATAACTACTACAATAACAATATC
ACCGCCACCGCTACTGCCACCGCCACCAACAACAACAACAGAAACAATAT
GAGCGACAACGACTACAATAAAAGTAATAACAACATCATCGCCACCAACG
ACAGCGAGCCAGTTGATCTTGGTATACCTCGCAGAGGGCAGTATGTCACC
CGAGATGGCATCGACGTCGTAGCAGTCCTCGAGACTTGGTATGTTCAGTT
GACTCCTCTTGTAAAACAGCTGGCTAACGTGAAACAGGCATCAAATCTAT
ACCGGATGGCAGATAGTCTCCGCTGAGTTGGATAGAATGGAAAAGATGCG
TGAACGTCGTTTTATATGTGAGTATATAGATCTCTTACATAGTAGCAAGA
TAGTAAGCTAATTGAGGTGCAGAAACGGCTCACCCCGACAACGAAAACAG
CATAGTCAAAGCGTTGGCTATTGCGTGGAGATGCATGGAACTTATTGAGG
GTTCAAGTGGATTGTATTTTGTGTGGAGATGCTCTATAGCGAGTGTAGGA
back to top

Coding sequence (CDS) from alignment at ch4:5063789..5065138+

>KJC3_006220-T1 ID=KJC3_006220-T1|Name=KJC3_006220-T1|organism=Aspergillus niger KJC3|type=CDS|length=1665bp|location=Sequence derived from alignment at ch4:5063789..5065138+ (Aspergillus niger KJC3)
ATGCCTTCCTTCTCATCTACCTTCTCCTCTATTTTCAAATCCTCCAAGAA
GAAGAAGACTACCAAGAAGACCTCCTCCGCCACTATAGAGATGTCATCTA
TCCCTACGTCTTCTAAGAAGACTACCACTACAACTGCCCATCATGGCAAG
AATATCAACCACGTCAATAATAATATCAACAAGAGCGACAATAAGATCGC
CAAGGACAACTATAATAATAGGAACAACAAGACTGCCGACAAGGCTATGA
AGAGCCCCGATAATAACTACTACAATAACAATATCACCGCCACCGCTACT
GCCACCGCCACCAACAACAACAACAGAAACAATATGAGCGACAACGACTA
CAATAAAAGTAATAACAACATCATCGCCACCAACGACAGCGAGCCAGTTG
ATCTTGGTATACCTCGCAGAGGGCAGTATGTCACCCGAGATGGCATCGAC
GTCGTAGCAGTCCTCGAGACTTGGCATCAAATCTATACCGGATGGCAGAT
AGTCTCCGCTGAGTTGGATAGAATGGAAAAGATGCGTGAACGTCGTTTTA
TATAAATGCCTTCCTTCTCATCTACCTTCTCCTCTATTTTCAAATCCTCC
AAGAAGAAGAAGACTACCAAGAAGACCTCCTCCGCCACTATAGAGATGTC
ATCTATCCCTACGTCTTCTAAGAAGACTACCACTACAACTGCCCATCATG
GCAAGAATATCAACCACGTCAATAATAATATCAACAAGAGCGACAATAAG
ATCGCCAAGGACAACTATAATAATAGGAACAACAAGACTGCCGACAAGGC
TATGAAGAGCCCCGATAATAACTACTACAATAACAATATCACCGCCACCG
CTACTGCCACCGCCACCAACAACAACAACAGAAACAATATGAGCGACAAC
GACTACAATAAAAGTAATAACAACATCATCGCCACCAACGACAGCGAGCC
AGTTGATCTTGGTATACCTCGCAGAGGGCAGTATGTCACCCGAGATGGCA
TCGACGTCGTAGCAGTCCTCGAGACTTGGCATCAAATCTATACCGGATGG
CAGATAGTCTCCGCTGAGTTGGATAGAATGGAAAAGATGCGTGAACGTCG
TTTTATATAAATGCCTTCCTTCTCATCTACCTTCTCCTCTATTTTCAAAT
CCTCCAAGAAGAAGAAGACTACCAAGAAGACCTCCTCCGCCACTATAGAG
ATGTCATCTATCCCTACGTCTTCTAAGAAGACTACCACTACAACTGCCCA
TCATGGCAAGAATATCAACCACGTCAATAATAATATCAACAAGAGCGACA
ATAAGATCGCCAAGGACAACTATAATAATAGGAACAACAAGACTGCCGAC
AAGGCTATGAAGAGCCCCGATAATAACTACTACAATAACAATATCACCGC
CACCGCTACTGCCACCGCCACCAACAACAACAACAGAAACAATATGAGCG
ACAACGACTACAATAAAAGTAATAACAACATCATCGCCACCAACGACAGC
GAGCCAGTTGATCTTGGTATACCTCGCAGAGGGCAGTATGTCACCCGAGA
TGGCATCGACGTCGTAGCAGTCCTCGAGACTTGGCATCAAATCTATACCG
GATGGCAGATAGTCTCCGCTGAGTTGGATAGAATGGAAAAGATGCGTGAA
CGTCGTTTTATATAA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_006220KJC3_006220Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006220-T1KJC3_006220-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006220-T1.utr5p1KJC3_006220-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006220-T1.exon1KJC3_006220-T1.exon1Aspergillus niger KJC3exon
KJC3_006220-T1.exon2KJC3_006220-T1.exon2Aspergillus niger KJC3exon
KJC3_006220-T1.exon3KJC3_006220-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006220-T1.cdsKJC3_006220-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006220-T1.utr3p1KJC3_006220-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:5063789..5065138 +
Powered by Drupal