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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:5086024..5087804- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006227-T2 ID=KJC3_006227-T2|Name=KJC3_006227-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1781bp|location=Sequence derived from alignment at ch4:5086024..5087804- (Aspergillus niger KJC3)
GTACCAAGTAACTACCTCTCTCACCGTCAATCCGCTTCGCCATGAGAATG
CCCCATTGCAGCCTGCCTACTCCCTGCTCGTATTGGCTATTGTGATCAGT
CCTGCTGTATTCGCCGGAACGTTATTTGTAGCATACTAGAAACACCTGGA
TCCCTTCCTCTATCAGGTTATGTCTTCTGCTCCTGACGGGCAACCAATGC
TGCCTCTTCCTGGAGCCCCGTCTTCTTCATGGTCCCGATTTCGTGAGAGA
TTCGGTGCACTATTTCATGGCGCTGACCCCAGAGTCTGTGTTGCATTCTG
GCTACTTGGTAAGCCGTTGGCCGTCTTGTAGACACCGCGAACTGATAAGA
ACTACTCGTGGCTCACTGACCGGCATGCGTGACTCGCAACAGGATTGATC
AACAATGTCCTCTATGTTATCATTTTGTCCGCAGCCCTCGATTTAGTTGG
TCCTAGTGTCCCCAAGGGCGTCGTTCTTCTCGCAGACGTCATTCCCTCAT
TCGGAACCAAGCTGATAGCACCCTACTTTATTCATTTGGTTCCATATCCC
GCTCGAGTATTGTTCTGTGTGCTATGTTCAGCCGTGGGTATGCTTCTGGT
GGCCCTGAGCCCAGCGTATACAGATGGCGGTTCAATTTCCACCAAAATCG
CGGGCATTATTCTGGCGAGCTTGTCGAGCGGAGGAGGCGAACTGAGCTTC
CTAGCACTGACGCACTTCTACGGCCCGTTCAGTCTGGCAGCCTGGGGTAG
TGGTACCGGAGCCGCCGGGCTGGTCGGGGCTGGTGCGTACGCCGTCGCAA
CTACCTCTATGGGGCTCAGTGTCAGGTCGACACTCCTAGCAGCTGCCTGC
CTGCCAGCAATCATGGTTGTGAGCTTCTTCGCCATTCTGCCAAGAGCTCC
CATACGGACATTGGCCGCTGCACCTGTTGAGTATCGTGCAATTGACCAGG
AAGATCGGGATGACCTTCTGGATGAGCGGCACGGTCTACTCGGCTCCTCA
GCTCCCCCGAGCCGAAACAAGAGGAGCGACGCGAGTCATGAGCTCGGCTT
GCAGGTGTTCAAAGCTAACCTGCAGCGAGCTAGGGGACTTTTCTTTCCCT
TGTAAGTGCACGCTAGTATCATCAAGCAATAATTGGCATGCTTACATTTC
CGCGCAGCATGCTCCCCCTTCTGCTAGTCTATGTGGCCGAATACACAATC
AACCAAGGGGTTTCTCCGACCCTGCTGTTTCCACTTAAAGATTCGCCGTT
TGAACATTATCGTGCATTTTATCCCGCGTACAATGCGATCTATCAGGTTG
GTGTTTTCATCTCGCGATCGTCCACCCCTTTCTTTCGGATTCACGATCTT
TACCTTCCGTCACTGCTGCAAATCATCAATTTGGTCGTATTGACATTGCA
CGCCTTGTTTGACTTCATCCCGAGCGTGTACATAATATTTATAGTCATCT
TCTGGGAAGGGCTATTAGGGGGGCTGGTTTATGTCAATACATTCGCCGAA
ATCGGGGACCGGGTGCCGAAGGAAGACCGAGAATTCTCGCTCGGAGCGAC
GACTGTCAGCGATTCTGCCGGAATTTGTATAGCGGGCTTTCTGGGAATGG
CGTTTGAGGTCTGGTTGTGTGATTGGCAGGTCGCCCACGGTCGGGATTAT
TGCCGGAAACTATGAGCAGTAGAGAGAACCTTAGAATGATAGGGGAATGA
AATGATATACTACTATGCAATCCATATATAATAGATGATAATAATTTCTC
ATGCATTGTTAGCTTCAGTACGGAGTAGAGG back to topCoding sequence (CDS) from alignment at ch4:5086024..5087804- >KJC3_006227-T2 ID=KJC3_006227-T2|Name=KJC3_006227-T2|organism=Aspergillus niger KJC3|type=CDS|length=2040bp|location=Sequence derived from alignment at ch4:5086024..5087804- (Aspergillus niger KJC3)
CATGCTCCCCCTTCTGCTAGTCTATGTGGCCGAATACACAATCAACCAAG
GGGTTTCTCCGACCCTGCTGTTTCCACTTAAAGATTCGCCGTTTGAACAT
TATCGTGCATTTTATCCCGCGTACAATGCGATCTATCAGGTTGGTGTTTT
CATCTCGCGATCGTCCACCCCTTTCTTTCGGATTCACGATCTTTACCTTC
CGTCACTGCTGCAAATCATCAATTTGGTCGTATTGACATTGCACGCCTTG
TTTGACTTCATCCCGAGCGTGTACATAATATTTATAGTCATCTTCTGGGA
AGGGCTATTAGGGGGGCTGGTTTATGTCAATACATTCGCCGAAATCGGGG
ACCGGGTGCCGAAGGAAGACCGAGAATTCTCGCTCGGAGCGACGACTGTC
AGCGATTCTGCCGGAATTTGTATAGCGGGCTTTCTGGGAATGGCGTTTGA
GGTCTGGTTGTGTGATTGGCAGGTCGCCCACGGTCGGGATTATTGCCGGA
AACTATGAATGCTTCTGGTGGCCCTGAGCCCAGCGTATACAGATGGCGGT
TCAATTTCCACCAAAATCGCGGGCATTATTCTGGCGAGCTTGTCGAGCGG
AGGAGGCGAACTGAGCTTCCTAGCACTGACGCACTTCTACGGCCCGTTCA
GTCTGGCAGCCTGGGGTAGTGGTACCGGAGCCGCCGGGCTGGTCGGGGCT
GGTGCGTACGCCGTCGCAACTACCTCTATGGGGCTCAGTGTCAGGTCGAC
ACTCCTAGCAGCTGCCTGCCTGCCAGCAATCATGGTTGTGAGCTTCTTCG
CCATTCTGCCAAGAGCTCCCATACGGACATTGGCCGCTGCACCTGTTGAG
TATCGTGCAATTGACCAGGAAGATCGGGATGACCTTCTGGATGAGCGGCA
CGGTCTACTCGGCTCCTCAGCTCCCCCGAGCCGAAACAAGAGGAGCGACG
CGAGTCATGAGCTCGGCTTGCAGGTGTTCAAAGCTAACCTGCAGCGAGCT
AGGGGACTTTTCTTTCCCTTCATGCTCCCCCTTCTGCTAGTCTATGTGGC
CGAATACACAATCAACCAAGGGGTTTCTCCGACCCTGCTGTTTCCACTTA
AAGATTCGCCGTTTGAACATTATCGTGCATTTTATCCCGCGTACAATGCG
ATCTATCAGGTTGGTGTTTTCATCTCGCGATCGTCCACCCCTTTCTTTCG
GATTCACGATCTTTACCTTCCGTCACTGCTGCAAATCATCAATTTGGTCG
TATTGACATTGCACGCCTTGTTTGACTTCATCCCGAGCGTGTACATAATA
TTTATAGTCATCTTCTGGGAAGGGCTATTAGGGGGGCTGGTTTATGTCAA
TACATTCGCCGAAATCGGGGACCGGGTGCCGAAGGAAGACCGAGAATTCT
CGCTCGGAGCGACGACTGTCAGCGATTCTGCCGGAATTTGTATAGCGGGC
TTTCTGGGAATGGCGTTTGAGGTCTGGTTGTGTGATTGGCAGGTCGCCCA
CGGTCGGGATTATTGCCGGAAACTATGAATGCTTCTGGTGGCCCTGAGCC
CAGCGTATACAGATGGCGGTTCAATTTCCACCAAAATCGCGGGCATTATT
CTGGCGAGCTTGTCGAGCGGAGGAGGCGAACTGAGCTTCCTAGCACTGAC
GCACTTCTACGGCCCGTTCAGTCTGGCAGCCTGGGGTAGTGGTACCGGAG
CCGCCGGGCTGGTCGGGGCTGGTGCGTACGCCGTCGCAACTACCTCTATG
GGGCTCAGTGTCAGGTCGACACTCCTAGCAGCTGCCTGCCTGCCAGCAAT
CATGGTTGTGAGCTTCTTCGCCATTCTGCCAAGAGCTCCCATACGGACAT
TGGCCGCTGCACCTGTTGAGTATCGTGCAATTGACCAGGAAGATCGGGAT
GACCTTCTGGATGAGCGGCACGGTCTACTCGGCTCCTCAGCTCCCCCGAG
CCGAAACAAGAGGAGCGACGCGAGTCATGAGCTCGGCTTGCAGGTGTTCA
AAGCTAACCTGCAGCGAGCTAGGGGACTTTTCTTTCCCTT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006227-T2.utr3p1 | KJC3_006227-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006227-T2.utr5p1 | KJC3_006227-T2.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036259 |
| DBxref | InterPro:IPR003492 |
| DBxref | PFAM:PF02487 |
| Product | variant 2 |
| Product | battenin CLN3 protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:5086024..5087804 - |
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