You are here

Home

KJC3_006230-T1, KJC3_006230-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006230-T1
Unique NameKJC3_006230-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:5090343..5092598-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006230-T1 ID=KJC3_006230-T1|Name=KJC3_006230-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2256bp|location=Sequence derived from alignment at ch4:5090343..5092598- (Aspergillus niger KJC3)
CACCACTTCTCTCCTCATTCCCAGGGAGCTGTCGCGTGGTTCGAATTCTC
ATTTTTTGTACCTAGGAGCTTCTTCTACATGAGTCACAGCTGATAGCAAT
TGCCAAAATGATGACCTTCCGACCTCGAATGAGCCTCTTCTCTGCCCTTC
GCACGGCCCCAGCTCGACGCCGCTTTGCGACTGAGGCGCGGTTAACCACG
GACCATGTCCGCATCGTCGAAGTAGGGCCACGAGATGGTCTGCAGAACGA
GAAAAAGTCGATTCCACTTGAGACCAAGCTTCAGCTTATTGAGAAGCTTG
CTAAGACAGGTGTAACCACAATTGAGGCGGGATCCTTTGTGCCGGCGAAA
TGGGTGCCCCAGGTACGGACGTCTGCTTGCATCCGAAAGGAGTAACGACG
ACGCCACCTCTCCTTGGACTACAAAACTAACAGATATATGTATGATAGAT
GGCTAGCACTGCAGAGATCTGCGAGCACCTCCTCCAGACTCCCCCACAGT
CACAGACCGCCATTGCCTACAACTACCTCGTCCCTAATGTGAGGGGTCTG
GAGAACCTGATCAAAATCATGGATGCCACAGGTGTCCCGGCAGACACGAC
AGGATCTGCCACGAAAACCCCAACAACAACCGAGATTTCTCTGTTCGCAG
CAGCAACAGAGGCGTTCTCCAAGGCCAACACAAACTGCACAATCGAGGAG
TCACTAGATCGCATCCGTCCAATCGTCTCGCTAGCAAAGACGAAGAACAT
CCGAGTGAGGGGCTATGTTTCGGTTGCTCTGGGTTGTCCGTACGAGGGTC
CGGATGTATCCCCATCCAAGGTGGCCGACATCACTGCAACGCTACTTGAA
ATGGGAGCCGATGAGGTGTCGGTGGCTGATACCACGGGCATGGGCACGGC
ACCCCGCACGATGAAGCTACTGCAGGCTCTGAAGGCGGCCGGGATTGCGA
ATAATGATCTGGCACTGCACTTCCATGATACTTATGGACAGGCTCTCGTC
AATACTATCGTAGGGCTGGAGCATGGTATCCGCATCTTCGATAGCAGTGT
TGGTGGTCTTGGTGGTTGCCCTTACTCGAAGGGTGCAACGGGGAATGTCT
CGACAGAGGACCTTGTACATACCATCCATGGTCTGGGCATGCACACTGGT
ATCAACCTGGAGGAAATGGCCAAGATTGGCTCCTGGATTAGTGGGGAGCT
GGGCCGGTTCAATGAGAGTCGTGCGGGCAAGGCCATACTGGCGCGGATGG
AAGAGTGAAATCAGTACTTGCAGATAACTTTACAGTCTTGTTAAATAACT
ACCTTAGCCATCATTCATATCTATTTGCTGATGCCATACAAGTACCTTCT
CTTGCGGCACACGCCCTAGTCATCTGAGGAAAAAGTCACAGTAAATCAGC
AGTATACTACACGATTTCAAAAAATACAAGTAGGTTATCTCGCATCAAAC
GGCCACAACCTCTCCGCCTTCTCCACCGTCATCCCCTCCTCCCCCCTATC
TTCAAACTCCCTCGCCGTCTGTATCCACTCCTCATAAGCAGCGCGATGCG
CATCCCTCGCCGCATCCCAAACATCATTCGGAATCCAGCCATCAGAGTCC
GTATTCAAAACGTCCTTAAGCCATAGCTTAAGGCCTTGGACCGCTTCAAA
GTCCTCATACTCCCTAGCATGTCTTTCCCGTTCTTCGTCCGTTAAAGAAT
ACGGACACGTTCCCTGCAATCCCAGCTCCGCCCACCGATCCGATAGCTCA
ATAAGATCCTGACGGATAGCAGCTGCACTACCTGTCCATGTCAAATGGGT
GTAGTGGAAGAGTCGGAATAAGGTCGGATCAAGGAGTCTTGCGGGTCGGA
GCTGGGGGACTAGGCCTACTAGGGCGACGTTGTAGGTTTGATGGCAGATT
GAGGCGTCTTTGCGTTCGCGTGCTGTCGTGATGGTGATAGGTGTTGTTGG
TTGTTCGTCGTCGAGGTGTGGAGGAGTGGCGAAATCGGGGGTTTCGTTGG
CGTAGATGAAGGCTGGTTCGATGCTTGTTGATTGCCAGTCTATCAAGCCA
GTGATGATAGTTGGATCTTCTAGGGAGACGTAGATGTTCCGTTTGTGATA
GTCAGGGTGCGAAAGAGCTGGCGTCGCAGCATCCTGAATGCGCTTATCTT
GGATCAATCTCTGCATAACTGCTTGGCTTGTTTTTATTAGTTGGATGTGG
TCTTGGATGGTCCCTTGGTGAGGGAGGCCATGCTTGATGGTTTTTTTTTT
TTTTTT
back to top

Coding sequence (CDS) from alignment at ch4:5090343..5092598-

>KJC3_006230-T1 ID=KJC3_006230-T1|Name=KJC3_006230-T1|organism=Aspergillus niger KJC3|type=CDS|length=2130bp|location=Sequence derived from alignment at ch4:5090343..5092598- (Aspergillus niger KJC3)
ATGGCTAGCACTGCAGAGATCTGCGAGCACCTCCTCCAGACTCCCCCACA
GTCACAGACCGCCATTGCCTACAACTACCTCGTCCCTAATGTGAGGGGTC
TGGAGAACCTGATCAAAATCATGGATGCCACAGGTGTCCCGGCAGACACG
ACAGGATCTGCCACGAAAACCCCAACAACAACCGAGATTTCTCTGTTCGC
AGCAGCAACAGAGGCGTTCTCCAAGGCCAACACAAACTGCACAATCGAGG
AGTCACTAGATCGCATCCGTCCAATCGTCTCGCTAGCAAAGACGAAGAAC
ATCCGAGTGAGGGGCTATGTTTCGGTTGCTCTGGGTTGTCCGTACGAGGG
TCCGGATGTATCCCCATCCAAGGTGGCCGACATCACTGCAACGCTACTTG
AAATGGGAGCCGATGAGGTGTCGGTGGCTGATACCACGGGCATGGGCACG
GCACCCCGCACGATGAAGCTACTGCAGGCTCTGAAGGCGGCCGGGATTGC
GAATAATGATCTGGCACTGCACTTCCATGATACTTATGGACAGGCTCTCG
TCAATACTATCGTAGGGCTGGAGCATGGTATCCGCATCTTCGATAGCAGT
GTTGGTGGTCTTGGTGGTTGCCCTTACTCGAAGGGTGCAACGGGGAATGT
CTCGACAGAGGACCTTGTACATACCATCCATGGTCTGGGCATGCACACTG
GTATCAACCTGGAGGAAATGGCCAAGATTGGCTCCTGGATTAGTGGGGAG
CTGGGCCGGTTCAATGAGAGTCGTGCGGGCAAGGCCATACTGGCGCGGAT
GGAAGAGTGAATGATGACCTTCCGACCTCGAATGAGCCTCTTCTCTGCCC
TTCGCACGGCCCCAGCTCGACGCCGCTTTGCGACTGAGGCGCGGTTAACC
ACGGACCATGTCCGCATCGTCGAAGTAGGGCCACGAGATGGTCTGCAGAA
CGAGAAAAAGTCGATTCCACTTGAGACCAAGCTTCAGCTTATTGAGAAGC
TTGCTAAGACAGGTGTAACCACAATTGAGGCGGGATCCTTTGTGCCGGCG
AAATGGGTGCCCCAGATGGCTAGCACTGCAGAGATCTGCGAGCACCTCCT
CCAGACTCCCCCACAGTCACAGACCGCCATTGCCTACAACTACCTCGTCC
CTAATGTGAGGGGTCTGGAGAACCTGATCAAAATCATGGATGCCACAGGT
GTCCCGGCAGACACGACAGGATCTGCCACGAAAACCCCAACAACAACCGA
GATTTCTCTGTTCGCAGCAGCAACAGAGGCGTTCTCCAAGGCCAACACAA
ACTGCACAATCGAGGAGTCACTAGATCGCATCCGTCCAATCGTCTCGCTA
GCAAAGACGAAGAACATCCGAGTGAGGGGCTATGTTTCGGTTGCTCTGGG
TTGTCCGTACGAGGGTCCGGATGTATCCCCATCCAAGGTGGCCGACATCA
CTGCAACGCTACTTGAAATGGGAGCCGATGAGGTGTCGGTGGCTGATACC
ACGGGCATGGGCACGGCACCCCGCACGATGAAGCTACTGCAGGCTCTGAA
GGCGGCCGGGATTGCGAATAATGATCTGGCACTGCACTTCCATGATACTT
ATGGACAGGCTCTCGTCAATACTATCGTAGGGCTGGAGCATGGTATCCGC
ATCTTCGATAGCAGTGTTGGTGGTCTTGGTGGTTGCCCTTACTCGAAGGG
TGCAACGGGGAATGTCTCGACAGAGGACCTTGTACATACCATCCATGGTC
TGGGCATGCACACTGGTATCAACCTGGAGGAAATGGCCAAGATTGGCTCC
TGGATTAGTGGGGAGCTGGGCCGGTTCAATGAGAGTCGTGCGGGCAAGGC
CATACTGGCGCGGATGGAAGAGTGAATGATGACCTTCCGACCTCGAATGA
GCCTCTTCTCTGCCCTTCGCACGGCCCCAGCTCGACGCCGCTTTGCGACT
GAGGCGCGGTTAACCACGGACCATGTCCGCATCGTCGAAGTAGGGCCACG
AGATGGTCTGCAGAACGAGAAAAAGTCGATTCCACTTGAGACCAAGCTTC
AGCTTATTGAGAAGCTTGCTAAGACAGGTGTAACCACAATTGAGGCGGGA
TCCTTTGTGCCGGCGAAATGGGTGCCCCAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_006230KJC3_006230Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006230-T1KJC3_006230-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006230-T1.cdsKJC3_006230-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006230-T1.utr3p1KJC3_006230-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006230-T1.exon2KJC3_006230-T1.exon2Aspergillus niger KJC3exon
KJC3_006230-T1.exon1KJC3_006230-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006230-T1.utr5p1KJC3_006230-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR013785
DBxrefInterPro:IPR000891
DBxrefPFAM:PF00682
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:5090343..5092598 -
Powered by Drupal