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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:5112316..5114469- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006237-T1 ID=KJC3_006237-T1|Name=KJC3_006237-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2154bp|location=Sequence derived from alignment at ch4:5112316..5114469- (Aspergillus niger KJC3)
TGTCCGTCTTCCTCTCCTCGTCCCCAGTTCACCAACCAAGATAACCCGTG
ACGAGGGTATCAATTGACCATGACGACCAAATCTAAAGATGTCGAGCTGT
CTGACGACATCCAATTCATCGAAACTCCCGCACCAGCTCCCCCCAAGTTT
GAAACCGGCGAGAGCTGTGGAGTCGCCCTGACCAATGTCAATTCCTCCCT
CCCAATTGCTGGCATATTGCCTACCTGTCCAAAACCGTGCTGACCTCTAC
CAAAGGCCAAGAGTATTAACAATCCTCCCCTGCCGGCAGATGGTCCTGGA
AACGAGAGCTTCTCCAACCTCCTGTTGGGCGGCGCCATCATCGGAGCCCC
CGGCTTTTTGACCTACCTGCTCGGCGGTGGAAAGAAAACTTTCGTCTTCT
TCACTCTGGTAACTGTTCTACCTGTCCTCGTGGCCTTCTGGACCTACACC
TCGACCTTCAGCCCTCGCACCAACGAGAAAGTGAAGCTCCCTGGCCGTCC
CGTTGAGCACTACATCACCTTCAAGCGCGACGAAGACCGTGCGAAATGGA
GCGGAAGGAACAAGATCCCCATGCAAACCTTTTCGGAAATGTACCTGGAC
GGCCTGGTTGACTTCAACGGCGACGTGCTTGAGATCCTGGAATACCGCCA
CGACTGGGCCAGCTTCGCCTTCACCTGGGACCTGTTCAAGTTCATCGTCG
GCACCTTCTTCGTCGATGTGCTTTTCCACACCAAGGCCCAGGATGAGGAG
CAAATCCGTCCCAACTACGACCGAGGTAACGACCACTACGCCTGGTTCCT
CGGCCCTCGCATGATCTACACCTCCGGAATCATCTCCGACCCCGATCGTG
AAGAAACCCTGGAGGAACTGCAGGATAACAAGATGGCTGTTGTTTGCGAG
AAGATCGGCCTCAAGGAAGGCGAGACCATGCTGGACATTGGCTGCGGCTG
GGGTACTCTGGCCAAGTTCGCCAGTCTCAACTACGGTGCAAAGGTGACCG
GTCTCACTATTGCTGAGAACCAGACTGCCTGGGGTAACGATGCTCTCCGT
AAGGCCGGCATCTCCGAGGAACAGAGCCGCATTGTCTGCATGGATTACCG
CGATATCCCCCGCACGAAATACGACAAGATCACTCAGCTGGAAATGGGCG
AGCACGTCGGTATTCGCAAGCTTACTGGGTTCTTCCGCCAGTGCTATGAT
ATGCTTAACGATGATGGATGCATGTACGTGCAGCTTTCGGGTCTGAGACA
GGCATGGCAGTACGAGGATTTCATCTGGGGTCTGTATCTGAACAAGTACA
TCTTCCGTGGCGCGGACGCTTCTACTCCTCTGTGGTACTACGTCAAGTGT
CTTGAAGGAGCTGGCTTCGAAGTCAAGGGGTAAGCCACCTTTCCTGCCGC
CCCCCTTTCACCAACCAAACACTAACATCAAATCTGCGAATAGTATTGAC
ACTGTCGGCGTCCACTACTCCGGCACCCTCTGGAGATGGTACCGCAACTG
GGTCGGCAACATCGAGGCAATCAAGGCCAAGTACGGTCCCAGATGGTACA
GGGTGCGTATATCCTCCTCCCCTTCTCCCTCTACTTCTCCTTATTCCCAA
ACACCTCTAACACTGTATTCCAACCTAAACAGATCTGGGAACTCTTCCTC
GCCTGGTCCGTCATCGCCTCCCGCCAAGGTTCCGCAACCTGCTACCAGAT
GGTGGTGGTCAAGAACCTGAACTCGACGCACCGTATTACCGGAGTGTCCA
ACCAGTATGGTCTTATGGGTGCTCTCGCTAAGAGCAGGGAGGCGGGCAAG
TCCCGTCTGCCTTAGACCTCAGATTGATTTGTCTCTGTGAGAATTAAATC
TAGATGACGGGTTGGACGGATACGTAATGTCATGTTATGTATGAAATATG
TTCATGAAACGAGATGAAGCGGGGGTGGATGGAAGGATCTATGGTGCTTT
GGATATGTGATAGATACTATGATTTATGCACTATGGTCTATTGAAGGAAT
CCGCAACGCTAGTACTGGATGTGGTAGCGCTGCGATGGGATAGGATCACG
AGGACTAGGATTCTTATGACTAGATAGATATATTAGATGAATGGAAAGAT
TTAAAGTAGAGATTGAGGGACCTGGCACGGGGTTCATCTACCCTTATTAT
CTTG back to topCoding sequence (CDS) from alignment at ch4:5112316..5114469- >KJC3_006237-T1 ID=KJC3_006237-T1|Name=KJC3_006237-T1|organism=Aspergillus niger KJC3|type=CDS|length=6132bp|location=Sequence derived from alignment at ch4:5112316..5114469- (Aspergillus niger KJC3)
ATCTGGGAACTCTTCCTCGCCTGGTCCGTCATCGCCTCCCGCCAAGGTTC
CGCAACCTGCTACCAGATGGTGGTGGTCAAGAACCTGAACTCGACGCACC
GTATTACCGGAGTGTCCAACCAGTATGGTCTTATGGGTGCTCTCGCTAAG
AGCAGGGAGGCGGGCAAGTCCCGTCTGCCTTAGTATTGACACTGTCGGCG
TCCACTACTCCGGCACCCTCTGGAGATGGTACCGCAACTGGGTCGGCAAC
ATCGAGGCAATCAAGGCCAAGTACGGTCCCAGATGGTACAGGGCCAAGAG
TATTAACAATCCTCCCCTGCCGGCAGATGGTCCTGGAAACGAGAGCTTCT
CCAACCTCCTGTTGGGCGGCGCCATCATCGGAGCCCCCGGCTTTTTGACC
TACCTGCTCGGCGGTGGAAAGAAAACTTTCGTCTTCTTCACTCTGGTAAC
TGTTCTACCTGTCCTCGTGGCCTTCTGGACCTACACCTCGACCTTCAGCC
CTCGCACCAACGAGAAAGTGAAGCTCCCTGGCCGTCCCGTTGAGCACTAC
ATCACCTTCAAGCGCGACGAAGACCGTGCGAAATGGAGCGGAAGGAACAA
GATCCCCATGCAAACCTTTTCGGAAATGTACCTGGACGGCCTGGTTGACT
TCAACGGCGACGTGCTTGAGATCCTGGAATACCGCCACGACTGGGCCAGC
TTCGCCTTCACCTGGGACCTGTTCAAGTTCATCGTCGGCACCTTCTTCGT
CGATGTGCTTTTCCACACCAAGGCCCAGGATGAGGAGCAAATCCGTCCCA
ACTACGACCGAGGTAACGACCACTACGCCTGGTTCCTCGGCCCTCGCATG
ATCTACACCTCCGGAATCATCTCCGACCCCGATCGTGAAGAAACCCTGGA
GGAACTGCAGGATAACAAGATGGCTGTTGTTTGCGAGAAGATCGGCCTCA
AGGAAGGCGAGACCATGCTGGACATTGGCTGCGGCTGGGGTACTCTGGCC
AAGTTCGCCAGTCTCAACTACGGTGCAAAGGTGACCGGTCTCACTATTGC
TGAGAACCAGACTGCCTGGGGTAACGATGCTCTCCGTAAGGCCGGCATCT
CCGAGGAACAGAGCCGCATTGTCTGCATGGATTACCGCGATATCCCCCGC
ACGAAATACGACAAGATCACTCAGCTGGAAATGGGCGAGCACGTCGGTAT
TCGCAAGCTTACTGGGTTCTTCCGCCAGTGCTATGATATGCTTAACGATG
ATGGATGCATGTACGTGCAGCTTTCGGGTCTGAGACAGGCATGGCAGTAC
GAGGATTTCATCTGGGGTCTGTATCTGAACAAGTACATCTTCCGTGGCGC
GGACGCTTCTACTCCTCTGTGGTACTACGTCAAGTGTCTTGAAGGAGCTG
GCTTCGAAGTCAAGGGATGACGACCAAATCTAAAGATGTCGAGCTGTCTG
ACGACATCCAATTCATCGAAACTCCCGCACCAGCTCCCCCCAAGTTTGAA
ACCGGCGAGAGCTGTGGAGTCGCCCTGACCAATATCTGGGAACTCTTCCT
CGCCTGGTCCGTCATCGCCTCCCGCCAAGGTTCCGCAACCTGCTACCAGA
TGGTGGTGGTCAAGAACCTGAACTCGACGCACCGTATTACCGGAGTGTCC
AACCAGTATGGTCTTATGGGTGCTCTCGCTAAGAGCAGGGAGGCGGGCAA
GTCCCGTCTGCCTTAGTATTGACACTGTCGGCGTCCACTACTCCGGCACC
CTCTGGAGATGGTACCGCAACTGGGTCGGCAACATCGAGGCAATCAAGGC
CAAGTACGGTCCCAGATGGTACAGGGCCAAGAGTATTAACAATCCTCCCC
TGCCGGCAGATGGTCCTGGAAACGAGAGCTTCTCCAACCTCCTGTTGGGC
GGCGCCATCATCGGAGCCCCCGGCTTTTTGACCTACCTGCTCGGCGGTGG
AAAGAAAACTTTCGTCTTCTTCACTCTGGTAACTGTTCTACCTGTCCTCG
TGGCCTTCTGGACCTACACCTCGACCTTCAGCCCTCGCACCAACGAGAAA
GTGAAGCTCCCTGGCCGTCCCGTTGAGCACTACATCACCTTCAAGCGCGA
CGAAGACCGTGCGAAATGGAGCGGAAGGAACAAGATCCCCATGCAAACCT
TTTCGGAAATGTACCTGGACGGCCTGGTTGACTTCAACGGCGACGTGCTT
GAGATCCTGGAATACCGCCACGACTGGGCCAGCTTCGCCTTCACCTGGGA
CCTGTTCAAGTTCATCGTCGGCACCTTCTTCGTCGATGTGCTTTTCCACA
CCAAGGCCCAGGATGAGGAGCAAATCCGTCCCAACTACGACCGAGGTAAC
GACCACTACGCCTGGTTCCTCGGCCCTCGCATGATCTACACCTCCGGAAT
CATCTCCGACCCCGATCGTGAAGAAACCCTGGAGGAACTGCAGGATAACA
AGATGGCTGTTGTTTGCGAGAAGATCGGCCTCAAGGAAGGCGAGACCATG
CTGGACATTGGCTGCGGCTGGGGTACTCTGGCCAAGTTCGCCAGTCTCAA
CTACGGTGCAAAGGTGACCGGTCTCACTATTGCTGAGAACCAGACTGCCT
GGGGTAACGATGCTCTCCGTAAGGCCGGCATCTCCGAGGAACAGAGCCGC
ATTGTCTGCATGGATTACCGCGATATCCCCCGCACGAAATACGACAAGAT
CACTCAGCTGGAAATGGGCGAGCACGTCGGTATTCGCAAGCTTACTGGGT
TCTTCCGCCAGTGCTATGATATGCTTAACGATGATGGATGCATGTACGTG
CAGCTTTCGGGTCTGAGACAGGCATGGCAGTACGAGGATTTCATCTGGGG
TCTGTATCTGAACAAGTACATCTTCCGTGGCGCGGACGCTTCTACTCCTC
TGTGGTACTACGTCAAGTGTCTTGAAGGAGCTGGCTTCGAAGTCAAGGGA
TGACGACCAAATCTAAAGATGTCGAGCTGTCTGACGACATCCAATTCATC
GAAACTCCCGCACCAGCTCCCCCCAAGTTTGAAACCGGCGAGAGCTGTGG
AGTCGCCCTGACCAATATCTGGGAACTCTTCCTCGCCTGGTCCGTCATCG
CCTCCCGCCAAGGTTCCGCAACCTGCTACCAGATGGTGGTGGTCAAGAAC
CTGAACTCGACGCACCGTATTACCGGAGTGTCCAACCAGTATGGTCTTAT
GGGTGCTCTCGCTAAGAGCAGGGAGGCGGGCAAGTCCCGTCTGCCTTAGT
ATTGACACTGTCGGCGTCCACTACTCCGGCACCCTCTGGAGATGGTACCG
CAACTGGGTCGGCAACATCGAGGCAATCAAGGCCAAGTACGGTCCCAGAT
GGTACAGGGCCAAGAGTATTAACAATCCTCCCCTGCCGGCAGATGGTCCT
GGAAACGAGAGCTTCTCCAACCTCCTGTTGGGCGGCGCCATCATCGGAGC
CCCCGGCTTTTTGACCTACCTGCTCGGCGGTGGAAAGAAAACTTTCGTCT
TCTTCACTCTGGTAACTGTTCTACCTGTCCTCGTGGCCTTCTGGACCTAC
ACCTCGACCTTCAGCCCTCGCACCAACGAGAAAGTGAAGCTCCCTGGCCG
TCCCGTTGAGCACTACATCACCTTCAAGCGCGACGAAGACCGTGCGAAAT
GGAGCGGAAGGAACAAGATCCCCATGCAAACCTTTTCGGAAATGTACCTG
GACGGCCTGGTTGACTTCAACGGCGACGTGCTTGAGATCCTGGAATACCG
CCACGACTGGGCCAGCTTCGCCTTCACCTGGGACCTGTTCAAGTTCATCG
TCGGCACCTTCTTCGTCGATGTGCTTTTCCACACCAAGGCCCAGGATGAG
GAGCAAATCCGTCCCAACTACGACCGAGGTAACGACCACTACGCCTGGTT
CCTCGGCCCTCGCATGATCTACACCTCCGGAATCATCTCCGACCCCGATC
GTGAAGAAACCCTGGAGGAACTGCAGGATAACAAGATGGCTGTTGTTTGC
GAGAAGATCGGCCTCAAGGAAGGCGAGACCATGCTGGACATTGGCTGCGG
CTGGGGTACTCTGGCCAAGTTCGCCAGTCTCAACTACGGTGCAAAGGTGA
CCGGTCTCACTATTGCTGAGAACCAGACTGCCTGGGGTAACGATGCTCTC
CGTAAGGCCGGCATCTCCGAGGAACAGAGCCGCATTGTCTGCATGGATTA
CCGCGATATCCCCCGCACGAAATACGACAAGATCACTCAGCTGGAAATGG
GCGAGCACGTCGGTATTCGCAAGCTTACTGGGTTCTTCCGCCAGTGCTAT
GATATGCTTAACGATGATGGATGCATGTACGTGCAGCTTTCGGGTCTGAG
ACAGGCATGGCAGTACGAGGATTTCATCTGGGGTCTGTATCTGAACAAGT
ACATCTTCCGTGGCGCGGACGCTTCTACTCCTCTGTGGTACTACGTCAAG
TGTCTTGAAGGAGCTGGCTTCGAAGTCAAGGGATGACGACCAAATCTAAA
GATGTCGAGCTGTCTGACGACATCCAATTCATCGAAACTCCCGCACCAGC
TCCCCCCAAGTTTGAAACCGGCGAGAGCTGTGGAGTCGCCCTGACCAATA
TCTGGGAACTCTTCCTCGCCTGGTCCGTCATCGCCTCCCGCCAAGGTTCC
GCAACCTGCTACCAGATGGTGGTGGTCAAGAACCTGAACTCGACGCACCG
TATTACCGGAGTGTCCAACCAGTATGGTCTTATGGGTGCTCTCGCTAAGA
GCAGGGAGGCGGGCAAGTCCCGTCTGCCTTAGTATTGACACTGTCGGCGT
CCACTACTCCGGCACCCTCTGGAGATGGTACCGCAACTGGGTCGGCAACA
TCGAGGCAATCAAGGCCAAGTACGGTCCCAGATGGTACAGGGCCAAGAGT
ATTAACAATCCTCCCCTGCCGGCAGATGGTCCTGGAAACGAGAGCTTCTC
CAACCTCCTGTTGGGCGGCGCCATCATCGGAGCCCCCGGCTTTTTGACCT
ACCTGCTCGGCGGTGGAAAGAAAACTTTCGTCTTCTTCACTCTGGTAACT
GTTCTACCTGTCCTCGTGGCCTTCTGGACCTACACCTCGACCTTCAGCCC
TCGCACCAACGAGAAAGTGAAGCTCCCTGGCCGTCCCGTTGAGCACTACA
TCACCTTCAAGCGCGACGAAGACCGTGCGAAATGGAGCGGAAGGAACAAG
ATCCCCATGCAAACCTTTTCGGAAATGTACCTGGACGGCCTGGTTGACTT
CAACGGCGACGTGCTTGAGATCCTGGAATACCGCCACGACTGGGCCAGCT
TCGCCTTCACCTGGGACCTGTTCAAGTTCATCGTCGGCACCTTCTTCGTC
GATGTGCTTTTCCACACCAAGGCCCAGGATGAGGAGCAAATCCGTCCCAA
CTACGACCGAGGTAACGACCACTACGCCTGGTTCCTCGGCCCTCGCATGA
TCTACACCTCCGGAATCATCTCCGACCCCGATCGTGAAGAAACCCTGGAG
GAACTGCAGGATAACAAGATGGCTGTTGTTTGCGAGAAGATCGGCCTCAA
GGAAGGCGAGACCATGCTGGACATTGGCTGCGGCTGGGGTACTCTGGCCA
AGTTCGCCAGTCTCAACTACGGTGCAAAGGTGACCGGTCTCACTATTGCT
GAGAACCAGACTGCCTGGGGTAACGATGCTCTCCGTAAGGCCGGCATCTC
CGAGGAACAGAGCCGCATTGTCTGCATGGATTACCGCGATATCCCCCGCA
CGAAATACGACAAGATCACTCAGCTGGAAATGGGCGAGCACGTCGGTATT
CGCAAGCTTACTGGGTTCTTCCGCCAGTGCTATGATATGCTTAACGATGA
TGGATGCATGTACGTGCAGCTTTCGGGTCTGAGACAGGCATGGCAGTACG
AGGATTTCATCTGGGGTCTGTATCTGAACAAGTACATCTTCCGTGGCGCG
GACGCTTCTACTCCTCTGTGGTACTACGTCAAGTGTCTTGAAGGAGCTGG
CTTCGAAGTCAAGGGATGACGACCAAATCTAAAGATGTCGAGCTGTCTGA
CGACATCCAATTCATCGAAACTCCCGCACCAGCTCCCCCCAAGTTTGAAA
CCGGCGAGAGCTGTGGAGTCGCCCTGACCAAT back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006237-T1.utr3p1 | KJC3_006237-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006237-T1.utr5p1 | KJC3_006237-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR029063 |
| DBxref | PFAM:PF13649 |
| DBxref | PFAM:PF13489 |
| DBxref | PFAM:PF08241 |
| DBxref | PFAM:PF02353 |
| Product | Sphingolipid C9-methyltransferase 1 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:5112316..5114469 - |
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