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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:5139595..5141563+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006247-T1 ID=KJC3_006247-T1|Name=KJC3_006247-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1969bp|location=Sequence derived from alignment at ch4:5139595..5141563+ (Aspergillus niger KJC3)
CACTCTCCCTCCATGCATAATTCTATAGCGAAATTACAGGCATAATCCTT
ATCTTTTCCCAATCAATCTACTACTACTACTACTACTACTCTGAACCCAT
CCATGACCATGACCCTCACAGCAATCCCCGCCAGCGAGCCCTACTTCAAC
CTCGGCGCCTACTCGCGAAACGTCACCACCACCAGCGAAGATGCGCGCAT
CTGGTTCAATCGCGGCCTCATCTGGGTCTACTCCTTCCACCACGGCGAAG
CCGTGCACTGCTTCGAGCAAGCCATAGCCCACGATCCCACCTTCGCCATG
GGCCACTGGGGTCTCGCCTACGCGGTAGGCCCCAACTACAACAAAGCTTG
GGAGCGCTTCGACCGCAAAGACCTTCACACCTGCGTACAACGCGGCCATG
AAGCCTCACGTAAAGCTCTCGCTCTCTCCCAATCCACCAACGCCACTCCT
CTCGAGCAAGGCCTCTGCAAAGCCATAACCGAGCGCTTCCCAACCCCGAC
TCCCCTCCAACTCGAAACCTACAGCGCCGTCAACCGGGCCTACGCCGCCG
CCATGAAGCCCATCTACGAATGCTTCCCTAACGACCTCGACATGGCCGTT
CTCTACGCCGACGCCCTCATGAATATCACCCCCTGGGCCCTCTGGGACCT
CTTCACAGCCCAACCCAACCCCAAAGCTCCCACCAAGGAAGTCCAATCTG
TCCTCGAATCCGCTCTCACCTCCCACCCCCACGGACAAGCCTACTCCCAC
CCAGGCCTCCTCCACCTCTACATCCACTACATCGAAATGTCTCCGACCCC
AGAAAAGGGCATCTACGCCGCCGACCACCTCCGTGATCTTGTCCCCGACG
CCGGCCACATCCACCACATGCCCACGCACCTCGACATCCTGATCGGCGAC
TGGCGCGCCTCTATCCGGTCCAACTACCGCTCCACTCTCGCGGATGACCG
CTACGCTGCTAAAGCCGGCCACAACAACTTCTACACCTTCTACCGCCTCC
ACGATTACCATTCCCTTATCTACGCCGCCATGTTCGCAGCACAGAAACGT
ACCGCCCTCGATGCCGTCTCTCGCATGGAAGCCAGCATCCCAGAGTCTCT
CCTGCGCATGAAATCGCCCCCTATGGCTGACTGGATCGAGCACTTCGTCG
CAATCCGTCTGCATGTCATGGTCCGTTTTGGGATGTGGGAGGAGCTTATC
AATGACACCTCTCTCCCGGAGGACCAGGAGCTGTATGCCATCACGACAGC
CACAACCCACTATGCCCGTGCCCTCGCCTACGCCGCGACCAACGACGTGC
CCTCCGCCCGTACCGAAGAAGCCCTATTTCTCGCAGCCCGGGAGCGCGTC
CCTGCTACCCGCCGCGCGTATAATAGTAAAGCCCGCGATATGCTGGCGGT
GGGAGCTGCTATGCTGAAGGGGGAGATAGAGTACCGAGCAAGGAACTATG
AGACGGCATTTGCGGCGTTGAACGAGGCGATTGTGTTGGAGGATCAGTTG
CCGTATAGTGAGCCATGGGCGTGGATGCAGCCTGTTAGACATGCTTATGC
GGCGTTGAAGCTGGAGCAAGGGGAAGTGGAGGAGGCGGCGAGGGTGTATA
AGGCTGATTTGGGGCTGGATGAGTCGTTGATTCGTCCCAGGAGACATCCG
AATAATGTTTGGGCGTTGCATGGGTATCATGAGTGTTTGGAGAGGTTGGG
GAGGGTCGAAGAGGCCAAGGCGATTGAGGGCGCGAGGAACGTGGCGTTGG
CCGGGGCGGATGTGCCGATTTTGGCGTCGTGCTTTTGTAGGTTGGAGGTT
TTGAAGGAGAAGGAGAATGGCGCGTGTTGTGGGGGGAATGGGGATGGTCC
TGCGCTTTGAAAAGGAGGGGGTGGGAAAGGAAGGATAGGATGCTTTTTCT
AGAGGGATTGCGAGGGTTACAAAAATTTCTTTTGGCTTGAAGAGGGATTC
AATATCATCATGGTAGTGG back to topCoding sequence (CDS) from alignment at ch4:5139595..5141563+ >KJC3_006247-T1 ID=KJC3_006247-T1|Name=KJC3_006247-T1|organism=Aspergillus niger KJC3|type=CDS|length=1758bp|location=Sequence derived from alignment at ch4:5139595..5141563+ (Aspergillus niger KJC3)
ATGACCATGACCCTCACAGCAATCCCCGCCAGCGAGCCCTACTTCAACCT
CGGCGCCTACTCGCGAAACGTCACCACCACCAGCGAAGATGCGCGCATCT
GGTTCAATCGCGGCCTCATCTGGGTCTACTCCTTCCACCACGGCGAAGCC
GTGCACTGCTTCGAGCAAGCCATAGCCCACGATCCCACCTTCGCCATGGG
CCACTGGGGTCTCGCCTACGCGGTAGGCCCCAACTACAACAAAGCTTGGG
AGCGCTTCGACCGCAAAGACCTTCACACCTGCGTACAACGCGGCCATGAA
GCCTCACGTAAAGCTCTCGCTCTCTCCCAATCCACCAACGCCACTCCTCT
CGAGCAAGGCCTCTGCAAAGCCATAACCGAGCGCTTCCCAACCCCGACTC
CCCTCCAACTCGAAACCTACAGCGCCGTCAACCGGGCCTACGCCGCCGCC
ATGAAGCCCATCTACGAATGCTTCCCTAACGACCTCGACATGGCCGTTCT
CTACGCCGACGCCCTCATGAATATCACCCCCTGGGCCCTCTGGGACCTCT
TCACAGCCCAACCCAACCCCAAAGCTCCCACCAAGGAAGTCCAATCTGTC
CTCGAATCCGCTCTCACCTCCCACCCCCACGGACAAGCCTACTCCCACCC
AGGCCTCCTCCACCTCTACATCCACTACATCGAAATGTCTCCGACCCCAG
AAAAGGGCATCTACGCCGCCGACCACCTCCGTGATCTTGTCCCCGACGCC
GGCCACATCCACCACATGCCCACGCACCTCGACATCCTGATCGGCGACTG
GCGCGCCTCTATCCGGTCCAACTACCGCTCCACTCTCGCGGATGACCGCT
ACGCTGCTAAAGCCGGCCACAACAACTTCTACACCTTCTACCGCCTCCAC
GATTACCATTCCCTTATCTACGCCGCCATGTTCGCAGCACAGAAACGTAC
CGCCCTCGATGCCGTCTCTCGCATGGAAGCCAGCATCCCAGAGTCTCTCC
TGCGCATGAAATCGCCCCCTATGGCTGACTGGATCGAGCACTTCGTCGCA
ATCCGTCTGCATGTCATGGTCCGTTTTGGGATGTGGGAGGAGCTTATCAA
TGACACCTCTCTCCCGGAGGACCAGGAGCTGTATGCCATCACGACAGCCA
CAACCCACTATGCCCGTGCCCTCGCCTACGCCGCGACCAACGACGTGCCC
TCCGCCCGTACCGAAGAAGCCCTATTTCTCGCAGCCCGGGAGCGCGTCCC
TGCTACCCGCCGCGCGTATAATAGTAAAGCCCGCGATATGCTGGCGGTGG
GAGCTGCTATGCTGAAGGGGGAGATAGAGTACCGAGCAAGGAACTATGAG
ACGGCATTTGCGGCGTTGAACGAGGCGATTGTGTTGGAGGATCAGTTGCC
GTATAGTGAGCCATGGGCGTGGATGCAGCCTGTTAGACATGCTTATGCGG
CGTTGAAGCTGGAGCAAGGGGAAGTGGAGGAGGCGGCGAGGGTGTATAAG
GCTGATTTGGGGCTGGATGAGTCGTTGATTCGTCCCAGGAGACATCCGAA
TAATGTTTGGGCGTTGCATGGGTATCATGAGTGTTTGGAGAGGTTGGGGA
GGGTCGAAGAGGCCAAGGCGATTGAGGGCGCGAGGAACGTGGCGTTGGCC
GGGGCGGATGTGCCGATTTTGGCGTCGTGCTTTTGTAGGTTGGAGGTTTT
GAAGGAGAAGGAGAATGGCGCGTGTTGTGGGGGGAATGGGGATGGTCCTG
CGCTTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006247-T1.utr5p1 | KJC3_006247-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006247-T1.utr3p1 | KJC3_006247-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR013105 |
| DBxref | InterPro:IPR011990 |
| DBxref | InterPro:IPR019734 |
| DBxref | PFAM:PF07719 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:5139595..5141563 + |
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