|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:5202294..5204418+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006270-T1 ID=KJC3_006270-T1|Name=KJC3_006270-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2125bp|location=Sequence derived from alignment at ch4:5202294..5204418+ (Aspergillus niger KJC3)
CCTCCTTCTCTCTCCTGTCCAATTTTATCTGTCCACCGTTACCAAAAGAT
CGTCTGCCGTGTAATTCGCCAATCATTTGCAGATTATGCTCTAAGCAGTG
TCTCATCCCTCCACCCCCTATCCCACCATGGTCACCACAGAATCCTCTCC
GCTCCTCCCCCAGCATCATCTCCCGAATCCCTCCAATACGTCACCGCGAG
GAAACCGTCCGCCGCGGACAGTGACCTTCAACCCATTGGCGACTGTCAGC
ACTTACCATGACTCGACCTCCGCCGATCCCACGTTTAGACCTCTTCAGTC
CGGCTCCTCATCTGCACCGCATTCTCAGGAGAGCCATTACCGACCGACCG
GCCTCTCCGCCCTGAATAGCAAGCTCCGCCGGCGGAACAGCCATGGCGCT
CCGTTCAGCACCGCAAACACCCCAATCGCTGCAGCCCCCAAAGTCGGACC
GCAAAGAACGACGAAAAATGCCCAAAAACTCAAACTGCTTCCCGATCCGG
TGACTGAGGCCGAGGAGGAGCTTGGTGGAGATGACTTTCCGTCCGATGTC
TATTCGCAGATTGCCCGGATCAAAGAACCCACGGCGAGGAGTCATGCTGC
AAAGTTAGGAAAGGCCGACAGAGAGCGTCTGCCGCGAGTGACTGCCTACT
GCACAGCCAATTCTTATCGACTGGAGGGAATAATCAAGTTTCTCAAGTCT
CGTTCTAAAACCCGCGGGGCCAACCCGAAGCTCTACGACGAATGTGTCTA
CTCTCCATATGACTACGGCTATGAGGAAAAGCAGAATGGCACATGGGGTC
TTTCGAATAATGGAATGGGCATGGCGGATAGTCACCCTGGTCAACGGCCG
TCCAATGAGCGCCGCTACTCGGACAGTGTGGTTGAGGTTCAGGATAACAC
CAATGCTCGACGGGAAGACCTCATAGATCTACGGGACTCTCAATCCCACT
CCACCGATATAGATCACGCTTCGAGTACTGCTGTGTCAGAAAACCAAGGA
GATGTACATCCCGACTTCGACACGACGATCCATACCCCTGAAGTGTTTCT
CTTTGATTACGGCACAGTCGTCATATGGGGCATGTCACCTGCACACGAGT
CACGATTCTTATCCGATGTTTCCAAATTTGCCGCTTCCATCCTCAGCCCC
GAAGATACCCAGGTTGAGAACTTCAATTTCTACTATGCTCGCGAATATCA
AGCCCGGATATACAACGACTTTATCTCTCTGCGCGATCCGCGTAACCACA
TGATCAAACTGGCCATCTCCCACGCATTGGCTCAATCCGTCAAGACCTCC
CTATTCGAAGACCTCGTATCCGAGACCATCTCCAACACCGCACCCCTACC
CGCCCAGATCGCCCAGACAGGAAGTGTCAACCTCACCCGCCGCCAGATCA
ACATGCAAATCGGCGAATTGTTCATCCTCCGGATCAACATTCACCTGCAA
GGCTCGGTTCTAGACTCTCCAGAACTTATGTGGGCCGAGCCCCAACTAGA
ACCGGTTTACCAGGCCGTCCGCAGTTACCTTGAAATGGACCAGCGCGTAA
GCCTGCTCACCGAACGACTGGACGTAATAGCGGATCTTCTCGCCGTCCTC
AAAGATCAATTAACTCACCGCCACGGTGAGTATCTTGAATGGATCGGTAA
GCCCCTCCCCCGGCGCCCCCTGCATTAACCCGTTCTAATCGACTAACACA
CATGACAGTAATTGTTCTTATTGCGGCAGAAATTCTGGTCGCAGCTATCA
ACATCGTAGTTGACTTGTACGCTGGCGTGGAGTGAACACTACCTACCCTT
CCTACTAACTATTACTTCTACTACTACTATCACTATTGCCTTGTTTCTAT
TCACCCGACAAACAACCTTTGCTACACATCTACATCCCCATCACCACGAC
ACTACACCATACTACACTGAGTGTTCTCTTTCAGTATTTGTTCACTTCAG
CGGAGTTAAGGGGTTAGGCATACATCTATCAAAGTGGGAATAGGAGTGAA
AGTGGGAATTAAAGCAAGCCCTCCTTGCATCGCTACGGACAATGCATATC
TATCTATATTTAGTATCTAGTATCCAGTTTCCTCTACATAGCACACGATA
GCTTATCTTAGGCTGTATATTACAC back to topCoding sequence (CDS) from alignment at ch4:5202294..5204418+ >KJC3_006270-T1 ID=KJC3_006270-T1|Name=KJC3_006270-T1|organism=Aspergillus niger KJC3|type=CDS|length=3192bp|location=Sequence derived from alignment at ch4:5202294..5204418+ (Aspergillus niger KJC3)
ATGGTCACCACAGAATCCTCTCCGCTCCTCCCCCAGCATCATCTCCCGAA
TCCCTCCAATACGTCACCGCGAGGAAACCGTCCGCCGCGGACAGTGACCT
TCAACCCATTGGCGACTGTCAGCACTTACCATGACTCGACCTCCGCCGAT
CCCACGTTTAGACCTCTTCAGTCCGGCTCCTCATCTGCACCGCATTCTCA
GGAGAGCCATTACCGACCGACCGGCCTCTCCGCCCTGAATAGCAAGCTCC
GCCGGCGGAACAGCCATGGCGCTCCGTTCAGCACCGCAAACACCCCAATC
GCTGCAGCCCCCAAAGTCGGACCGCAAAGAACGACGAAAAATGCCCAAAA
ACTCAAACTGCTTCCCGATCCGGTGACTGAGGCCGAGGAGGAGCTTGGTG
GAGATGACTTTCCGTCCGATGTCTATTCGCAGATTGCCCGGATCAAAGAA
CCCACGGCGAGGAGTCATGCTGCAAAGTTAGGAAAGGCCGACAGAGAGCG
TCTGCCGCGAGTGACTGCCTACTGCACAGCCAATTCTTATCGACTGGAGG
GAATAATCAAGTTTCTCAAGTCTCGTTCTAAAACCCGCGGGGCCAACCCG
AAGCTCTACGACGAATGTGTCTACTCTCCATATGACTACGGCTATGAGGA
AAAGCAGAATGGCACATGGGGTCTTTCGAATAATGGAATGGGCATGGCGG
ATAGTCACCCTGGTCAACGGCCGTCCAATGAGCGCCGCTACTCGGACAGT
GTGGTTGAGGTTCAGGATAACACCAATGCTCGACGGGAAGACCTCATAGA
TCTACGGGACTCTCAATCCCACTCCACCGATATAGATCACGCTTCGAGTA
CTGCTGTGTCAGAAAACCAAGGAGATGTACATCCCGACTTCGACACGACG
ATCCATACCCCTGAAGTGTTTCTCTTTGATTACGGCACAGTCGTCATATG
GGGCATGTCACCTGCACACGAGTCACGATTCTTATCCGATGTTTCCAAAT
TTGCCGCTTCCATCCTCAGCCCCGAAGATACCCAGGTTGAGAACTTCAAT
TTCTACTATGCTCGCGAATATCAAGCCCGGATATACAACGACTTTATCTC
TCTGCGCGATCCGCGTAACCACATGATCAAACTGGCCATCTCCCACGCAT
TGGCTCAATCCGTCAAGACCTCCCTATTCGAAGACCTCGTATCCGAGACC
ATCTCCAACACCGCACCCCTACCCGCCCAGATCGCCCAGACAGGAAGTGT
CAACCTCACCCGCCGCCAGATCAACATGCAAATCGGCGAATTGTTCATCC
TCCGGATCAACATTCACCTGCAAGGCTCGGTTCTAGACTCTCCAGAACTT
ATGTGGGCCGAGCCCCAACTAGAACCGGTTTACCAGGCCGTCCGCAGTTA
CCTTGAAATGGACCAGCGCGTAAGCCTGCTCACCGAACGACTGGACGTAA
TAGCGGATCTTCTCGCCGTCCTCAAAGATCAATTAACTCACCGCCACGGT
GAGTATCTTGAATGGATCGTAATTGTTCTTATTGCGGCAGAAATTCTGGT
CGCAGCTATCAACATCGTAGTTGACTTGTACGCTGGCGTGGAGTGAATGG
TCACCACAGAATCCTCTCCGCTCCTCCCCCAGCATCATCTCCCGAATCCC
TCCAATACGTCACCGCGAGGAAACCGTCCGCCGCGGACAGTGACCTTCAA
CCCATTGGCGACTGTCAGCACTTACCATGACTCGACCTCCGCCGATCCCA
CGTTTAGACCTCTTCAGTCCGGCTCCTCATCTGCACCGCATTCTCAGGAG
AGCCATTACCGACCGACCGGCCTCTCCGCCCTGAATAGCAAGCTCCGCCG
GCGGAACAGCCATGGCGCTCCGTTCAGCACCGCAAACACCCCAATCGCTG
CAGCCCCCAAAGTCGGACCGCAAAGAACGACGAAAAATGCCCAAAAACTC
AAACTGCTTCCCGATCCGGTGACTGAGGCCGAGGAGGAGCTTGGTGGAGA
TGACTTTCCGTCCGATGTCTATTCGCAGATTGCCCGGATCAAAGAACCCA
CGGCGAGGAGTCATGCTGCAAAGTTAGGAAAGGCCGACAGAGAGCGTCTG
CCGCGAGTGACTGCCTACTGCACAGCCAATTCTTATCGACTGGAGGGAAT
AATCAAGTTTCTCAAGTCTCGTTCTAAAACCCGCGGGGCCAACCCGAAGC
TCTACGACGAATGTGTCTACTCTCCATATGACTACGGCTATGAGGAAAAG
CAGAATGGCACATGGGGTCTTTCGAATAATGGAATGGGCATGGCGGATAG
TCACCCTGGTCAACGGCCGTCCAATGAGCGCCGCTACTCGGACAGTGTGG
TTGAGGTTCAGGATAACACCAATGCTCGACGGGAAGACCTCATAGATCTA
CGGGACTCTCAATCCCACTCCACCGATATAGATCACGCTTCGAGTACTGC
TGTGTCAGAAAACCAAGGAGATGTACATCCCGACTTCGACACGACGATCC
ATACCCCTGAAGTGTTTCTCTTTGATTACGGCACAGTCGTCATATGGGGC
ATGTCACCTGCACACGAGTCACGATTCTTATCCGATGTTTCCAAATTTGC
CGCTTCCATCCTCAGCCCCGAAGATACCCAGGTTGAGAACTTCAATTTCT
ACTATGCTCGCGAATATCAAGCCCGGATATACAACGACTTTATCTCTCTG
CGCGATCCGCGTAACCACATGATCAAACTGGCCATCTCCCACGCATTGGC
TCAATCCGTCAAGACCTCCCTATTCGAAGACCTCGTATCCGAGACCATCT
CCAACACCGCACCCCTACCCGCCCAGATCGCCCAGACAGGAAGTGTCAAC
CTCACCCGCCGCCAGATCAACATGCAAATCGGCGAATTGTTCATCCTCCG
GATCAACATTCACCTGCAAGGCTCGGTTCTAGACTCTCCAGAACTTATGT
GGGCCGAGCCCCAACTAGAACCGGTTTACCAGGCCGTCCGCAGTTACCTT
GAAATGGACCAGCGCGTAAGCCTGCTCACCGAACGACTGGACGTAATAGC
GGATCTTCTCGCCGTCCTCAAAGATCAATTAACTCACCGCCACGGTGAGT
ATCTTGAATGGATCGTAATTGTTCTTATTGCGGCAGAAATTCTGGTCGCA
GCTATCAACATCGTAGTTGACTTGTACGCTGGCGTGGAGTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006270-T1.utr5p1 | KJC3_006270-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006270-T1.utr3p1 | KJC3_006270-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR003734 |
| DBxref | PFAM:PF02582 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:5202294..5204418 + |
|
