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KJC3_006279-T1, KJC3_006279-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006279-T1
Unique NameKJC3_006279-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:5222770..5223689+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006279-T1 ID=KJC3_006279-T1|Name=KJC3_006279-T1|organism=Aspergillus niger KJC3|type=mRNA|length=920bp|location=Sequence derived from alignment at ch4:5222770..5223689+ (Aspergillus niger KJC3)
CGTCGTTAAGAAGGCTTTTATCTACCTTTGAACTATCTCATTTCGCTTGG
AAGGATACGGCGACTCCAATAGAGTGCTTTTATCCTTTGCTTTCCACCTC
TTACGGAGTTGATCCCATCTCTGTTTCGATCCGCCCACAACACTGACCCA
TCCATATTGATCACACGATCGCAAGATGGTAATTACCTCTGAAGCCTACC
ATGATCCAATATATCTACTGCGTCTACTGACTCTCACATGAACAGTTACC
TCTCGGTCTCCTGACGGCCGCGCAAGGCCACCCCATGCTCGTGGAACTCA
AGAACGGCGAAACCCTCAACGGACACCTCGCCAATTGCGACAACTGGATG
AACCTGATACTCAAGGAAGTTGTTCAGACGAGTCCCGAAGGTGACCGCTT
CTTCCGGCTACCAGAGGTCTACGTCAGAGGAAACAATGTGAGTATCTTGC
CTGCGCCCACCCTAGATCCAATTTCAGGGAATCTCCCCGGCCCTCCCTAC
TAACCGCTTATAGATCAAATACCTACGGATCCCCGAAGAAATCATAGAGA
TGGTCAAGGAGCAACAGGCGAACCAGTCGCAAAATCGCAACCGCGGGCCG
CGTGAGGGTGGTAGGGGTGACCGAGGTCGTGGTGGAGGCCGGGGTCGTGG
ACGCGGCCGCGGCCGTGGTGGCAGGGACGCTTGAAGTTTTGTTGGTTTTT
TTATCTACGAAAGAATGAGAGAGATTATGAGCGATACCCCGGGGGGCAAG
GTTTAGTAGGGATTGAGTTCGCTAGGAAATGTCCGTTTGACGGGTTAGTC
GAGCATGGCCTTGGCGTATCTGGTTGTATTTGTCAATGGGAAAACATGCC
ACCTAGGCTTCCTTCTGTTCTCTGATACCATTGTAGTGTACGGTTTATTC
GGAAAGTCAGGCTAGGGGAG
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Coding sequence (CDS) from alignment at ch4:5222770..5223689+

>KJC3_006279-T1 ID=KJC3_006279-T1|Name=KJC3_006279-T1|organism=Aspergillus niger KJC3|type=CDS|length=1098bp|location=Sequence derived from alignment at ch4:5222770..5223689+ (Aspergillus niger KJC3)
ATGTTACCTCTCGGTCTCCTGACGGCCGCGCAAGGCCACCCCATGCTCGT
GGAACTCAAGAACGGCGAAACCCTCAACGGACACCTCGCCAATTGCGACA
ACTGGATGAACCTGATACTCAAGGAAGTTGTTCAGACGAGTCCCGAAGGT
GACCGCTTCTTCCGGCTACCAGAGGTCTACGTCAGAGGAAACAATATCAA
ATACCTACGGATCCCCGAAGAAATCATAGAGATGGTCAAGGAGCAACAGG
CGAACCAGTCGCAAAATCGCAACCGCGGGCCGCGTGAGGGTGGTAGGGGT
GACCGAGGTCGTGGTGGAGGCCGGGGTCGTGGACGCGGCCGCGGCCGTGG
TGGCAGGGACGCTTGAATGTTACCTCTCGGTCTCCTGACGGCCGCGCAAG
GCCACCCCATGCTCGTGGAACTCAAGAACGGCGAAACCCTCAACGGACAC
CTCGCCAATTGCGACAACTGGATGAACCTGATACTCAAGGAAGTTGTTCA
GACGAGTCCCGAAGGTGACCGCTTCTTCCGGCTACCAGAGGTCTACGTCA
GAGGAAACAATATCAAATACCTACGGATCCCCGAAGAAATCATAGAGATG
GTCAAGGAGCAACAGGCGAACCAGTCGCAAAATCGCAACCGCGGGCCGCG
TGAGGGTGGTAGGGGTGACCGAGGTCGTGGTGGAGGCCGGGGTCGTGGAC
GCGGCCGCGGCCGTGGTGGCAGGGACGCTTGAATGTTACCTCTCGGTCTC
CTGACGGCCGCGCAAGGCCACCCCATGCTCGTGGAACTCAAGAACGGCGA
AACCCTCAACGGACACCTCGCCAATTGCGACAACTGGATGAACCTGATAC
TCAAGGAAGTTGTTCAGACGAGTCCCGAAGGTGACCGCTTCTTCCGGCTA
CCAGAGGTCTACGTCAGAGGAAACAATATCAAATACCTACGGATCCCCGA
AGAAATCATAGAGATGGTCAAGGAGCAACAGGCGAACCAGTCGCAAAATC
GCAACCGCGGGCCGCGTGAGGGTGGTAGGGGTGACCGAGGTCGTGGTGGA
GGCCGGGGTCGTGGACGCGGCCGCGGCCGTGGTGGCAGGGACGCTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO:0000956nuclear-transcribed mRNA catabolic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
LSM4KJC3_006279Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006279-T1KJC3_006279-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006279-T1.utr5p1KJC3_006279-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006279-T1.exon1KJC3_006279-T1.exon1Aspergillus niger KJC3exon
KJC3_006279-T1.exon2KJC3_006279-T1.exon2Aspergillus niger KJC3exon
KJC3_006279-T1.exon3KJC3_006279-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006279-T1.cdsKJC3_006279-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006279-T1.utr3p1KJC3_006279-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR010920
DBxrefInterPro:IPR034101
DBxrefInterPro:IPR001163
DBxrefPFAM:PF01423
ProductRNA processing protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:5222770..5223689 +
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