You are here

Home

KJC3_006320-T1, KJC3_006320-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006320-T1
Unique NameKJC3_006320-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:5352435..5354175-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006320-T1 ID=KJC3_006320-T1|Name=KJC3_006320-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1741bp|location=Sequence derived from alignment at ch4:5352435..5354175- (Aspergillus niger KJC3)
AATAGAATCAACAGACCTGCACAGCATGTCTGCCGGTTGAATTGAACATC
AGACGCATACCCCACTGGTGACTAAAGCCCGCGGCTACCCGAATCCAGAC
AGTCACCTGCCCGTCTTCTTTCGGGCCGATTCGTTTGACGTCAGGGGAAA
CGAGGGGCAACTGGCTAGCCTTATCGCCCGTTATCACCGAAACCTCCACA
TCCCCGGAGAAGCTCGCTGGCATCATCTGACCCTCGCACGTCACATCCCT
CCAGTTGGGCTCCACTGAACTGCTGTTACTGCTGTGTACGAATTGTGTTC
TGTTCATTCTGCTTGCGCGAAGATATGAGATTCACACATATTCCCCGCAG
TTGATCAGATCATGGACGACGCCCATCCAAAGCTCCACCTCTACTCTCTT
CCCAACGAAGTGCGACAACGCGATCTCCAACGGTTGTCAAGATGTCTCGC
TAATGCTTGTATGGCTCTTCCAGGTTCTCGGTCAGATTCTATCCTCTTTC
TCGACGCGCTCCCTCATCTCTTGGGCGACAGTTTCTCACCGCTTCTACGC
CCTCGTCCTACGGATCCTACATTATCGCCTACTCATCGGCGCTCCACTGC
ATGAATACAAACTCATCCTAGAATGCTTTCATCCAAACTCAAAGCTAACC
GAACCTCATGTATTCTGCACATACCTTGACACCGACGGTTTAGATTGGCT
CTCCGGGCGGGGTGGTTCGCTTTATGAGAATCCCGACACGACCCAGCAAC
TTGGGAAACTGAGTTCGGTGTATTCTCGGTTCCGTCCTGAAGTCGTGGTA
GAAGAAAGATTTAGCGGAACAAGGCTAGTTCCCCTAAGAGGTATGTATCC
CTGTTCCCGGACACAGTGGTCACGGCCCCGAAGTCTCTGACTTTGGCAGA
CGATGAGCAAGAATCCGATCGGGACAACTTGGTTGTCACGCGCCCTATAA
TCCTCAAGGACTCTGAAGACTTCTCTCAGCTATGTATGGTTGTGAACATT
GTGAAGGTCATGCCGGGTACGAATCTGCTTCTAAGTGCACACACGGTTGA
GGACGGGGTAATCAGGGTTTTCCGCGACTGGCTGAGGGACGAAGAGAAGC
GCTTCCGGGATATTGTACCTGATGGTACAGGGCCTTCGCAAATGCTATGG
GTCGATCAGAGCAAGGGTGTCGGCATCAAAGTGCGGGTCAAGGCGAAACC
GCTTATGAACCAAAATGTGCCAATTCTCGTCCATCGCGACGACGACGAAT
TCACGAGCTATGAATTGTTAATCGAAGGTATGATGATCCCTTCTCCTATT
TTAACTATATACACTAACAGATGACTAGAATTACATATACGCGCTGTTCG
CTTACTATTGACTTTGGAAAAATCGCAGGAGGAACAGCAGAACTATTATA
AAGCTGTAGTTATAACCCCCACCCTTGGATAGAGGTATTTACAGGTAGAC
ATGTCAGTGATACGGAGGCGGAGATCTCGGTCCGGGCGCATGTTTATACG
TCTTTCGTTTATAGCGTTTCTTTTGCAGAGTATGCATTCTAGAGCAATAT
TAAGGTTCTGTGTCAGAGGTGACTAGATCTCGGTCCGGTCAGACGATACT
GTTCACTTGCTTGCTCTCTACCTCTTCCAAGGACGCGAGCAAACACGGGA
CCACCCTTTGCTGTCAGCTTACTTTGGAAGCGCATAAAGCCCCCACCTAA
GATTTTTAATCCCTGCAATCTTGTTTTCCGGAAAACAAGAT
back to top

Coding sequence (CDS) from alignment at ch4:5352435..5354175-

>KJC3_006320-T1 ID=KJC3_006320-T1|Name=KJC3_006320-T1|organism=Aspergillus niger KJC3|type=CDS|length=3588bp|location=Sequence derived from alignment at ch4:5352435..5354175- (Aspergillus niger KJC3)
AATTACATATACGCGCTGTTCGCTTACTATTGACTTTGGAAAAATCGCAG
GAGGAACAGCAGAACTATTATAAAGCTGTAGTTATAACCCCCACCCTTGG
ATAGACGATGAGCAAGAATCCGATCGGGACAACTTGGTTGTCACGCGCCC
TATAATCCTCAAGGACTCTGAAGACTTCTCTCAGCTATGTATGGTTGTGA
ACATTGTGAAGGTCATGCCGGGTACGAATCTGCTTCTAAGTGCACACACG
GTTGAGGACGGGGTAATCAGGGTTTTCCGCGACTGGCTGAGGGACGAAGA
GAAGCGCTTCCGGGATATTGTACCTGATGGTACAGGGCCTTCGCAAATGC
TATGGGTCGATCAGAGCAAGGGTGTCGGCATCAAAGTGCGGGTCAAGGCG
AAACCGCTTATGAACCAAAATGTGCCAATTCTCGTCCATCGCGACGACGA
CGAATTCACGAGCTATGAATTGTTAATCGAAGGTTCTCGGTCAGATTCTA
TCCTCTTTCTCGACGCGCTCCCTCATCTCTTGGGCGACAGTTTCTCACCG
CTTCTACGCCCTCGTCCTACGGATCCTACATTATCGCCTACTCATCGGCG
CTCCACTGCATGAATACAAACTCATCCTAGAATGCTTTCATCCAAACTCA
AAGCTAACCGAACCTCATGTATTCTGCACATACCTTGACACCGACGGTTT
AGATTGGCTCTCCGGGCGGGGTGGTTCGCTTTATGAGAATCCCGACACGA
CCCAGCAACTTGGGAAACTGAGTTCGGTGTATTCTCGGTTCCGTCCTGAA
GTCGTGGTAGAAGAAAGATTTAGCGGAACAAGGCTAGTTCCCCTAAGAGA
TGGACGACGCCCATCCAAAGCTCCACCTCTACTCTCTTCCCAACGAAAAT
TACATATACGCGCTGTTCGCTTACTATTGACTTTGGAAAAATCGCAGGAG
GAACAGCAGAACTATTATAAAGCTGTAGTTATAACCCCCACCCTTGGATA
GACGATGAGCAAGAATCCGATCGGGACAACTTGGTTGTCACGCGCCCTAT
AATCCTCAAGGACTCTGAAGACTTCTCTCAGCTATGTATGGTTGTGAACA
TTGTGAAGGTCATGCCGGGTACGAATCTGCTTCTAAGTGCACACACGGTT
GAGGACGGGGTAATCAGGGTTTTCCGCGACTGGCTGAGGGACGAAGAGAA
GCGCTTCCGGGATATTGTACCTGATGGTACAGGGCCTTCGCAAATGCTAT
GGGTCGATCAGAGCAAGGGTGTCGGCATCAAAGTGCGGGTCAAGGCGAAA
CCGCTTATGAACCAAAATGTGCCAATTCTCGTCCATCGCGACGACGACGA
ATTCACGAGCTATGAATTGTTAATCGAAGGTTCTCGGTCAGATTCTATCC
TCTTTCTCGACGCGCTCCCTCATCTCTTGGGCGACAGTTTCTCACCGCTT
CTACGCCCTCGTCCTACGGATCCTACATTATCGCCTACTCATCGGCGCTC
CACTGCATGAATACAAACTCATCCTAGAATGCTTTCATCCAAACTCAAAG
CTAACCGAACCTCATGTATTCTGCACATACCTTGACACCGACGGTTTAGA
TTGGCTCTCCGGGCGGGGTGGTTCGCTTTATGAGAATCCCGACACGACCC
AGCAACTTGGGAAACTGAGTTCGGTGTATTCTCGGTTCCGTCCTGAAGTC
GTGGTAGAAGAAAGATTTAGCGGAACAAGGCTAGTTCCCCTAAGAGATGG
ACGACGCCCATCCAAAGCTCCACCTCTACTCTCTTCCCAACGAAAATTAC
ATATACGCGCTGTTCGCTTACTATTGACTTTGGAAAAATCGCAGGAGGAA
CAGCAGAACTATTATAAAGCTGTAGTTATAACCCCCACCCTTGGATAGAC
GATGAGCAAGAATCCGATCGGGACAACTTGGTTGTCACGCGCCCTATAAT
CCTCAAGGACTCTGAAGACTTCTCTCAGCTATGTATGGTTGTGAACATTG
TGAAGGTCATGCCGGGTACGAATCTGCTTCTAAGTGCACACACGGTTGAG
GACGGGGTAATCAGGGTTTTCCGCGACTGGCTGAGGGACGAAGAGAAGCG
CTTCCGGGATATTGTACCTGATGGTACAGGGCCTTCGCAAATGCTATGGG
TCGATCAGAGCAAGGGTGTCGGCATCAAAGTGCGGGTCAAGGCGAAACCG
CTTATGAACCAAAATGTGCCAATTCTCGTCCATCGCGACGACGACGAATT
CACGAGCTATGAATTGTTAATCGAAGGTTCTCGGTCAGATTCTATCCTCT
TTCTCGACGCGCTCCCTCATCTCTTGGGCGACAGTTTCTCACCGCTTCTA
CGCCCTCGTCCTACGGATCCTACATTATCGCCTACTCATCGGCGCTCCAC
TGCATGAATACAAACTCATCCTAGAATGCTTTCATCCAAACTCAAAGCTA
ACCGAACCTCATGTATTCTGCACATACCTTGACACCGACGGTTTAGATTG
GCTCTCCGGGCGGGGTGGTTCGCTTTATGAGAATCCCGACACGACCCAGC
AACTTGGGAAACTGAGTTCGGTGTATTCTCGGTTCCGTCCTGAAGTCGTG
GTAGAAGAAAGATTTAGCGGAACAAGGCTAGTTCCCCTAAGAGATGGACG
ACGCCCATCCAAAGCTCCACCTCTACTCTCTTCCCAACGAAAATTACATA
TACGCGCTGTTCGCTTACTATTGACTTTGGAAAAATCGCAGGAGGAACAG
CAGAACTATTATAAAGCTGTAGTTATAACCCCCACCCTTGGATAGACGAT
GAGCAAGAATCCGATCGGGACAACTTGGTTGTCACGCGCCCTATAATCCT
CAAGGACTCTGAAGACTTCTCTCAGCTATGTATGGTTGTGAACATTGTGA
AGGTCATGCCGGGTACGAATCTGCTTCTAAGTGCACACACGGTTGAGGAC
GGGGTAATCAGGGTTTTCCGCGACTGGCTGAGGGACGAAGAGAAGCGCTT
CCGGGATATTGTACCTGATGGTACAGGGCCTTCGCAAATGCTATGGGTCG
ATCAGAGCAAGGGTGTCGGCATCAAAGTGCGGGTCAAGGCGAAACCGCTT
ATGAACCAAAATGTGCCAATTCTCGTCCATCGCGACGACGACGAATTCAC
GAGCTATGAATTGTTAATCGAAGGTTCTCGGTCAGATTCTATCCTCTTTC
TCGACGCGCTCCCTCATCTCTTGGGCGACAGTTTCTCACCGCTTCTACGC
CCTCGTCCTACGGATCCTACATTATCGCCTACTCATCGGCGCTCCACTGC
ATGAATACAAACTCATCCTAGAATGCTTTCATCCAAACTCAAAGCTAACC
GAACCTCATGTATTCTGCACATACCTTGACACCGACGGTTTAGATTGGCT
CTCCGGGCGGGGTGGTTCGCTTTATGAGAATCCCGACACGACCCAGCAAC
TTGGGAAACTGAGTTCGGTGTATTCTCGGTTCCGTCCTGAAGTCGTGGTA
GAAGAAAGATTTAGCGGAACAAGGCTAGTTCCCCTAAGAGATGGACGACG
CCCATCCAAAGCTCCACCTCTACTCTCTTCCCAACGAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_006320KJC3_006320Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006320-T1KJC3_006320-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006320-T1.cdsKJC3_006320-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006320-T1.utr3p1KJC3_006320-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006320-T1.exon4KJC3_006320-T1.exon4Aspergillus niger KJC3exon
KJC3_006320-T1.exon3KJC3_006320-T1.exon3Aspergillus niger KJC3exon
KJC3_006320-T1.exon2KJC3_006320-T1.exon2Aspergillus niger KJC3exon
KJC3_006320-T1.exon1KJC3_006320-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006320-T1.utr5p1KJC3_006320-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036047
DBxrefInterPro:IPR001810
DBxrefPFAM:PF12937
DBxrefPFAM:PF00646
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:5352435..5354175 -
Powered by Drupal