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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:5548430..5550279- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006393-T1 ID=KJC3_006393-T1|Name=KJC3_006393-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1850bp|location=Sequence derived from alignment at ch4:5548430..5550279- (Aspergillus niger KJC3)
GAAGCACTTCGCATTCCTGATCCATTGCTTTCTGTCCGTGCTCGGTGCTG
TCTTTGTGCCCTATGCGCTGAGTCTGCTGGGTGCCTTCTTGTCCGCTTTT
TCGTATCTTCTCTTTTCACTCTCCTCTCTTCTTCTTGCTACGCGATTGAT
AGCCACATCCACATTTCCACCATGGACGTTCCTGAGCCTGAGCAGACGCC
TTTCACGGCCGTGACGGCGCAAACCTCGAAGCTGGCTAGGGTACGTATCT
GTACTTCCTTTTGGACCCTTTTTCACAGTGTCTGTCGCAATCCTGCAACC
AGCGCAGACGACGTGCCCATCCGCTACCCCAGCAGACAACACCAACCCAC
GGACCATGACATGACATGATAAGCTAACTAATACCTCGCACAGCAATACC
AAACCTACCTCGACGCCTCCACCCCATTCACAGCCTACCGCTGGACCGGC
ACCGTCGTCCTGCTCCTCGTCTTCTTCCTGAGAATCGTCCTCGCCCAGGG
ATGGTACATCGTGGCCTACACCCTCGGCATCTACCTGCTCAACCTCTTCC
TCCTCTTCCTGCAACCCAAGTTCGACCCCTCCCTGACGCAGGATGAGGGT
CTGGAAGACGGCGACGCCGCCGCTCCCAGCCTGCCCATGAAGCAAGACGA
CGAATTCCGTCCTTTCATCCGCCGTCTCCCCGAGTTCAAGTTCTGGCACT
CGGCCACTCGCGCCATTCTTATCGGCTTCGTTTGCTCGTGGTTCGCCGTC
TTCGATATCCCGGTGTTCTGGCCTGTCTTGGTGGTCTACTGGATTATTCT
CTTTGTGTTGACCAGTACGTATACCAGTTCTGCTTATCTGTGGTGGGAGG
CGAAACCGGCAGAAGGCTAACCCAAATTCACTACTAGTGCGCCGCCAGAT
CCAGCACATGATCAAGTACCGCTACGTGCCGTTCTCGTTCGGTAAGACGC
GGTACGGCCGGTCATAAAGCGACACCGACACGCAAAAAAAGAAAAATAGA
TATATCTTTTCATCTGCCTGAATGAATCACGGCAGATTGCAATGAGATGT
GATGAGACGAGACGATGATGTGGTGTGATATGATGATGAAATTCGTCATG
TCATGCTATGCGATACATGGCTTTGTGCTCTTCTCTGATGGTTACGCTAG
TACATCCGTATAATATCGATGAATTAGATGTCGCCGTTCGGAATATTTCT
CCCCCTTCCTGTCCGATGTCTTACACCATGTACTCAACCTTCATGCCAGA
ATATAGGCTGGTTGTTGGTAAGTACACGGGGTAATGACACAAGGACAAGC
ACAATAAATACCTTTACAACCCCTTTAATTTCGCTGTTTCTTTCTCTTCA
TGATGATCTTTGTGTGACCCCGTGGTGGCCTTGTGTGTGCGTGTGAGTGA
ACTGACTTTATGAACCTTTACTGGGATGTTATTAGTACCTTCCTACTATT
CAATGTGTACAGAATTATAAGTCAATGCCGTTTATGCTTATTGCTCTCTT
CGCTTTTTTTGCTCCTGCTCCTGATCCTGCTTTTTTCTCCATGTGCCATT
AGAACTTTAGCTGATCTTCAGTGTGTCGTGCCGTGCCGTGTAAGCTACTG
ATATCGTGGTGGAGTATGATGATGGTGAATAGATAAAAGTGCGCTGGCAT
TCTGGTACTTTTCTAGGAGGATAGACACTGGGGTCTGGGTAGGTTTCAGA
TAGTATCTCCAAGTACTAGTAAGTACTACTTGACAATACTGGTAATGGGT
CGGTTTTGATTGGTCGAGAAGTGGGTACTATTCAGCAGAGGAAAGAACGT
CTGAGGTCTCCTTTGTTCCTTCGGAGACCACATTATCATCTTCAGTCATG
back to topCoding sequence (CDS) from alignment at ch4:5548430..5550279- >KJC3_006393-T1 ID=KJC3_006393-T1|Name=KJC3_006393-T1|organism=Aspergillus niger KJC3|type=CDS|length=1710bp|location=Sequence derived from alignment at ch4:5548430..5550279- (Aspergillus niger KJC3)
TGCGCCGCCAGATCCAGCACATGATCAAGTACCGCTACGTGCCGTTCTCG
TTCGGTAAGACGCGGTACGGCCGGTCATAACAATACCAAACCTACCTCGA
CGCCTCCACCCCATTCACAGCCTACCGCTGGACCGGCACCGTCGTCCTGC
TCCTCGTCTTCTTCCTGAGAATCGTCCTCGCCCAGGGATGGTACATCGTG
GCCTACACCCTCGGCATCTACCTGCTCAACCTCTTCCTCCTCTTCCTGCA
ACCCAAGTTCGACCCCTCCCTGACGCAGGATGAGGGTCTGGAAGACGGCG
ACGCCGCCGCTCCCAGCCTGCCCATGAAGCAAGACGACGAATTCCGTCCT
TTCATCCGCCGTCTCCCCGAGTTCAAGTTCTGGCACTCGGCCACTCGCGC
CATTCTTATCGGCTTCGTTTGCTCGTGGTTCGCCGTCTTCGATATCCCGG
TGTTCTGGCCTGTCTTGGTGGTCTACTGGATTATTCTCTTTGTGTTGACC
AATGGACGTTCCTGAGCCTGAGCAGACGCCTTTCACGGCCGTGACGGCGC
AAACCTCGAAGCTGGCTAGGTGCGCCGCCAGATCCAGCACATGATCAAGT
ACCGCTACGTGCCGTTCTCGTTCGGTAAGACGCGGTACGGCCGGTCATAA
CAATACCAAACCTACCTCGACGCCTCCACCCCATTCACAGCCTACCGCTG
GACCGGCACCGTCGTCCTGCTCCTCGTCTTCTTCCTGAGAATCGTCCTCG
CCCAGGGATGGTACATCGTGGCCTACACCCTCGGCATCTACCTGCTCAAC
CTCTTCCTCCTCTTCCTGCAACCCAAGTTCGACCCCTCCCTGACGCAGGA
TGAGGGTCTGGAAGACGGCGACGCCGCCGCTCCCAGCCTGCCCATGAAGC
AAGACGACGAATTCCGTCCTTTCATCCGCCGTCTCCCCGAGTTCAAGTTC
TGGCACTCGGCCACTCGCGCCATTCTTATCGGCTTCGTTTGCTCGTGGTT
CGCCGTCTTCGATATCCCGGTGTTCTGGCCTGTCTTGGTGGTCTACTGGA
TTATTCTCTTTGTGTTGACCAATGGACGTTCCTGAGCCTGAGCAGACGCC
TTTCACGGCCGTGACGGCGCAAACCTCGAAGCTGGCTAGGTGCGCCGCCA
GATCCAGCACATGATCAAGTACCGCTACGTGCCGTTCTCGTTCGGTAAGA
CGCGGTACGGCCGGTCATAACAATACCAAACCTACCTCGACGCCTCCACC
CCATTCACAGCCTACCGCTGGACCGGCACCGTCGTCCTGCTCCTCGTCTT
CTTCCTGAGAATCGTCCTCGCCCAGGGATGGTACATCGTGGCCTACACCC
TCGGCATCTACCTGCTCAACCTCTTCCTCCTCTTCCTGCAACCCAAGTTC
GACCCCTCCCTGACGCAGGATGAGGGTCTGGAAGACGGCGACGCCGCCGC
TCCCAGCCTGCCCATGAAGCAAGACGACGAATTCCGTCCTTTCATCCGCC
GTCTCCCCGAGTTCAAGTTCTGGCACTCGGCCACTCGCGCCATTCTTATC
GGCTTCGTTTGCTCGTGGTTCGCCGTCTTCGATATCCCGGTGTTCTGGCC
TGTCTTGGTGGTCTACTGGATTATTCTCTTTGTGTTGACCAATGGACGTT
CCTGAGCCTGAGCAGACGCCTTTCACGGCCGTGACGGCGCAAACCTCGAA
GCTGGCTAGG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006393-T1.utr3p1 | KJC3_006393-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006393-T1.utr5p1 | KJC3_006393-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09265ANI |
| DBxref | InterPro:IPR004932 |
| DBxref | PFAM:PF03248 |
| Product | retention in endoplasmic reticulum protein 1 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:5548430..5550279 - |
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