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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:5631849..5634087+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006421-T1 ID=KJC3_006421-T1|Name=KJC3_006421-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2239bp|location=Sequence derived from alignment at ch4:5631849..5634087+ (Aspergillus niger KJC3)
GTCGTGTTTGCGATCTGCCGTGACGGAGTGACAGGATCCTAATATAATTT
AGGAGGAGCTATATCGGGATTCTAGAAGGGATTCACTGCATCTAAAACCT
TCTATTGTTATGAGGTACTAGGGAGTTTCTTACAGCTGGATATGCCGTTC
TTATCCTAAACGAATATGACAACTCTATCGTTCTCGCTCGCCCCGAAGGC
GATATACCAACTACATGATGCTCTGATGTGTCTAGCAAAGTTCGACGATA
GCGTGGCAATAGAAGCTGAGATTGACCTGGCAAGTTGATGGCCTGATTGA
AGGAGAAATACAGGCCGAACTGGGCTAATTGATCACCGAAGCTTCGCTTA
AGCGTGCTCAACTCGACCAAGACGGCCTACTCGGCGTTTGTCTTCGAAGC
GGATGGCTTTTTCGAGTCCTACTCTTTCGGTAGGGTGAGGAATGGCAGCT
CGTCTAGGACTGCTCATCCAGACAAATTCAGCTGTCAGGTGCTAATTAAG
GTCGGAACCTACGTACTAAGTAGTCTCGTATTTGGGCTGACATACCACAG
GCCCTCCTATCGGCCTTTAAAGGAAAGACGAGTGGACGTGACAAGGACAC
TTCTGTCGAACGGTGCGAGGTTGAGCTCCAGGAAGACCTTGATGAAACCG
AATGCAGACTCGTCATTAGATTAATATGTGGGCTTGGTAAGCATTCGATA
TGTTCTGAGTTCGGGCTTATCTGCGGCTCCAGCTCACAGTCCTTAGCAGG
CGTCATCAAGCTCTACAAGCTTACGTATGAACCTGTCCATGTGCAACATG
CCATATTCGACAGATCCAAAGCGACAAACGAATGGAGTATTGAACCCAAG
TACTTGAAGGAGATAACGGATCATTTCGGCCCCTCAGCAGAGCATCTGGA
TATCTACTCCGAGCAAGGCAAGGCTGTCTTTACCAGCTTTACCACGAAAA
GCTCAGACGGAAAAGGTAATGCTACCGGACTGTTCCATGAGTTTACCAGC
CTACTCACCGTCTGTCACAGAAATCCTTCGCCAGCCGGTGCACACGTCCG
TAGCTATTGAGAAAAGGGACTTCGATTACTATTTAGCAGAAGACCATCTT
CACGTTGCCATCCACATGAAGGACTTCAAGGCGGCAATAGCACATGCTGA
GACAGCAAACGCAAAGATCACCGCCCGGTTCACCCGTCCATCTCGCCCTC
TGCAATTCGCCTACGAATCTGAGGGCGTCAAAACCGAATTTACGCTGATG
ACTAGAGGAGAGTCGCCCGGGGAGGACGTTCCGGGCTCCTCTCGAGCAGC
ACCTCAGTTATCCGCACGTCAAACTCCAGCACCCGTGCAGATAAGCCAAA
GGAACACGGCTCCAGAGACCGCACAAATGCCTCCTCCCCGCAGTCGGTCG
ATCCGGCCACTCACTGGGACTTCTACTCGGGCTTCACAATCCAACACCGA
GACCCAACAACCTCCGCCATCGATGGAGTTCGACAGTCTGTTCGTTCCAG
CGGATGACGACAGGCAATGGGACGTACCAAATGATGAGGATGAAGGTCCA
GTCGAGGACGAGCTCGGCTGGGATGCCACTGGAGAGCAGGTATGGCTTAA
TCCGCCTTCTGCTTCAGGCCTATTACTGACAAACCCCCAACAGACAAGCA
CAGGCCCTGGGTTACGAGATATCGAACCCCGAATGGCACAGGCAAGTCAC
GAGGAAGAGGAGATGGGAATTCCGCCCACTCAGCGCATGTCACAGGTAAG
TCGAGCGCGTTCGCATCTATTGATCGTGCTGACAACCCGTAGCTGCACGG
CCTCGGTCTCTTCGACTGAACCAGCCACCCTACACCTGTACACAGCAGAC
CACCGAGAACATTCCCTCAGCATGACTATCTCCGACCTCAATCCCGAGTA
ATCACCCAACTCGTCGCACAACCCGCGCCCAGCCCAACAACCTCCCCAAC
CCCATCCGGCAAAGGAACAGCGCTGCACACCCCCTTCACATTCCCCTGCG
CATCCGTAACAGGACCACAATTACCATGCTCCCCCCAACCACAAGCCACA
ACCGTCCTCATGTCAACAAGAGCAAGCACATGCTCACTCCCCACCGCCAA
CTCCTTCACCACCCCCATATCCCCCGGCGGCAATTGCCCGCGATCATTCC
TCCCCCAACTCACAACCCTCCCATCAGAACAATGTACATAAACCCCATGC
CAACTAGTCTGTATCCCCTGAAAACAGCCCACAGGCTCC back to topCoding sequence (CDS) from alignment at ch4:5631849..5634087+ >KJC3_006421-T1 ID=KJC3_006421-T1|Name=KJC3_006421-T1|organism=Aspergillus niger KJC3|type=CDS|length=7545bp|location=Sequence derived from alignment at ch4:5631849..5634087+ (Aspergillus niger KJC3)
ATGACAACTCTATCGTTCTCGCTCGCCCCGAAGGCGATATACCAACTACA
TGATGCTCTGATGTGTCTAGCAAAGTTCGACGATAGCGTGGCAATAGAAG
CTGAGATTGACCTGCTTCGCTTAAGCGTGCTCAACTCGACCAAGACGGCC
TACTCGGCGTTTGTCTTCGAAGCGGATGGCTTTTTCGAGTCCTACTCTTT
CGGTAGGGTGAGGAATGGCAGCTCGTCTAGGACTGCTCATCCAGACAAAT
TCAGCTGTCAGGTGCTAATTAAGGCCCTCCTATCGGCCTTTAAAGGAAAG
ACGAGTGGACGTGACAAGGACACTTCTGTCGAACGGTGCGAGGTTGAGCT
CCAGGAAGACCTTGATGAAACCGAATGCAGACTCGTCATTAGATTAATAT
GTGGGCTTGCAGGCGTCATCAAGCTCTACAAGCTTACGTATGAACCTGTC
CATGTGCAACATGCCATATTCGACAGATCCAAAGCGACAAACGAATGGAG
TATTGAACCCAAGTACTTGAAGGAGATAACGGATCATTTCGGCCCCTCAG
CAGAGCATCTGGATATCTACTCCGAGCAAGGCAAGGCTGTCTTTACCAGC
TTTACCACGAAAAGCTCAGACGGAAAAGAAATCCTTCGCCAGCCGGTGCA
CACGTCCGTAGCTATTGAGAAAAGGGACTTCGATTACTATTTAGCAGAAG
ACCATCTTCACGTTGCCATCCACATGAAGGACTTCAAGGCGGCAATAGCA
CATGCTGAGACAGCAAACGCAAAGATCACCGCCCGGTTCACCCGTCCATC
TCGCCCTCTGCAATTCGCCTACGAATCTGAGGGCGTCAAAACCGAATTTA
CGCTGATGACTAGAGGAGAGTCGCCCGGGGAGGACGTTCCGGGCTCCTCT
CGAGCAGCACCTCAGTTATCCGCACGTCAAACTCCAGCACCCGTGCAGAT
AAGCCAAAGGAACACGGCTCCAGAGACCGCACAAATGCCTCCTCCCCGCA
GTCGGTCGATCCGGCCACTCACTGGGACTTCTACTCGGGCTTCACAATCC
AACACCGAGACCCAACAACCTCCGCCATCGATGGAGTTCGACAGTCTGTT
CGTTCCAGCGGATGACGACAGGCAATGGGACGTACCAAATGATGAGGATG
AAGGTCCAGTCGAGGACGAGCTCGGCTGGGATGCCACTGGAGAGCAGGTA
TGGCTTAATCCGCCTTCTGCTTCAGGCCTATTACTGACAAACCCCCAACA
GACAAGCACAGGCCCTGGGTTACGAGATATCGAACCCCGAATGGCACAGG
CAAGTCACGAGGAAGAGGAGATGGGAATTCCGCCCACTCAGCGCATGTCA
CAGGTAAGTCGAGCGCGTTCGCATCTATTGATCGTGCTGACAACCCGTAG
CTGCACGGCCTCGGTCTCTTCGACTGAACCAGCCACCCTACACCTGTACA
CAGCAGACCACCGAGAACATTCCCTCAGCATGACTATCTCCGACCTCAAT
CCCGAGTAAATGACAACTCTATCGTTCTCGCTCGCCCCGAAGGCGATATA
CCAACTACATGATGCTCTGATGTGTCTAGCAAAGTTCGACGATAGCGTGG
CAATAGAAGCTGAGATTGACCTGCTTCGCTTAAGCGTGCTCAACTCGACC
AAGACGGCCTACTCGGCGTTTGTCTTCGAAGCGGATGGCTTTTTCGAGTC
CTACTCTTTCGGTAGGGTGAGGAATGGCAGCTCGTCTAGGACTGCTCATC
CAGACAAATTCAGCTGTCAGGTGCTAATTAAGGCCCTCCTATCGGCCTTT
AAAGGAAAGACGAGTGGACGTGACAAGGACACTTCTGTCGAACGGTGCGA
GGTTGAGCTCCAGGAAGACCTTGATGAAACCGAATGCAGACTCGTCATTA
GATTAATATGTGGGCTTGCAGGCGTCATCAAGCTCTACAAGCTTACGTAT
GAACCTGTCCATGTGCAACATGCCATATTCGACAGATCCAAAGCGACAAA
CGAATGGAGTATTGAACCCAAGTACTTGAAGGAGATAACGGATCATTTCG
GCCCCTCAGCAGAGCATCTGGATATCTACTCCGAGCAAGGCAAGGCTGTC
TTTACCAGCTTTACCACGAAAAGCTCAGACGGAAAAGAAATCCTTCGCCA
GCCGGTGCACACGTCCGTAGCTATTGAGAAAAGGGACTTCGATTACTATT
TAGCAGAAGACCATCTTCACGTTGCCATCCACATGAAGGACTTCAAGGCG
GCAATAGCACATGCTGAGACAGCAAACGCAAAGATCACCGCCCGGTTCAC
CCGTCCATCTCGCCCTCTGCAATTCGCCTACGAATCTGAGGGCGTCAAAA
CCGAATTTACGCTGATGACTAGAGGAGAGTCGCCCGGGGAGGACGTTCCG
GGCTCCTCTCGAGCAGCACCTCAGTTATCCGCACGTCAAACTCCAGCACC
CGTGCAGATAAGCCAAAGGAACACGGCTCCAGAGACCGCACAAATGCCTC
CTCCCCGCAGTCGGTCGATCCGGCCACTCACTGGGACTTCTACTCGGGCT
TCACAATCCAACACCGAGACCCAACAACCTCCGCCATCGATGGAGTTCGA
CAGTCTGTTCGTTCCAGCGGATGACGACAGGCAATGGGACGTACCAAATG
ATGAGGATGAAGGTCCAGTCGAGGACGAGCTCGGCTGGGATGCCACTGGA
GAGCAGGTATGGCTTAATCCGCCTTCTGCTTCAGGCCTATTACTGACAAA
CCCCCAACAGACAAGCACAGGCCCTGGGTTACGAGATATCGAACCCCGAA
TGGCACAGGCAAGTCACGAGGAAGAGGAGATGGGAATTCCGCCCACTCAG
CGCATGTCACAGGTAAGTCGAGCGCGTTCGCATCTATTGATCGTGCTGAC
AACCCGTAGCTGCACGGCCTCGGTCTCTTCGACTGAACCAGCCACCCTAC
ACCTGTACACAGCAGACCACCGAGAACATTCCCTCAGCATGACTATCTCC
GACCTCAATCCCGAGTAAATGACAACTCTATCGTTCTCGCTCGCCCCGAA
GGCGATATACCAACTACATGATGCTCTGATGTGTCTAGCAAAGTTCGACG
ATAGCGTGGCAATAGAAGCTGAGATTGACCTGCTTCGCTTAAGCGTGCTC
AACTCGACCAAGACGGCCTACTCGGCGTTTGTCTTCGAAGCGGATGGCTT
TTTCGAGTCCTACTCTTTCGGTAGGGTGAGGAATGGCAGCTCGTCTAGGA
CTGCTCATCCAGACAAATTCAGCTGTCAGGTGCTAATTAAGGCCCTCCTA
TCGGCCTTTAAAGGAAAGACGAGTGGACGTGACAAGGACACTTCTGTCGA
ACGGTGCGAGGTTGAGCTCCAGGAAGACCTTGATGAAACCGAATGCAGAC
TCGTCATTAGATTAATATGTGGGCTTGCAGGCGTCATCAAGCTCTACAAG
CTTACGTATGAACCTGTCCATGTGCAACATGCCATATTCGACAGATCCAA
AGCGACAAACGAATGGAGTATTGAACCCAAGTACTTGAAGGAGATAACGG
ATCATTTCGGCCCCTCAGCAGAGCATCTGGATATCTACTCCGAGCAAGGC
AAGGCTGTCTTTACCAGCTTTACCACGAAAAGCTCAGACGGAAAAGAAAT
CCTTCGCCAGCCGGTGCACACGTCCGTAGCTATTGAGAAAAGGGACTTCG
ATTACTATTTAGCAGAAGACCATCTTCACGTTGCCATCCACATGAAGGAC
TTCAAGGCGGCAATAGCACATGCTGAGACAGCAAACGCAAAGATCACCGC
CCGGTTCACCCGTCCATCTCGCCCTCTGCAATTCGCCTACGAATCTGAGG
GCGTCAAAACCGAATTTACGCTGATGACTAGAGGAGAGTCGCCCGGGGAG
GACGTTCCGGGCTCCTCTCGAGCAGCACCTCAGTTATCCGCACGTCAAAC
TCCAGCACCCGTGCAGATAAGCCAAAGGAACACGGCTCCAGAGACCGCAC
AAATGCCTCCTCCCCGCAGTCGGTCGATCCGGCCACTCACTGGGACTTCT
ACTCGGGCTTCACAATCCAACACCGAGACCCAACAACCTCCGCCATCGAT
GGAGTTCGACAGTCTGTTCGTTCCAGCGGATGACGACAGGCAATGGGACG
TACCAAATGATGAGGATGAAGGTCCAGTCGAGGACGAGCTCGGCTGGGAT
GCCACTGGAGAGCAGGTATGGCTTAATCCGCCTTCTGCTTCAGGCCTATT
ACTGACAAACCCCCAACAGACAAGCACAGGCCCTGGGTTACGAGATATCG
AACCCCGAATGGCACAGGCAAGTCACGAGGAAGAGGAGATGGGAATTCCG
CCCACTCAGCGCATGTCACAGGTAAGTCGAGCGCGTTCGCATCTATTGAT
CGTGCTGACAACCCGTAGCTGCACGGCCTCGGTCTCTTCGACTGAACCAG
CCACCCTACACCTGTACACAGCAGACCACCGAGAACATTCCCTCAGCATG
ACTATCTCCGACCTCAATCCCGAGTAAATGACAACTCTATCGTTCTCGCT
CGCCCCGAAGGCGATATACCAACTACATGATGCTCTGATGTGTCTAGCAA
AGTTCGACGATAGCGTGGCAATAGAAGCTGAGATTGACCTGCTTCGCTTA
AGCGTGCTCAACTCGACCAAGACGGCCTACTCGGCGTTTGTCTTCGAAGC
GGATGGCTTTTTCGAGTCCTACTCTTTCGGTAGGGTGAGGAATGGCAGCT
CGTCTAGGACTGCTCATCCAGACAAATTCAGCTGTCAGGTGCTAATTAAG
GCCCTCCTATCGGCCTTTAAAGGAAAGACGAGTGGACGTGACAAGGACAC
TTCTGTCGAACGGTGCGAGGTTGAGCTCCAGGAAGACCTTGATGAAACCG
AATGCAGACTCGTCATTAGATTAATATGTGGGCTTGCAGGCGTCATCAAG
CTCTACAAGCTTACGTATGAACCTGTCCATGTGCAACATGCCATATTCGA
CAGATCCAAAGCGACAAACGAATGGAGTATTGAACCCAAGTACTTGAAGG
AGATAACGGATCATTTCGGCCCCTCAGCAGAGCATCTGGATATCTACTCC
GAGCAAGGCAAGGCTGTCTTTACCAGCTTTACCACGAAAAGCTCAGACGG
AAAAGAAATCCTTCGCCAGCCGGTGCACACGTCCGTAGCTATTGAGAAAA
GGGACTTCGATTACTATTTAGCAGAAGACCATCTTCACGTTGCCATCCAC
ATGAAGGACTTCAAGGCGGCAATAGCACATGCTGAGACAGCAAACGCAAA
GATCACCGCCCGGTTCACCCGTCCATCTCGCCCTCTGCAATTCGCCTACG
AATCTGAGGGCGTCAAAACCGAATTTACGCTGATGACTAGAGGAGAGTCG
CCCGGGGAGGACGTTCCGGGCTCCTCTCGAGCAGCACCTCAGTTATCCGC
ACGTCAAACTCCAGCACCCGTGCAGATAAGCCAAAGGAACACGGCTCCAG
AGACCGCACAAATGCCTCCTCCCCGCAGTCGGTCGATCCGGCCACTCACT
GGGACTTCTACTCGGGCTTCACAATCCAACACCGAGACCCAACAACCTCC
GCCATCGATGGAGTTCGACAGTCTGTTCGTTCCAGCGGATGACGACAGGC
AATGGGACGTACCAAATGATGAGGATGAAGGTCCAGTCGAGGACGAGCTC
GGCTGGGATGCCACTGGAGAGCAGGTATGGCTTAATCCGCCTTCTGCTTC
AGGCCTATTACTGACAAACCCCCAACAGACAAGCACAGGCCCTGGGTTAC
GAGATATCGAACCCCGAATGGCACAGGCAAGTCACGAGGAAGAGGAGATG
GGAATTCCGCCCACTCAGCGCATGTCACAGGTAAGTCGAGCGCGTTCGCA
TCTATTGATCGTGCTGACAACCCGTAGCTGCACGGCCTCGGTCTCTTCGA
CTGAACCAGCCACCCTACACCTGTACACAGCAGACCACCGAGAACATTCC
CTCAGCATGACTATCTCCGACCTCAATCCCGAGTAAATGACAACTCTATC
GTTCTCGCTCGCCCCGAAGGCGATATACCAACTACATGATGCTCTGATGT
GTCTAGCAAAGTTCGACGATAGCGTGGCAATAGAAGCTGAGATTGACCTG
CTTCGCTTAAGCGTGCTCAACTCGACCAAGACGGCCTACTCGGCGTTTGT
CTTCGAAGCGGATGGCTTTTTCGAGTCCTACTCTTTCGGTAGGGTGAGGA
ATGGCAGCTCGTCTAGGACTGCTCATCCAGACAAATTCAGCTGTCAGGTG
CTAATTAAGGCCCTCCTATCGGCCTTTAAAGGAAAGACGAGTGGACGTGA
CAAGGACACTTCTGTCGAACGGTGCGAGGTTGAGCTCCAGGAAGACCTTG
ATGAAACCGAATGCAGACTCGTCATTAGATTAATATGTGGGCTTGCAGGC
GTCATCAAGCTCTACAAGCTTACGTATGAACCTGTCCATGTGCAACATGC
CATATTCGACAGATCCAAAGCGACAAACGAATGGAGTATTGAACCCAAGT
ACTTGAAGGAGATAACGGATCATTTCGGCCCCTCAGCAGAGCATCTGGAT
ATCTACTCCGAGCAAGGCAAGGCTGTCTTTACCAGCTTTACCACGAAAAG
CTCAGACGGAAAAGAAATCCTTCGCCAGCCGGTGCACACGTCCGTAGCTA
TTGAGAAAAGGGACTTCGATTACTATTTAGCAGAAGACCATCTTCACGTT
GCCATCCACATGAAGGACTTCAAGGCGGCAATAGCACATGCTGAGACAGC
AAACGCAAAGATCACCGCCCGGTTCACCCGTCCATCTCGCCCTCTGCAAT
TCGCCTACGAATCTGAGGGCGTCAAAACCGAATTTACGCTGATGACTAGA
GGAGAGTCGCCCGGGGAGGACGTTCCGGGCTCCTCTCGAGCAGCACCTCA
GTTATCCGCACGTCAAACTCCAGCACCCGTGCAGATAAGCCAAAGGAACA
CGGCTCCAGAGACCGCACAAATGCCTCCTCCCCGCAGTCGGTCGATCCGG
CCACTCACTGGGACTTCTACTCGGGCTTCACAATCCAACACCGAGACCCA
ACAACCTCCGCCATCGATGGAGTTCGACAGTCTGTTCGTTCCAGCGGATG
ACGACAGGCAATGGGACGTACCAAATGATGAGGATGAAGGTCCAGTCGAG
GACGAGCTCGGCTGGGATGCCACTGGAGAGCAGGTATGGCTTAATCCGCC
TTCTGCTTCAGGCCTATTACTGACAAACCCCCAACAGACAAGCACAGGCC
CTGGGTTACGAGATATCGAACCCCGAATGGCACAGGCAAGTCACGAGGAA
GAGGAGATGGGAATTCCGCCCACTCAGCGCATGTCACAGGTAAGTCGAGC
GCGTTCGCATCTATTGATCGTGCTGACAACCCGTAGCTGCACGGCCTCGG
TCTCTTCGACTGAACCAGCCACCCTACACCTGTACACAGCAGACCACCGA
GAACATTCCCTCAGCATGACTATCTCCGACCTCAATCCCGAGTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0030896 | checkpoint clamp complex |
Vocabulary: Biological Process
| Term | Definition |
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| GO:0000077 | DNA damage checkpoint |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006421-T1.utr5p1 | KJC3_006421-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006421-T1.utr3p1 | KJC3_006421-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR007268 |
| DBxref | PFAM:PF04139 |
| DBxref | PFAM:PF02144 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:5631849..5634087 + |
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