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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:5686618..5687787+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006432-T1 ID=KJC3_006432-T1|Name=KJC3_006432-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1170bp|location=Sequence derived from alignment at ch4:5686618..5687787+ (Aspergillus niger KJC3)
TATCAGATAAACAACCATCTCCACATCAGCAACCAAGCACCACCACTACT
CACTATACACACACTGACTTGAATCCCCCCTCAACACCGCCCCAAAATGC
CCACTCAACCCACCCCCGAAAAAAGCAAAGAAACCCTCGAAGCCAAATCC
GCCTTCAGCGCAACGCTGCTCAACATCGGCGGCACACATGCTTCCCCGCT
CGTGGAGCGCGCGCACACCATCACAGAGAACGCCTCCGCGCTGGAGAAGC
AGCAAGCGGAGCTAGAATCACATACAGCTGCACTGGCGAAGCAGAATGAG
AGCTGGGATAAGTTGGCGGGGGAGGCGAGGGACGGGTTGAAGGAGATCGG
GGATGTGCAGAATTGGGCGGAGGTGGTGGAGAGGGAGTTGTTGGTTTTGG
AGCAGACGTTGCAGTATGTTGAGGGGGGGGATAATAGGGATCATGGTGGT
GAGAATGATGATGATGAGGATGTTAATGGTGGGGATGGGCTGAATGGTAG
TATTACTAGGAATGGGACTGGGAAGGGGAAGGGGAGTACTAATAGTACTG
ATAGTACTTCTGCTGTTGAGGATGGAGGAGGTACTACTACCACTACCACT
GGAAATGGAAGTGGAGGAACATCTTGGTTTAAGTGGTGGTAGCTATCTAC
TACTAGTAGTAGTGAGAGGAACTTTTCATGTGTTTACGACTCAGATGTTT
ACTTATTATTAGGACAGCGTGTGAAATCCTCTCCGCTTACAGAGTACTTG
ATACAGTCTTTATCGCCGGTCACTTGAGCTAGAACCACAGCCCAGACGGC
TTTTACGAAGGACGAGATGGTGACCGCACGGGGTGGTGTGGGCAGAGGAA
TGATTCGACGGACATTGAGGGGAAGATCGCTGTCTGATCCTGAAAGGTTG
AGACTGGTTATCGCAACGTCCTGCAAATACTGCTCCCAGAACCTGAATGT
GCGCAGGTTTGCCTACACCTGGCGGTGCTGCACCTCTCTCCATACCGAGA
TATCATTCTGGATTATTAGAGGCATTGATTCCCCATCGAATTGAGCATGG
CTACCGCGCACGACTAGAATTGATAGAATTGAATTCGACGGTGATTTCGA
GACAAGCAGAGCCCGGAAGTAAGGGGCCCCCTAGAGTTATCTGGTCACGA
TGAAAGTACACACAAGGAAC back to topCoding sequence (CDS) from alignment at ch4:5686618..5687787+ >KJC3_006432-T1 ID=KJC3_006432-T1|Name=KJC3_006432-T1|organism=Aspergillus niger KJC3|type=CDS|length=546bp|location=Sequence derived from alignment at ch4:5686618..5687787+ (Aspergillus niger KJC3)
ATGCCCACTCAACCCACCCCCGAAAAAAGCAAAGAAACCCTCGAAGCCAA
ATCCGCCTTCAGCGCAACGCTGCTCAACATCGGCGGCACACATGCTTCCC
CGCTCGTGGAGCGCGCGCACACCATCACAGAGAACGCCTCCGCGCTGGAG
AAGCAGCAAGCGGAGCTAGAATCACATACAGCTGCACTGGCGAAGCAGAA
TGAGAGCTGGGATAAGTTGGCGGGGGAGGCGAGGGACGGGTTGAAGGAGA
TCGGGGATGTGCAGAATTGGGCGGAGGTGGTGGAGAGGGAGTTGTTGGTT
TTGGAGCAGACGTTGCAGTATGTTGAGGGGGGGGATAATAGGGATCATGG
TGGTGAGAATGATGATGATGAGGATGTTAATGGTGGGGATGGGCTGAATG
GTAGTATTACTAGGAATGGGACTGGGAAGGGGAAGGGGAGTACTAATAGT
ACTGATAGTACTTCTGCTGTTGAGGATGGAGGAGGTACTACTACCACTAC
CACTGGAAATGGAAGTGGAGGAACATCTTGGTTTAAGTGGTGGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0031083 | BLOC-1 complex |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006432-T1.utr5p1 | KJC3_006432-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006432-T1.utr3p1 | KJC3_006432-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR009395 |
| DBxref | PFAM:PF06320 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:5686618..5687787 + |
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