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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:5714436..5715234- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006442-T1 ID=KJC3_006442-T1|Name=KJC3_006442-T1|organism=Aspergillus niger KJC3|type=mRNA|length=799bp|location=Sequence derived from alignment at ch4:5714436..5715234- (Aspergillus niger KJC3)
ACCATCACCATCACCTCTACAACTATTCTCACAACTACCCTATACACCTA
CGCCTACACCCCACGCCTACACTACAACCCCGCCACCACCTTTCAATCAC
AAATTGGAACACAAAAAGGAAGAAAGGAACCCAACATGGCAGACATCTTA
ACCCAACTTCAAACCTGCCTCGACCAGGTACATCCCCCATCCCATTACCC
TCAACACCACCACCACCCCCACCCACACCCAACTAACTCCAAAACCACAG
CTCGGAACCCAATTCTACGCGACTCTATGCTACCTAACGACCTACCACGA
CAACATCCCCGCGACGCCGCCTCCCACAAGCACAACCCCCAGCGCTGCGC
CCCTACTGGCAAAAATCCCCAAGAACGCATCTACCCCCCCGGTCCCAGCG
TCCGCGCCCCAAGCAGCACAATCCCAATCGCAAGCGTCGCCACCACCACC
CGACACCACAAATCCCCAAACCGGAGGGCAGAATGCAGATCAACAGCAAC
AAAGCCCAGATGGTGAAGGTCTCCCTGCGCCGGACAGCCCCGCTACATTT
GCAGCCAGACAACGGGAACTAGCGCGCGATCTCGTCATCAAGGAGCAGCA
GATCGAGTACTTGATTAGTGTGCTGCCGGGGATAGATAGTAGTGAGGCGG
AGCAGGAGAGGCGGATCCGGGAGCTGGAGGGGGAGTTGAGGATTGTGGAG
GGGGTGAGGGAGGAGAGGAGACGCGAGTTGGGGGTGTTGAGGAGGAGGTT
GGAGGGTGTTTTGGGGGTGGTGGAGAGGGGGATTTATTCTAGGGATTAG back to topCoding sequence (CDS) from alignment at ch4:5714436..5715234- >KJC3_006442-T1 ID=KJC3_006442-T1|Name=KJC3_006442-T1|organism=Aspergillus niger KJC3|type=CDS|length=1182bp|location=Sequence derived from alignment at ch4:5714436..5715234- (Aspergillus niger KJC3)
CTCGGAACCCAATTCTACGCGACTCTATGCTACCTAACGACCTACCACGA
CAACATCCCCGCGACGCCGCCTCCCACAAGCACAACCCCCAGCGCTGCGC
CCCTACTGGCAAAAATCCCCAAGAACGCATCTACCCCCCCGGTCCCAGCG
TCCGCGCCCCAAGCAGCACAATCCCAATCGCAAGCGTCGCCACCACCACC
CGACACCACAAATCCCCAAACCGGAGGGCAGAATGCAGATCAACAGCAAC
AAAGCCCAGATGGTGAAGGTCTCCCTGCGCCGGACAGCCCCGCTACATTT
GCAGCCAGACAACGGGAACTAGCGCGCGATCTCGTCATCAAGGAGCAGCA
GATCGAGTACTTGATTAGTGTGCTGCCGGGGATAGATAGTAGTGAGGCGG
AGCAGGAGAGGCGGATCCGGGAGCTGGAGGGGGAGTTGAGGATTGTGGAG
GGGGTGAGGGAGGAGAGGAGACGCGAGTTGGGGGTGTTGAGGAGGAGGTT
GGAGGGTGTTTTGGGGGTGGTGGAGAGGGGGATTTATTCTAGGGATTAGA
TGGCAGACATCTTAACCCAACTTCAAACCTGCCTCGACCAGCTCGGAACC
CAATTCTACGCGACTCTATGCTACCTAACGACCTACCACGACAACATCCC
CGCGACGCCGCCTCCCACAAGCACAACCCCCAGCGCTGCGCCCCTACTGG
CAAAAATCCCCAAGAACGCATCTACCCCCCCGGTCCCAGCGTCCGCGCCC
CAAGCAGCACAATCCCAATCGCAAGCGTCGCCACCACCACCCGACACCAC
AAATCCCCAAACCGGAGGGCAGAATGCAGATCAACAGCAACAAAGCCCAG
ATGGTGAAGGTCTCCCTGCGCCGGACAGCCCCGCTACATTTGCAGCCAGA
CAACGGGAACTAGCGCGCGATCTCGTCATCAAGGAGCAGCAGATCGAGTA
CTTGATTAGTGTGCTGCCGGGGATAGATAGTAGTGAGGCGGAGCAGGAGA
GGCGGATCCGGGAGCTGGAGGGGGAGTTGAGGATTGTGGAGGGGGTGAGG
GAGGAGAGGAGACGCGAGTTGGGGGTGTTGAGGAGGAGGTTGGAGGGTGT
TTTGGGGGTGGTGGAGAGGGGGATTTATTCTAGGGATTAGATGGCAGACA
TCTTAACCCAACTTCAAACCTGCCTCGACCAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016592 | mediator complex |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006442-T1.utr5p1 | KJC3_006442-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09265SHM |
| DBxref | InterPro:IPR037212 |
| DBxref | InterPro:IPR021384 |
| DBxref | PFAM:PF11221 |
| Product | RNA polymerase II mediator complex subunit |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:5714436..5715234 - |
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