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KJC3_006444-T1, KJC3_006444-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006444-T1
Unique NameKJC3_006444-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:5716229..5717246-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006444-T1 ID=KJC3_006444-T1|Name=KJC3_006444-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1018bp|location=Sequence derived from alignment at ch4:5716229..5717246- (Aspergillus niger KJC3)
CTCTCCACTTCCGGAGCGTATTTGCTACCATTGCTATCGGAACTACAAGG
TAGATATCTAACACACTACGTATATAGCCCTGAATCTACCGTCATCATGC
TTCTCGACGAGAATCCCGCTGGTGTATGTTACTTTTGCCCCTTCATCATG
CCCACTGCTGACTCTCCAGCTCATCAACCACACCATCGGCAACTTCAACA
TCCACCCCGATAAACAAGCTGTCACCCGCATCAATGACTCGCTCGCCGCA
CTACAACAATCGCGCGAATTGCGTACACGCGAAGCCGAATCGGCCCTGCG
CAAGCTCTCGCGGCACCTGTCCGCGCTGACGGCCCAGCATGAGGAGGCCG
TGACGGCGCATGACTCTGGCAAGCACGCGGCGGAGATGGTCGAGCTGGAC
ACGAAGAAATTCCGTATTGCCAAGTCGGCTACCGAGCTGGAGATTGAAAG
CGAGCGCTTAGAAGGCGAGCTGGAGATGCTGAAGGAGCGACTGGCCGATC
TGGAGGCGCAGGGGTTGGAGGGCGATGAACCGACGCGCCGCGAGCGCGAG
ATGGATGATGCGACGCTGTGAGTACTTCTCATTTGTTTGACATGTAGTAC
CCGGAGGCTGACTATTTGGTAGGCTGCGATTGAAAATCTACCGGTCCTTG
GGCGTGGATATCGAGGCGGACGATGCAGGCAACTTCACCAAGGCGGTGAT
CCGCAATAGTCGCAAGGGCGATGTGCATGTGGTGAACATTGACCCGAAGT
TCTCGCGGTTCTTCTATTCGAACTACTTCTGGTCGACGATGCAGGGGTAG
ATGTGTTTGATGAGATGGATGGTTCGGATGGCGTTTACGGATATACCCTG
GCTTGATATGACAATACTATACTATTATTACATTCTATACGATATGCTCT
ATATTCAAGTAGACCTACTCTTCAACTCTCTCCTCACAAGCTCCCTCTCC
TCATCACTCAACCCACTCACCCTCCCGTCCCTAGCATACAGCAATGGCTT
CTCAAACGGAAACAACCG
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Coding sequence (CDS) from alignment at ch4:5716229..5717246-

>KJC3_006444-T1 ID=KJC3_006444-T1|Name=KJC3_006444-T1|organism=Aspergillus niger KJC3|type=CDS|length=1809bp|location=Sequence derived from alignment at ch4:5716229..5717246- (Aspergillus niger KJC3)
GCTGCGATTGAAAATCTACCGGTCCTTGGGCGTGGATATCGAGGCGGACG
ATGCAGGCAACTTCACCAAGGCGGTGATCCGCAATAGTCGCAAGGGCGAT
GTGCATGTGGTGAACATTGACCCGAAGTTCTCGCGGTTCTTCTATTCGAA
CTACTTCTGGTCGACGATGCAGGGGTAGCTCATCAACCACACCATCGGCA
ACTTCAACATCCACCCCGATAAACAAGCTGTCACCCGCATCAATGACTCG
CTCGCCGCACTACAACAATCGCGCGAATTGCGTACACGCGAAGCCGAATC
GGCCCTGCGCAAGCTCTCGCGGCACCTGTCCGCGCTGACGGCCCAGCATG
AGGAGGCCGTGACGGCGCATGACTCTGGCAAGCACGCGGCGGAGATGGTC
GAGCTGGACACGAAGAAATTCCGTATTGCCAAGTCGGCTACCGAGCTGGA
GATTGAAAGCGAGCGCTTAGAAGGCGAGCTGGAGATGCTGAAGGAGCGAC
TGGCCGATCTGGAGGCGCAGGGGTTGGAGGGCGATGAACCGACGCGCCGC
GAGCGCGAGATGGATGATGCGACGCTATGCTTCTCGACGAGAATCCCGCT
GGTGCTGCGATTGAAAATCTACCGGTCCTTGGGCGTGGATATCGAGGCGG
ACGATGCAGGCAACTTCACCAAGGCGGTGATCCGCAATAGTCGCAAGGGC
GATGTGCATGTGGTGAACATTGACCCGAAGTTCTCGCGGTTCTTCTATTC
GAACTACTTCTGGTCGACGATGCAGGGGTAGCTCATCAACCACACCATCG
GCAACTTCAACATCCACCCCGATAAACAAGCTGTCACCCGCATCAATGAC
TCGCTCGCCGCACTACAACAATCGCGCGAATTGCGTACACGCGAAGCCGA
ATCGGCCCTGCGCAAGCTCTCGCGGCACCTGTCCGCGCTGACGGCCCAGC
ATGAGGAGGCCGTGACGGCGCATGACTCTGGCAAGCACGCGGCGGAGATG
GTCGAGCTGGACACGAAGAAATTCCGTATTGCCAAGTCGGCTACCGAGCT
GGAGATTGAAAGCGAGCGCTTAGAAGGCGAGCTGGAGATGCTGAAGGAGC
GACTGGCCGATCTGGAGGCGCAGGGGTTGGAGGGCGATGAACCGACGCGC
CGCGAGCGCGAGATGGATGATGCGACGCTATGCTTCTCGACGAGAATCCC
GCTGGTGCTGCGATTGAAAATCTACCGGTCCTTGGGCGTGGATATCGAGG
CGGACGATGCAGGCAACTTCACCAAGGCGGTGATCCGCAATAGTCGCAAG
GGCGATGTGCATGTGGTGAACATTGACCCGAAGTTCTCGCGGTTCTTCTA
TTCGAACTACTTCTGGTCGACGATGCAGGGGTAGCTCATCAACCACACCA
TCGGCAACTTCAACATCCACCCCGATAAACAAGCTGTCACCCGCATCAAT
GACTCGCTCGCCGCACTACAACAATCGCGCGAATTGCGTACACGCGAAGC
CGAATCGGCCCTGCGCAAGCTCTCGCGGCACCTGTCCGCGCTGACGGCCC
AGCATGAGGAGGCCGTGACGGCGCATGACTCTGGCAAGCACGCGGCGGAG
ATGGTCGAGCTGGACACGAAGAAATTCCGTATTGCCAAGTCGGCTACCGA
GCTGGAGATTGAAAGCGAGCGCTTAGAAGGCGAGCTGGAGATGCTGAAGG
AGCGACTGGCCGATCTGGAGGCGCAGGGGTTGGAGGGCGATGAACCGACG
CGCCGCGAGCGCGAGATGGATGATGCGACGCTATGCTTCTCGACGAGAAT
CCCGCTGGT
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SPC24KJC3_006444Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006444-T1KJC3_006444-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006444-T1.cdsKJC3_006444-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006444-T1.utr3p1KJC3_006444-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006444-T1.exon3KJC3_006444-T1.exon3Aspergillus niger KJC3exon
KJC3_006444-T1.exon2KJC3_006444-T1.exon2Aspergillus niger KJC3exon
KJC3_006444-T1.exon1KJC3_006444-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006444-T1.utr5p1KJC3_006444-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR038066
DBxrefInterPro:IPR013252
DBxrefPFAM:PF08286
Productkinetochore-associated Ndc80 complex subunit spc24
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:5716229..5717246 -
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