You are here

Home

KJC3_006475-T1, KJC3_006475-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006475-T1
Unique NameKJC3_006475-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:5815311..5816326-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006475-T1 ID=KJC3_006475-T1|Name=KJC3_006475-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1016bp|location=Sequence derived from alignment at ch4:5815311..5816326- (Aspergillus niger KJC3)
CGCAGAACCTCCTCTCTTTCTCGGTTTCTCCAGACCTCCTCCCCTCCTCC
CTCCGCCTCATCCCACCCCCCTCCAATCAACACCCCAAGTTTCCTTTTTA
AGGTTACTATACCTTCAATCTATCACAATGGGTGCCATTCCTGAAGTTGA
CCCCGATGAGCCCGTCGAGACCAAGCCCTTCAAGTTCGTGACTGGTGAGC
TTTCCTTTCCCACCTCCAATGGGTCCAATTCCTCCCGTAACTAAGGTCAA
TTGCTAACTATTTCACAGCTGGTACGTCTAGGATAGGTTTTCGAGTATTC
GCAGCGCCGTCGCTGTCGTCGCGATCGAGGTAGTTTTGTGTGCTGACATA
TGAGGTGATGAATAGGCTATGACGCTCGTTTCCCCCAGCAGAACCAGTAC
GTGATTTTCGCACACCTCTCCGCTCAATCTCCCCAGTACGAACTGCAATA
ACTAACCACACATTTTTTTTTCCTCCTCACAGGACCAAGCACTGCTGGCA
GAACTACGTCGACTACCACAAGTGTGTCACCGCCAAGGGCGAGGACTTCC
GCCCATGCCGTCAGGTTAGCTAGCTACTGCCTCCCACCCATTTTCGTCAC
GAAGTGTATCCAATCCTAACCACCATGGAACCGAAAACAGTTCTACCACG
CCTTCCGCTCTCTCTGCCCCAAGGCCTGGACTGACAGATGGGACGGCCAG
CGCGGTATGTAGCCCCATTATATATGATCCTATACCGTATATATCAAACA
GCAGGATACTAACAAAAACTTACAGAGGCTGGTAACTTCCCCGCTCGTCT
CGACCGGTAGACGCATTAACTACTTTGTTCACAGTTAAATTTGAAAGTTC
AAAGTTGTTTTCGTGTGTCTTCTTGTCACTGTCAACGTGTACTCTACCCT
TTAAGTTGGATCCGGCGAGAATTGTTAGCTCTGACTCCCCAGGCACAATT
CGGCTGGGTGGGAGACGAGTGTATATAGACTCGCGTAGTTGGAATGATGT
GTCAAACAAAACCAGC
back to top

Coding sequence (CDS) from alignment at ch4:5815311..5816326-

>KJC3_006475-T1 ID=KJC3_006475-T1|Name=KJC3_006475-T1|organism=Aspergillus niger KJC3|type=CDS|length=1395bp|location=Sequence derived from alignment at ch4:5815311..5816326- (Aspergillus niger KJC3)
AGGCTGGTAACTTCCCCGCTCGTCTCGACCGGTAGTTCTACCACGCCTTC
CGCTCTCTCTGCCCCAAGGCCTGGACTGACAGATGGGACGGCCAGCGCGG
ACCAAGCACTGCTGGCAGAACTACGTCGACTACCACAAGTGTGTCACCGC
CAAGGGCGAGGACTTCCGCCCATGCCGTCAGGCTATGACGCTCGTTTCCC
CCAGCAGAACCAATGGGTGCCATTCCTGAAGTTGACCCCGATGAGCCCGT
CGAGACCAAGCCCTTCAAGTTCGTGACTGAGGCTGGTAACTTCCCCGCTC
GTCTCGACCGGTAGTTCTACCACGCCTTCCGCTCTCTCTGCCCCAAGGCC
TGGACTGACAGATGGGACGGCCAGCGCGGACCAAGCACTGCTGGCAGAAC
TACGTCGACTACCACAAGTGTGTCACCGCCAAGGGCGAGGACTTCCGCCC
ATGCCGTCAGGCTATGACGCTCGTTTCCCCCAGCAGAACCAATGGGTGCC
ATTCCTGAAGTTGACCCCGATGAGCCCGTCGAGACCAAGCCCTTCAAGTT
CGTGACTGAGGCTGGTAACTTCCCCGCTCGTCTCGACCGGTAGTTCTACC
ACGCCTTCCGCTCTCTCTGCCCCAAGGCCTGGACTGACAGATGGGACGGC
CAGCGCGGACCAAGCACTGCTGGCAGAACTACGTCGACTACCACAAGTGT
GTCACCGCCAAGGGCGAGGACTTCCGCCCATGCCGTCAGGCTATGACGCT
CGTTTCCCCCAGCAGAACCAATGGGTGCCATTCCTGAAGTTGACCCCGAT
GAGCCCGTCGAGACCAAGCCCTTCAAGTTCGTGACTGAGGCTGGTAACTT
CCCCGCTCGTCTCGACCGGTAGTTCTACCACGCCTTCCGCTCTCTCTGCC
CCAAGGCCTGGACTGACAGATGGGACGGCCAGCGCGGACCAAGCACTGCT
GGCAGAACTACGTCGACTACCACAAGTGTGTCACCGCCAAGGGCGAGGAC
TTCCGCCCATGCCGTCAGGCTATGACGCTCGTTTCCCCCAGCAGAACCAA
TGGGTGCCATTCCTGAAGTTGACCCCGATGAGCCCGTCGAGACCAAGCCC
TTCAAGTTCGTGACTGAGGCTGGTAACTTCCCCGCTCGTCTCGACCGGTA
GTTCTACCACGCCTTCCGCTCTCTCTGCCCCAAGGCCTGGACTGACAGAT
GGGACGGCCAGCGCGGACCAAGCACTGCTGGCAGAACTACGTCGACTACC
ACAAGTGTGTCACCGCCAAGGGCGAGGACTTCCGCCCATGCCGTCAGGCT
ATGACGCTCGTTTCCCCCAGCAGAACCAATGGGTGCCATTCCTGAAGTTG
ACCCCGATGAGCCCGTCGAGACCAAGCCCTTCAAGTTCGTGACTG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
COX12KJC3_006475Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006475-T1KJC3_006475-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006475-T1.cdsKJC3_006475-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006475-T1.utr3p1KJC3_006475-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006475-T1.exon5KJC3_006475-T1.exon5Aspergillus niger KJC3exon
KJC3_006475-T1.exon4KJC3_006475-T1.exon4Aspergillus niger KJC3exon
KJC3_006475-T1.exon3KJC3_006475-T1.exon3Aspergillus niger KJC3exon
KJC3_006475-T1.exon2KJC3_006475-T1.exon2Aspergillus niger KJC3exon
KJC3_006475-T1.exon1KJC3_006475-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006475-T1.utr5p1KJC3_006475-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09265JVH
DBxrefInterPro:IPR003213
DBxrefInterPro:IPR036549
DBxrefPFAM:PF02297
ProductCytochrome c oxidase subunit 6B
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:5815311..5816326 -
Powered by Drupal