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KJC3_006477-T1, KJC3_006477-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006477-T1
Unique NameKJC3_006477-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:5816681..5818137-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006477-T1 ID=KJC3_006477-T1|Name=KJC3_006477-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1457bp|location=Sequence derived from alignment at ch4:5816681..5818137- (Aspergillus niger KJC3)
GACGCGGTCGCTCTTTCTCTCCCCCTCCTCTCAGTGACGTCTTCCATCCT
AGCCCATTTCGGAGATTTGCTACGACCGACCATGAGCGAGAAAGCACGCT
TAAAATGTACCGTCTACGTGGGGGGTCTTGACCAGGCCGTGACGATGCAG
ACGCTGGCCGAAGCATTCGTTCCCTTTGGTGAAGTGGTCGATATTACGCT
CCCCAAACCCGACCTTCCGAACTCCAACGAGCTCCACCGCGGTTTTGGAT
ATGTGGAGTTTGATCTGCCCGAGGATGCAAAAGAGGCGATCGACAATATG
GATGGAAGCGAACTATATGGCCGGACAATCAAGGTTGCTGCTGCTAAGCC
GCAGAAGGACAGCAACGAAGGACTCGGCAGCAAGACAGCTATCTGGGAAC
AGGTACGCCATGACGTTCATCTTGTCATTATAGATCATTTGCTAATTACG
TATGAAACAATAGGAGGGGTACTTGGCCAAGTATGCCGTCGACGAGGAAG
ACAAATTGGCTGCCGAGGGAGGCGAGACCGATGGAGCCGAACGTCAAGAT
CCCATGCAAGGACTCGAGGAACTGGACGTGGCGGGACCCAAGCCGGAATG
AGCTCTACGATAAAATCCACTCACGCCAGGGGAAACTGGCGAAACGAAGA
TAAAAGAGAAGCCAAGAAGCGGGCGACAGTAATATTGCGATATTACACCA
TCAGGAACCCTTCGTTTAAAGCCGTACTATTTACACGCGCTCCAACCCTG
AGCCTGAGAATTTTCGAGCATTCCATTCTTATCTCTGGCCACGCGACAAG
GCCTGACTACCCCGTGAATGATACAGATCGCCGAAAAATCAAACAAAGAA
TCGCCCATTGCAATTTGAAATCAAATGTGATGGTACATTCTTAGTGCTCG
CGGTCCTCGGGGCTGTTGCGGTACAGACGGAGGGTCTTGTCGGTCATGAG
CTTGCGGGTACTGGAGTAGATGGCAGCACCGACGGCGACACTGCGATGGA
ACTGCGTCAGTGGAGGGCAGATGAAGACTGCAGGAGTGGGAGGGGAGAGG
AGGGTAGGAGGAGGCGGTCGGGATTAGATTTCACGGCATGTCATGTAGAA
GCCAAAGGATATCAGGAAATAAACATACCCAAGGACCAGACCTGTAGGAT
TCAAGAAACAATCGTTAGCTCTGCTGTAAACCAATGGCAAGGCGTTAATC
ATTGAACCGCGACGTACCGAGAGGGATCAACTCCGGGGGAACTCTCTTCA
GAGTGCGCAGACGCTGAGAGATAGTGTGGGCTAGAAGCCAGGCGTTAGTC
CAATTCCCAACTCCAACAACACAATTCCATCAATCAAGTATCCGTCCTAT
GCGCAAACCGGGGAGGAAACCCCATACCGCTCTGGTTTTCCTTCTGTAGC
CACTTGTTAGCCACCCTGCCACACGTAATTTTTCCCCAACTTCCACGCCA
ACACGGG
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Coding sequence (CDS) from alignment at ch4:5816681..5818137-

>KJC3_006477-T1 ID=KJC3_006477-T1|Name=KJC3_006477-T1|organism=Aspergillus niger KJC3|type=CDS|length=918bp|location=Sequence derived from alignment at ch4:5816681..5818137- (Aspergillus niger KJC3)
GAGGGGTACTTGGCCAAGTATGCCGTCGACGAGGAAGACAAATTGGCTGC
CGAGGGAGGCGAGACCGATGGAGCCGAACGTCAAGATCCCATGCAAGGAC
TCGAGGAACTGGACGTGGCGGGACCCAAGCCGGAATGAATGAGCGAGAAA
GCACGCTTAAAATGTACCGTCTACGTGGGGGGTCTTGACCAGGCCGTGAC
GATGCAGACGCTGGCCGAAGCATTCGTTCCCTTTGGTGAAGTGGTCGATA
TTACGCTCCCCAAACCCGACCTTCCGAACTCCAACGAGCTCCACCGCGGT
TTTGGATATGTGGAGTTTGATCTGCCCGAGGATGCAAAAGAGGCGATCGA
CAATATGGATGGAAGCGAACTATATGGCCGGACAATCAAGGTTGCTGCTG
CTAAGCCGCAGAAGGACAGCAACGAAGGACTCGGCAGCAAGACAGCTATC
TGGGAACAGGAGGGGTACTTGGCCAAGTATGCCGTCGACGAGGAAGACAA
ATTGGCTGCCGAGGGAGGCGAGACCGATGGAGCCGAACGTCAAGATCCCA
TGCAAGGACTCGAGGAACTGGACGTGGCGGGACCCAAGCCGGAATGAATG
AGCGAGAAAGCACGCTTAAAATGTACCGTCTACGTGGGGGGTCTTGACCA
GGCCGTGACGATGCAGACGCTGGCCGAAGCATTCGTTCCCTTTGGTGAAG
TGGTCGATATTACGCTCCCCAAACCCGACCTTCCGAACTCCAACGAGCTC
CACCGCGGTTTTGGATATGTGGAGTTTGATCTGCCCGAGGATGCAAAAGA
GGCGATCGACAATATGGATGGAAGCGAACTATATGGCCGGACAATCAAGG
TTGCTGCTGCTAAGCCGCAGAAGGACAGCAACGAAGGACTCGGCAGCAAG
ACAGCTATCTGGGAACAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_006477KJC3_006477Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006477-T1KJC3_006477-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006477-T1.cdsKJC3_006477-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006477-T1.utr3p1KJC3_006477-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006477-T1.exon2KJC3_006477-T1.exon2Aspergillus niger KJC3exon
KJC3_006477-T1.exon1KJC3_006477-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006477-T1.utr5p1KJC3_006477-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR035979
DBxrefInterPro:IPR034168
DBxrefInterPro:IPR012677
DBxrefInterPro:IPR000504
DBxrefPFAM:PF00076
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:5816681..5818137 -
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