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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:6158826..6159703+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006604-T1 ID=KJC3_006604-T1|Name=KJC3_006604-T1|organism=Aspergillus niger KJC3|type=mRNA|length=878bp|location=Sequence derived from alignment at ch4:6158826..6159703+ (Aspergillus niger KJC3)
CAATCTTATCCAGAAAGCACCCCATCATGGCGCACAAAATCACAGTCACC
CTGCCCCAGCTGGCCAAGATGATCGACCACTCGCTCCTCCACCCCACCAT
GACCGACGCCGACATCATAGCCGGCCTTAAAATTGCCCGCGACAACCACG
TCGCAACCGCCTGCGTCAAACCCTACGCCATCCCCTTAGCTAAGAAAGAG
CTCGCCGGATCAGACGTTCTCGTCTGTCCGGTCATTGGATTCCCCCACGG
CAACAGCACCACCGAGATCAAGGTCCTCGAAGCCACCGCTGCCGCGAAGG
CTGGCGGAGCCGAGATCGACATGGTGGTCAATGTGGGCAAGGTTCTCGGG
GAGGAATGGGACTATGTGGCGGAGGAGATTCGCCAGATCAACGATGCTGT
GGTTGCCAATGGGGCAATTTTGAAGGTCATCTTCGAGAATGATTACTTGC
GCTCTGAGCATATTGCTCGTCTGTGTGAGATATGTACCCAGATTGGAGTG
GCCTTTGTCAAGACTTCGACTGGATATGGATTTGTCAAGCAGCAGGATGG
CTCGTATAATTACAAGGGTGCCACGGTACAGGCTGTTAAGTTGATGAGGG
AGAAGTCTGGCGAGAAGGTGCAAATCAAAGCTGCCGGTGGAGTTCGCACG
TTGGATGATCTGCTACATGTCATGAGTTTGGGTGTTACTCGCATTGGAGC
CACGGCTACTGTGGCAATTTTGGAGGATGCCAAGAAGCGTGGGATAGGGA
ACGAGCCTGTTGAGGTGGCGTTTAAGCCAATGGCGGAGGCATCTGGAGGC
TACTGAGGTTGCATTACTGGCTTCTATTTTCTCTATCATTTATGTTCGCT
ACAATTTTAAGTCACTCCCTTTGCCCGG back to topCoding sequence (CDS) from alignment at ch4:6158826..6159703+ >KJC3_006604-T1 ID=KJC3_006604-T1|Name=KJC3_006604-T1|organism=Aspergillus niger KJC3|type=CDS|length=780bp|location=Sequence derived from alignment at ch4:6158826..6159703+ (Aspergillus niger KJC3)
ATGGCGCACAAAATCACAGTCACCCTGCCCCAGCTGGCCAAGATGATCGA
CCACTCGCTCCTCCACCCCACCATGACCGACGCCGACATCATAGCCGGCC
TTAAAATTGCCCGCGACAACCACGTCGCAACCGCCTGCGTCAAACCCTAC
GCCATCCCCTTAGCTAAGAAAGAGCTCGCCGGATCAGACGTTCTCGTCTG
TCCGGTCATTGGATTCCCCCACGGCAACAGCACCACCGAGATCAAGGTCC
TCGAAGCCACCGCTGCCGCGAAGGCTGGCGGAGCCGAGATCGACATGGTG
GTCAATGTGGGCAAGGTTCTCGGGGAGGAATGGGACTATGTGGCGGAGGA
GATTCGCCAGATCAACGATGCTGTGGTTGCCAATGGGGCAATTTTGAAGG
TCATCTTCGAGAATGATTACTTGCGCTCTGAGCATATTGCTCGTCTGTGT
GAGATATGTACCCAGATTGGAGTGGCCTTTGTCAAGACTTCGACTGGATA
TGGATTTGTCAAGCAGCAGGATGGCTCGTATAATTACAAGGGTGCCACGG
TACAGGCTGTTAAGTTGATGAGGGAGAAGTCTGGCGAGAAGGTGCAAATC
AAAGCTGCCGGTGGAGTTCGCACGTTGGATGATCTGCTACATGTCATGAG
TTTGGGTGTTACTCGCATTGGAGCCACGGCTACTGTGGCAATTTTGGAGG
ATGCCAAGAAGCGTGGGATAGGGAACGAGCCTGTTGAGGTGGCGTTTAAG
CCAATGGCGGAGGCATCTGGAGGCTACTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005737 | cytoplasm |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009264 | deoxyribonucleotide catabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004139 | deoxyribose-phosphate aldolase activity |
| GO:0003824 | catalytic activity |
| GO:0016829 | lyase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006604-T1.utr5p1 | KJC3_006604-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006604-T1.utr3p1 | KJC3_006604-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_4.14 |
| DBxref | InterPro:IPR028581 |
| DBxref | InterPro:IPR011343 |
| DBxref | InterPro:IPR013785 |
| DBxref | InterPro:IPR002915 |
| DBxref | PFAM:PF01791 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:6158826..6159703 + |
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