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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:6202062..6202992+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006622-T1 ID=KJC3_006622-T1|Name=KJC3_006622-T1|organism=Aspergillus niger KJC3|type=mRNA|length=931bp|location=Sequence derived from alignment at ch4:6202062..6202992+ (Aspergillus niger KJC3)
ATGGAAGGAAAGTGATTGCGACAGATGAGGGGAAGATCCCTGCTCTTCGT
CGCCTATATAGAAGAGTAGAAATGGTAGAGAAGACCAACATCCAGTATCC
CGATCCTTAAGCTGTTCCAGATTTTCACGGTCGCATATCCTTCGAACCTC
CTTCCATCCAACATGTCGCCCTCCCTCCATCCTCTCCTCGACAACGGCAT
CACCAAAGGGGACCCTAACTTCCCTGGCGGTAACCTCTACTGCAAATGCT
CCTCCGACAAGGTGGTGGTTAAGCTGGCCAGCAATGTCGCTCACAATCAC
GCCTGTGGCTGCTCTAAGTGCTGGAAGCCCGCCGGATCGTTGTTTTCCAT
CGTCGGAGTAGTTCCCCGCGACGCCGTCTCCGTCACCGAACACGCAGAGA
AGTTGTCCATCGTGGACGCGTCCGCCGCTATCCAGAGATACGCCTGCAAG
GGCTGCGGGGTACACATGTTCGGTCGCATCGAGAAAGACCACCCTTTCAA
GGGCCTGGACTTTGTGCACGCCGAGCTGTCCGACCAGAAGGGCTGGCAGG
AGCCTCAGTTCGCGGGATTCGTCTCCTCCATCATCGAGCAGGGCTTCCAC
CCCAAGGGCATGGAGGAAGTGCGCTCCAAGTTCCACTCCCTGGGTCTCGA
GACATACGACGCGCTGTCGCCGGCATTGATGGATCTGATTGCCACCTTCA
CGGCTCAAAGGGCGGGGGTGTTGTCTGCGAACCTCTAAATCATCAATAAC
ATATTTAGCAAGGCGGAATATGAAGGATATTGTGGAAGGATAAAAAGGGC
AAAAAATTGTAGCTGTGCTACACGAAATGTATATACCGAATGAAATCAAT
CAAGCGTTCAGCTTTCACATTGGAAAAGAACCCAATAGTGCTCCAGGCTT
CGCAACCATCACCATGCATCGGGAGTAATTG back to topCoding sequence (CDS) from alignment at ch4:6202062..6202992+ >KJC3_006622-T1 ID=KJC3_006622-T1|Name=KJC3_006622-T1|organism=Aspergillus niger KJC3|type=CDS|length=576bp|location=Sequence derived from alignment at ch4:6202062..6202992+ (Aspergillus niger KJC3)
ATGTCGCCCTCCCTCCATCCTCTCCTCGACAACGGCATCACCAAAGGGGA
CCCTAACTTCCCTGGCGGTAACCTCTACTGCAAATGCTCCTCCGACAAGG
TGGTGGTTAAGCTGGCCAGCAATGTCGCTCACAATCACGCCTGTGGCTGC
TCTAAGTGCTGGAAGCCCGCCGGATCGTTGTTTTCCATCGTCGGAGTAGT
TCCCCGCGACGCCGTCTCCGTCACCGAACACGCAGAGAAGTTGTCCATCG
TGGACGCGTCCGCCGCTATCCAGAGATACGCCTGCAAGGGCTGCGGGGTA
CACATGTTCGGTCGCATCGAGAAAGACCACCCTTTCAAGGGCCTGGACTT
TGTGCACGCCGAGCTGTCCGACCAGAAGGGCTGGCAGGAGCCTCAGTTCG
CGGGATTCGTCTCCTCCATCATCGAGCAGGGCTTCCACCCCAAGGGCATG
GAGGAAGTGCGCTCCAAGTTCCACTCCCTGGGTCTCGAGACATACGACGC
GCTGTCGCCGGCATTGATGGATCTGATTGCCACCTTCACGGCTCAAAGGG
CGGGGGTGTTGTCTGCGAACCTCTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016846 | carbon-sulfur lyase activity |
| GO:0051907 | S-(hydroxymethyl)glutathione synthase activity |
| GO:0008270 | zinc ion binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0046294 | formaldehyde catabolic process |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006622-T1.utr5p1 | KJC3_006622-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006622-T1.utr3p1 | KJC3_006622-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR011057 |
| DBxref | InterPro:IPR006913 |
| DBxref | InterPro:IPR014185 |
| DBxref | PFAM:PF04828 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:6202062..6202992 + |
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