You are here

Home

KJC3_006673-T1, KJC3_006673-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006673-T1
Unique NameKJC3_006673-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch5:55126..56549-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006673-T1 ID=KJC3_006673-T1|Name=KJC3_006673-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1424bp|location=Sequence derived from alignment at ch5:55126..56549- (Aspergillus niger KJC3)
CTCACAGGCTATATATGTAACCTTTCCCACCACAGCTGCAGTCACTGCAA
TGCGACTCAGTGGAGTCCGGCGCATATACTAACCATCTTTAAAGGCAGTT
TATTGCATCCTCAACCCCTCAGCCTGATCCCCGCACCGACTCCGATATCG
TTCAGTGCAGAACAGCATTCGGAGTGGCTGCCCGCTGATAAGCGTTCGGG
AAGCCATCCCGACCGGATTCTTTTCCATCCCCGCAGCCTCCAAGTATATA
ATCAGCTCCCCTCCAGCACGTCATTGAACCAAAGATTCACTCAATTGATA
CCCCTATCTCCTACACACAATCCCCATAGAATCCATAGACCTCACCATCA
CCATGGGCTCCTCCGTCGCCGTCACCCCCCAGCCTCATATCCCCAAAGCC
GGCGTCTGGTGCCCCGCCGTGACCTTCTTCGATCACAGCACCGACACCAT
CGACCTCGATGCCCAAAAGAAATACTACCAGTACCTCTCGACCACCGGCC
TCGCTGGCCTCGTCATTCTCGGCACCAACTCCGAAGCCTTCCTCCTCACC
CGCGAAGAACGCGCCCAACTCATCGCCACGGCCCGTGCCGCCGTCGGCCC
TGACTACCCCCTCATGGCTGGCTGCGGTGCCCACTCCACCAAGCAAGTGC
TGGAACTCGCCGAGGACGCCGCCGCTGCGGGCGCAAACTACATCCTTGTC
CTGCCCCCGGCATACTTCGGCAAAGCCACAACCCCGGCCGTCGTGAAGCG
CTTCTTCGCGGACGTCGCGCGCAAGAGTCCCCTGCCTGTCGTGGTGTACA
ACTTCCCGGGTGTCTGTAACGGCGTGGATCTGGATTCGGAGACCATCACC
GCCATCGTGCGCGAGTCGGCGGCATCGAGCACCAATGGGGTCTCGAACGT
CGTGGGTGTCAAGCTGACGTGTGGGTCGGTGGGCAAGATTACGAGGCTGG
CGGCCACTTTCTCCAAGGAGGAGTTTGCAATCTATGGTGGTCAGTCGGAT
TTCCTGATCGGTGGCTTGGCTGCGGGCTCTGCTGGGTGCATTGCTGCTTT
TGCCAATGTGTTCCCAAAGACGGCATCGAAGATCTATGACCTTTATGTCG
CTGGTAAGATCCAGGAGGCAGTGGAGTTGCAGCGCCAGGCAGCGCTCGCG
GAGAGTCCTTGCAAGAGTGGAATTGCTGCCACCAAGTACGCGGCTGCGAT
CTTCTCGGCTCGCGCGGCGGGCATTGAGGGGGCTGAGGAGAAGCTGAAGC
CCCGGACGCCGTATGAGGAACCGGCGGAGGGTGCGAAGAAGGGGGTGCAA
GACTTGATGAGCGCCGTAGCCAAGGTCGAAGGAAGTATATAAACTGTATG
ATTTGAACCATGAAGATATGAGATATGTATGCGAATCTAAAATAGCTTGG
CTTTCCTAAGATAATAAAGGACCG
back to top

Coding sequence (CDS) from alignment at ch5:55126..56549-

>KJC3_006673-T1 ID=KJC3_006673-T1|Name=KJC3_006673-T1|organism=Aspergillus niger KJC3|type=CDS|length=990bp|location=Sequence derived from alignment at ch5:55126..56549- (Aspergillus niger KJC3)
ATGGGCTCCTCCGTCGCCGTCACCCCCCAGCCTCATATCCCCAAAGCCGG
CGTCTGGTGCCCCGCCGTGACCTTCTTCGATCACAGCACCGACACCATCG
ACCTCGATGCCCAAAAGAAATACTACCAGTACCTCTCGACCACCGGCCTC
GCTGGCCTCGTCATTCTCGGCACCAACTCCGAAGCCTTCCTCCTCACCCG
CGAAGAACGCGCCCAACTCATCGCCACGGCCCGTGCCGCCGTCGGCCCTG
ACTACCCCCTCATGGCTGGCTGCGGTGCCCACTCCACCAAGCAAGTGCTG
GAACTCGCCGAGGACGCCGCCGCTGCGGGCGCAAACTACATCCTTGTCCT
GCCCCCGGCATACTTCGGCAAAGCCACAACCCCGGCCGTCGTGAAGCGCT
TCTTCGCGGACGTCGCGCGCAAGAGTCCCCTGCCTGTCGTGGTGTACAAC
TTCCCGGGTGTCTGTAACGGCGTGGATCTGGATTCGGAGACCATCACCGC
CATCGTGCGCGAGTCGGCGGCATCGAGCACCAATGGGGTCTCGAACGTCG
TGGGTGTCAAGCTGACGTGTGGGTCGGTGGGCAAGATTACGAGGCTGGCG
GCCACTTTCTCCAAGGAGGAGTTTGCAATCTATGGTGGTCAGTCGGATTT
CCTGATCGGTGGCTTGGCTGCGGGCTCTGCTGGGTGCATTGCTGCTTTTG
CCAATGTGTTCCCAAAGACGGCATCGAAGATCTATGACCTTTATGTCGCT
GGTAAGATCCAGGAGGCAGTGGAGTTGCAGCGCCAGGCAGCGCTCGCGGA
GAGTCCTTGCAAGAGTGGAATTGCTGCCACCAAGTACGCGGCTGCGATCT
TCTCGGCTCGCGCGGCGGGCATTGAGGGGGCTGAGGAGAAGCTGAAGCCC
CGGACGCCGTATGAGGAACCGGCGGAGGGTGCGAAGAAGGGGGTGCAAGA
CTTGATGAGCGCCGTAGCCAAGGTCGAAGGAAGTATATAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016829lyase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_006673KJC3_006673Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006673-T1KJC3_006673-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006673-T1.cdsKJC3_006673-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006673-T1.utr3p1KJC3_006673-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006673-T1.exon2KJC3_006673-T1.exon2Aspergillus niger KJC3exon
KJC3_006673-T1.exon1KJC3_006673-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006673-T1.utr5p2KJC3_006673-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_006673-T1.utr5p1KJC3_006673-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR013785
DBxrefInterPro:IPR002220
DBxrefPFAM:PF00701
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch5supercontigch5:55126..56549 -
Powered by Drupal